BAC Information

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BAC

Clone NameB6Ng01-035F09
Chromosome3 (Build37)
Map Location 95,298,185 - 95,359,136
singlet/doubletdoublet
Overlap geneArnt, Ctsk, Ctss, LOC100043312
Upstream geneSnx27, LOC100043228, EG668409, Tuft1, LOC100042793, BC021767, Selenbp2, LOC100042801, Cgn, Pogz, Psmb4, Selenbp1, Rfx5, Pik4cb, Zfp687, Psmd4, Pip5k1a, Vps72, Tmod4, Scnm1, Lysmd1, Tnfaip8l2, LOC668436, Sema6c, Gabpb2, Mllt11, Cdc42se1, Gm128, Bnipl, Prune, 4930504E06Rik, Anxa9, Lass2, Setdb1, LOC100043294, 4930558C23Rik, LOC277589, LOC668448, LOC100043305
Downstream geneHormad1, Golph3l, EG668457, Ensa, Mcl1, Adamtsl4, Ecm1, Tars2, 4930535B03Rik, LOC100043327, Prpf3, Mrps21, LOC100042889, Gm129, BC028528, Aph1a, Car14, Anp32e, LOC100042897, LOC100042898, EG668224, Plekho1, EG668222, Vps45, LOC100042908, Otud7b, Mtmr11, Sf3b4, Sv2a, Bola1, Hist2h2ab, Hist2h2ac, Hist2h2be, Hist2h3c2, Hist2h2aa1, Hist2h3c1, LOC100043378, Hist2h4, Hist2h3b, Hist2h2bb, Fcgr1, Pafah1b1-ps1, Terc, BC107364, LOC668500, Hfe2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-035F09.bB6Ng01-035F09.g
ACCDH863829DH863830
length1,021887
definitionDH863829|Mus musculus domesticus DNA, BAC clone: B6Ng01-035F09, 5' end.DH863830|Mus musculus domesticus DNA, BAC clone: B6Ng01-035F09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,358,099 - 95,359,136)(95,298,185 - 95,299,082)
sequence
gaattccacctgcctctgcctcctgagtgctgggattaaaggcgtgtacc
accaggccaagctgtcctaaagttatagctgagactgaccttaaattctt
aatccttctgattccaccctgtacaggtgttgtgtgccacaaagtctggc
ttaagggttatgtctttccagcatacatatttcttgagaaacaccttttt
tcttttttttctttggtttttcaagacaagatttcagggtttctctgtgt
agctctggctgtccagggacttggtctgcagaccaggctggcctcaaact
cagagatctgccttcctatgtctccagggtattaaaggcatgcaccacca
tcatctggcttgcagaaacatctgtcaagaagtacttttgagtaactact
atgaaagtgttacacagcaattagctctgaatcaaatgacaaataataca
gttgtgaattatccagatgagataattctcctatttaaagctatggaaaa
gtagaatattctacttagtgtagaaatgagctgcctgggactaaacattt
tccagcttgtcatgttagctggcgtctctgtactcaagaagccatataac
tgggcacacagcatcacacgctttaaaatcctaacgggcagcagaggagc
cagcccggaagcaggaggaacaggagctttttggttcctctgtggcttaa
tgaacttgaaggccagcctgggctacaataagaagcctggccaaaaaaga
gaaaaaaaaaaaaaaaaggaaggaaggagggagccaaaaaatgggtgtat
gggggaaaaaaaaaccttaaacaaataaaaaaagaagcccatgacacaag
aaggaacatgtcccactgtccacacaaggaaatactgcgtgtgagaaatc
aacttggctaagagtaatcacattgacattcctagtgtttccagcaacat
aatcactgccattgtagctctccagaatctgaaggagcatcgacctgact
ccagcctggttccagagcctg
gaattcttcagaaatgctatctaggaaatgaaacttactgtgagactgag
ttttgaaaatagaagcagccctgaccagcagagagaagagcagaaggtag
catatggagactactgacttacacgtagttgtgtgctggtttctcctctc
cattacaactataaatgcttattcttatttctagctcctgagactggaca
gaccacaggacagttccaggcccggacagcagagggcgtgggtgtctggc
cacagtggcagggccagcagccccatcatcggtctagttccagtgagcag
catgttcagcagacacaagcacaagcacctagccagcctgaggtctttca
agtgagtgggtaaagacttcagagagagatcggtcagggaagagaggaag
aaagaagcacatggtattggttagggctgaacggaatgagacagaggatg
catgtcagcagttgaagcaattataaacatagcctgtaaccagaccaggc
agaggtactgatgggaagcaacatgcaaagatgctaaagaaaggtatttt
aattttatacagagatttacatctcaaagtagtagttatggatttaaata
gaagaatacgaaaatatatggagtagaacatactgatcatagctataagt
atctgtttcctttgaggggcctgcaagattgaatgtgtcatctcagagaa
gccagtcagaaagaccaaagaaggcaacatagggtttgattgagaacaga
tgtgattaggcacattcagatgtgcctgtaggagtaaatgaaatgtggca
tgcatttttcttcagtaaaataatgagtacaagaaaagaggaaattaatg
atctcagaggaagatagaacaggaatgagaagagttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_95358099_95359136
seq2: B6Ng01-035F09.b_44_1064 (reverse)

