BAC Information

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BAC

Clone NameB6Ng01-035M13
Chromosome3 (Build37)12 (Build37)
Map Location 41,059,112 - 41,059,73795,558,592 - 95,559,381
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-035M13.bB6Ng01-035M13.g
ACCDH864159DH864160
length628785
definitionDH864159|Mus musculus domesticus DNA, BAC clone: B6Ng01-035M13, 5' end.DH864160|Mus musculus domesticus DNA, BAC clone: B6Ng01-035M13, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,059,112 - 41,059,737)(95,558,592 - 95,559,381)
sequence
gaattctttgttcagctctgagccccattttttaatggggttatttgata
ttctggagtccaccttattgagttctttatatatattggatattagtccc
ctatctgatttggaataggtaaagatcctttcttaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaagctttgcaatttta
tgagttcccatttatcgattctcaatcttacagcacaagccattgctgtt
ttattcaggaatttttcccctgtactcatatctttgaggcttttccctat
tttttcctctatatgtttcagtgtctctggttttatgtggagttccttga
tctacttagatttgaccttagtacaaggagatagaaatggatcaattcgc
attcttctacatgataaccgccagttgtgccagcaccaattgttgaaaat
gctgtcttttttccactggatggttttagctcccttgtcaaagatcaagt
gaccataggtgtgtgggttcttctctgggtcttcaattctgttccatttg
tctacatgtctgtcagtataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtcaggcaag
gaattcactgcaagaaacatggagaagttggcagctaaggcctatttttg
gataatgaatcctatttctgtgaatgctgcaaagataacggatggaggag
tattttgagtgacagagataggatgtgagaaaaacaaagtggcaaaaatt
ggaagctatcaacatgaaataatgggtagaatggtgggggatcgtcaatg
ggaaataagcaatctctgaacagtgaagttaccaaggagttagctgatac
taagaagccagaaacactgaagcacattaggaactcagcatacactctgg
gtttctttgacatccacgtatctcctcaatattttacaatgcatactttg
cacagggtctaacagaaaatacatgctcagtaaggaagaaactgaatact
gatttaagagaaaataaatagccagcaaggtagtacatgcctttaatgct
aacctggggaagcagaagcctacagatctctgagttttcaatcctgtctg
ttcaatgtaaacatgagttccagaacagtcaaggatatctatatagtgag
aatctgtcataaagaattatatatatatatacgtttgctcaatggaagct
atgtagtgccattaaatgtaatggcagtgaacaactgcccttttcaatct
tttatgctttgtttctcctactgttttgttctgtcattttgatttgccta
atttgggctgtttgctttctcaagaaaagagaagaagcttatggatgtgg
ttgtttggggaagtggaaaagatctgggaggacaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059112_41059737
seq2: B6Ng01-035M13.b_45_671 (reverse)

seq1  CATGCCTGACCTAAAGCTTTACTACAGAGCAATTGTGATAAAAACTGCAT  50
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCTGACCTAAAGCTTTACTACAGAGCAATTGTGATAAAAACTGCAT  50

seq1  GGTACTGGTATAGTGACAGACAAGCAGACCAATGGAATAGAATTGAAGAC  100
      |||||||||||| ||||||||| | |||| ||||||| ||||||||||||
seq2  GGTACTGGTATACTGACAGACATGTAGACAAATGGAACAGAATTGAAGAC  100

seq1  TCAGAAACGAATCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGC  150
       |||| | ||| |||||||||||||||||||||||||| |||||||||||
seq2  CCAGAGAAGAACCCACACACCTATGGTCACTTGATCTTTGACAAGGGAGC  150

seq1  TAAAACCATCCAGTGGAAAAAAGACAGCATTTTCAACAAATGGTGCTGGC  200
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TAAAACCATCCAGTGGAAAAAAGACAGCATTTTCAACAATTGGTGCTGGC  200

seq1  ACAACTGGTTGTTATCATGTAGAAGAATGCGAATTGATCCACTCCTATCT  250
      ||||||||  ||||||||||||||||||||||||||||||| | ||||||
seq2  ACAACTGGCGGTTATCATGTAGAAGAATGCGAATTGATCCATTTCTATCT  250

seq1  CCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGAACGCCACATAAAACC  300
      ||||||||||||||||||||||||| ||||||||||| ||||||||||||
seq2  CCTTGTACTAAGGTCAAATCTAAGTAGATCAAGGAACTCCACATAAAACC  300

seq1  AGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATA  350
      |||||||||||||| ||||||||| ||| | |||||||||||  ||||||
seq2  AGAGACACTGAAACATATAGAGGAAAAAATAGGGAAAAGCCTCAAAGATA  350

seq1  TGGTCACAGGGGAAAAATTCCTGCATAGAACAGCAATGGCTTGTGCTGTA  400
      ||   |||||||||||||||||| ||| ||||||||||||||||||||||
seq2  TGAGTACAGGGGAAAAATTCCTGAATAAAACAGCAATGGCTTGTGCTGTA  400

seq1  AGATTGAGAATAGACAAATGGGACCTCATGAAACTGCAAAGCTTCTGCAA  450
      ||||||||||| || |||||||| ||||| ||| ||||||||||||||||
seq2  AGATTGAGAATCGATAAATGGGAACTCATAAAATTGCAAAGCTTCTGCAA  450