seq1  CAGGCTCTGTA----------AGTCAAGGTCGATGGCTGCCTTCAGATTC  40
      ||||||||| |          |||| |||||||| ||| |||||||||||
seq2  CAGGCTCTGGAACCAGGCTGGAGTC-AGGTCGAT-GCT-CCTTCAGATTC  47

seq1  CCTGTGAGGAGCTAACAGATGGCAGTGATGTATGGTCTGCTGGGAAAGCA  90
          ||  ||||| ||| ||||||||||| ||||   ||||||  || ||
seq2  ----TGGAGAGCT-ACA-ATGGCAGTGAT-TATG--TTGCTGG--AAACA  86

seq1  GCTGAGGAAATGTCAAATGTTGATTTACTCTTAAGCCAATGTTGATTTAC  140
       || ||| |||||| |||| ||| |||||||| |||||| |||||||| |
seq2  -CT-AGG-AATGTC-AATG-TGA-TTACTCTT-AGCCAA-GTTGATTT-C  127

seq1  TCATCACGGCAGTGATCTCCTTGTTGTGGACATGTGTGACATGTTGCCTC  190
      ||| ||| ||||| || |||||| |||||||| ||| |||||||| | ||
seq2  TCA-CAC-GCAGT-ATTTCCTTG-TGTGGACA-GTGGGACATGTTCCTTC  172

seq1  TTGTTGTTCACTGGGCTTCTTTTTTTATTTGTTTAGGGTTTTTTTTTCCC  240
      ||||   ||| |||||||||||||||||||||||| ||||||||||||||
seq2  TTGT--GTCA-TGGGCTTCTTTTTTTATTTGTTTAAGGTTTTTTTTTCCC  219

seq1  CCATACACCCATTTTTTTGGCTCCCTCCTTCCTTCCTTTTTTTTTTTTTT  290
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CCATACACCCA-TTTTTTGGCTCCCTCCTTCCTTCCTTTTTTTTTTTTTT  268

seq1  TTTTCTCTTTTTTTGGCCAGGC-TCTTA-TGTAGCCCAGGCTGGCC-TCA  337
      || ||   |||||||||||||| ||||| ||||||||||||||||| |||
seq2  TTCTC---TTTTTTGGCCAGGCTTCTTATTGTAGCCCAGGCTGGCCTTCA  315

seq1  AGTTCATTAAGCCACAGAGGAAC--AAAAGCTCCTG-TCCTCCTGCTTCC  384
      |||||||||||||||||||||||  ||||||||||| |||||||||||||
seq2  AGTTCATTAAGCCACAGAGGAACCAAAAAGCTCCTGTTCCTCCTGCTTCC  365

seq1  -GGCTGGCTCCTCCTGCTG-CCGTTAGGATTTT-AAGCGTGTGATGCTGT  431
       ||||||||||| |||||| ||||||||||||| ||||||||||||||||
seq2  GGGCTGGCTCCT-CTGCTGCCCGTTAGGATTTTAAAGCGTGTGATGCTGT  414

seq1  GTGCCCAGTTATATGGCTTCTTGAGTACAGAGACGCCAGCTAACATGACA  481
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCCAGTTATATGGCTTCTTGAGTACAGAGACGCCAGCTAACATGACA  464

seq1  AGCTGGAAAATGTTTAGTCCCAGGCAGCTCATTTCTACACTAAGTAGAAT  531
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGAAAATGTTTAGTCCCAGGCAGCTCATTTCTACACTAAGTAGAAT  514

seq1  ATTCTACTTTTCCATAGCTTTAAATAGGAGAATTATCTCATCTGGATAAT  581
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTACTTTTCCATAGCTTTAAATAGGAGAATTATCTCATCTGGATAAT  564

seq1  TCACAACTGTATTATTTGTCATTTGATTCAGAGCTAATTGCTGTGTAACA  631
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAACTGTATTATTTGTCATTTGATTCAGAGCTAATTGCTGTGTAACA  614

seq1  CTTTCATAGTAGTTACTCAAAAGTACTTCTTGACAGATGTTTCTGCAAGC  681
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCATAGTAGTTACTCAAAAGTACTTCTTGACAGATGTTTCTGCAAGC  664

seq1  CAGATGATGGTGGTGCATGCCTTTAATACCCTGGAGACATAGGAAGGCAG  731
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGATGGTGGTGCATGCCTTTAATACCCTGGAGACATAGGAAGGCAG  714

seq1  ATCTCTGAGTTTGAGGCCAGCCTGGTCTGCAGACCAAGTCCCTGGACAGC  781
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTGAGTTTGAGGCCAGCCTGGTCTGCAGACCAAGTCCCTGGACAGC  764

seq1  CAGAGCTACACAGAGAAACCCTGAAATCTTGTCTTGAAAAACCAAAGAAA  831
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCTACACAGAGAAACCCTGAAATCTTGTCTTGAAAAACCAAAGAAA  814

seq1  AAAAAGAAAAAAGGTGTTTCTCAAGAAATATGTATGCTGGAAAGACATAA  881
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGAAAAAAGGTGTTTCTCAAGAAATATGTATGCTGGAAAGACATAA  864

seq1  CCCTTAAGCCAGACTTTGTGGCACACAACACCTGTACAGGGTGGAATCAG  931
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTAAGCCAGACTTTGTGGCACACAACACCTGTACAGGGTGGAATCAG  914

seq1  AAGGATTAAGAATTTAAGGTCAGTCTCAGCTATAACTTTAGGACAGCTTG  981
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATTAAGAATTTAAGGTCAGTCTCAGCTATAACTTTAGGACAGCTTG  964

seq1  GCCTGGTGGTACACGCCTTTAATCCCAGCACTCAGGAGGCAGAGGCAGGT  1031
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGTGGTACACGCCTTTAATCCCAGCACTCAGGAGGCAGAGGCAGGT  1014

seq1  GGAATTC  1038
      |||||||
seq2  GGAATTC  1021

seq1: chr3_95298185_95299082
seq2: B6Ng01-035F09.g_68_954

seq1  GAATTCTTCAGAAATGCTATCTAGGAAATGAAACTTACTGTGAGACTGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCAGAAATGCTATCTAGGAAATGAAACTTACTGTGAGACTGAG  50

seq1  TTTTGAAAATAGAAGCAGCCCTGACCAGCAGAGAGAAGAGCAGAAGGTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAAAATAGAAGCAGCCCTGACCAGCAGAGAGAAGAGCAGAAGGTAG  100