seq1  GGCAAAAGACACCGTCAATAAGACAAAAAG-GCACCAACAGATTGGGAAA  499
      ||||||||||||||||||||||||||||||  ||||||||||||  ||||
seq2  GGCAAAAGACACCGTCAATAAGACAAAAAGACCACCAACAGATTAAGAAA  500

seq1  GGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAATATATAT  549
      |||||||||||||| | |||||||||||||||||||||||||||||||||
seq2  GGATCTTTACCTATTCCAAATCAGATAGGGGACTAATATCCAATATATAT  550

seq1  CAAGAACTCAAGAAGGTGGATTCCAGAAAATCAAATAACCCCATTAAAAA  599
       |||||||||| |||||||| ||||||| |||||||||||||||||||||
seq2  AAAGAACTCAATAAGGTGGACTCCAGAATATCAAATAACCCCATTAAAAA  600

seq1  ATGGGGCTCAGAGCTAAACAAAGAATT  626
      ||||||||||||||| |||||||||||
seq2  ATGGGGCTCAGAGCTGAACAAAGAATT  627

seq1: chr12_95558592_95559381
seq2: B6Ng01-035M13.g_68_852 (reverse)

seq1  TTGTCCTCCCAGATCTTCTCCACTTCCCCAGACAACCACATCCAT-AGCT  49
      ||||||||||||||||| |||||||||||| |||||||||||||| ||||
seq2  TTGTCCTCCCAGATCTTTTCCACTTCCCCAAACAACCACATCCATAAGCT  50

seq1  TCTTTCTCTATTTCTTGAGAAAGCAAACAAGCACAAAATAAGGCAAATCA  99
      || |||||| |||||||||||||||||| ||| | |||| ||||||||||
seq2  TC-TTCTCT-TTTCTTGAGAAAGCAAAC-AGC-CCAAATTAGGCAAATCA  96

seq1  AAATGAACAGAACAAAACAGTAGGAGAAACAAAGCATAAAAGATTGGAAA  149
      ||||| |||||||||||||||||||||||||||||||||||||||| |||
seq2  AAATG-ACAGAACAAAACAGTAGGAGAAACAAAGCATAAAAGATTGAAAA  145

seq1  GGGCAGTTGTTCACTGCCATTACATTTAATGGCACTACATTAGCTTCCAT  199
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GGGCAGTTGTTCACTGCCATTACATTTAATGGCACTACA-TAGCTTCCAT  194

seq1  TGAGCAAACGTATATATATATATAATTCTTTATGACAGATTCTCACTATA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAAACGTATATATATATATAATTCTTTATGACAGATTCTCACTATA  244

seq1  TAGATATCCTTGACTGTTCTGGAACTCATGTTTACATTGAACAGACAGGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATATCCTTGACTGTTCTGGAACTCATGTTTACATTGAACAGACAGGA  294

seq1  TTGAAAACTCAGAGATCTGTAGGCTTCTGCTTCCCCAGGTTAGCATTAAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAACTCAGAGATCTGTAGGCTTCTGCTTCCCCAGGTTAGCATTAAA  344

seq1  GGCATGTACTACCTTGCTGGCTATTTATTTTCTCTTAAATCAGTATTCAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATGTACTACCTTGCTGGCTATTTATTTTCTCTTAAATCAGTATTCAG  394

seq1  TTTCTTCCTTACTGAGCATGTATTTTCTGTTAGACCCTGTGCAAAGTATG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCCTTACTGAGCATGTATTTTCTGTTAGACCCTGTGCAAAGTATG  444

seq1  CATTGTAAAATATTGAGGAGATACGTGGATGTCAAAGAAACCCAGAGTGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTAAAATATTGAGGAGATACGTGGATGTCAAAGAAACCCAGAGTGT  494

seq1  ATGCTGAGTTCCTAATGTGCTTCAGTGTTTCTGGCTTCTTAGTATCAGCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGAGTTCCTAATGTGCTTCAGTGTTTCTGGCTTCTTAGTATCAGCT  544

seq1  AACTCCTTGGTAACTTCACTGTTCAGAGATTGCTTATTTCCCATTGACGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCTTGGTAACTTCACTGTTCAGAGATTGCTTATTTCCCATTGACGA  594

seq1  TCCCCCACCATTCTACCCATTATTTCATGTTGATAGCTTCCAATTTTTGC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCACCATTCTACCCATTATTTCATGTTGATAGCTTCCAATTTTTGC  644

seq1  CACTTTGTTTTTCTCACATCCTATCTCTGTCACTCAAAATACTCCTCCAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTGTTTTTCTCACATCCTATCTCTGTCACTCAAAATACTCCTCCAT  694

seq1  CCGTTATCTTTGCAGCATTCACAGAAATAGGATTCATTATCCAAAAATAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTTATCTTTGCAGCATTCACAGAAATAGGATTCATTATCCAAAAATAG  744

seq1  GCCTTAGCTGCCAACTTCTCCATGTTTCTTGCAGTGAATTC  790
      |||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTAGCTGCCAACTTCTCCATGTTTCTTGCAGTGAATTC  785