seq1  CATATGGAGACTACTGACTTACACGTAGTTGTGTGCTGGTTTCTCCTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGGAGACTACTGACTTACACGTAGTTGTGTGCTGGTTTCTCCTCTC  150

seq1  CATTACAACTATAAATGCTTATTCTTATTTCTAGCTCCTGAGACTGGACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACAACTATAAATGCTTATTCTTATTTCTAGCTCCTGAGACTGGACA  200

seq1  GACCACAGGACAGTTCCAGGCCCGGACAGCAGAGGGCGTGGGTGTCTGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCACAGGACAGTTCCAGGCCCGGACAGCAGAGGGCGTGGGTGTCTGGC  250

seq1  CACAGTGGCAGGGCCAGCAGCCCCATCATCGGTCTAGTTCCAGTGAGCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTGGCAGGGCCAGCAGCCCCATCATCGGTCTAGTTCCAGTGAGCAG  300

seq1  CATGTTCAGCAGACACAAGCACAAGCACCTAGCCAGCCTGAGGTCTTTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTCAGCAGACACAAGCACAAGCACCTAGCCAGCCTGAGGTCTTTCA  350

seq1  AGTGAGTGGGTAAAGACTTCAGAGAGAGATCGGTCAGGGAAGAGAGGAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGTGGGTAAAGACTTCAGAGAGAGATCGGTCAGGGAAGAGAGGAAG  400

seq1  AAAGAAGCACATGGTATTGGTTAGGGCTGAACGGAATGAGACAGAGGATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGCACATGGTATTGGTTAGGGCTGAACGGAATGAGACAGAGGATG  450

seq1  CATGTCAGCAGTTGAAGCAATTATAAACATAGCCTGTAACCAGACCAGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCAGCAGTTGAAGCAATTATAAACATAGCCTGTAACCAGACCAGGC  500

seq1  AGAGGTACTGATGGGAAGCAACATGCAAAGATGCTAAAGAAAGGTATTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTACTGATGGGAAGCAACATGCAAAGATGCTAAAGAAAGGTATTTT  550

seq1  AATTTTATACAGAGATTTACATCTCAAAGTAGTAGTTATGGATTTAAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTATACAGAGATTTACATCTCAAAGTAGTAGTTATGGATTTAAATA  600

seq1  GAAGAATACGAAAATATATGGAGTAGAACATACTGATCATAGCTATAAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAATACGAAAATATATGGAGTAGAACATACTGATCATAGCTATAAGT  650

seq1  ATCTGTTTCCTTTGAGGGGCCTGCAAGATTGAATGTGGTCATCTCAGAGA  700
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ATCTGTTTCCTTTGAGGGGCCTGCAAGATTGAATGT-GTCATCTCAGAGA  699

seq1  AGCCAGTCAGAAAGACCAAAGGAAGGCAACATAGGGTTTGATTGAGAACA  750
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AGCCAGTCAGAAAGACCAAA-GAAGGCAACATAGGGTTTGATTGAGAACA  748

seq1  GATGTGATTAGGCACATTTCAGATGTGCCTGTAGGAGTTAAATGAAATGT  800
      |||||||||||||||| |||||||||||||||||||| ||||||||||| 
seq2  GATGTGATTAGGCACA-TTCAGATGTGCCTGTAGGAG-TAAATGAAATG-  795

seq1  TGGCATGCATATTTCTTCAGTTAAAAATATTGAGTACAAGAAAAGAGGAA  850
      |||||||||| ||||||||||  |||||| |||||||||||||||||| |
seq2  TGGCATGCATTTTTCTTCAGT--AAAATAATGAGTACAAGAAAAGAGG-A  842

seq1  AATAAATGATCTCAGAGGAAGATAGAACAGAGAATGAGGAAAGAGTTC  898
      ||| |||||||||||||||||||||||||| |||||||  ||||||||
seq2  AATTAATGATCTCAGAGGAAGATAGAACAG-GAATGAG--AAGAGTTC  887