BAC Information

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BAC

Clone NameB6Ng01-035N06
Chromosome3 (Build37)
Map Location 117,248,631 - 117,388,895
singlet/doubletdoublet
Overlap gene4833424O15Rik
Upstream geneDbt, LOC100043705, Lrrc39, A930028L21Rik, Sass6, Hiat1, Slc35a3, Agl, LOC100043710, LOC100043250, Frrs1, Palmd, EG668749, 1700061I17Rik, LOC674908, D3Bwg0562e
Downstream geneEG668759, Snx7, LOC100043260, Dpyd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-035N06.bB6Ng01-035N06.g
ACCDH864191DH864192
length1,085899
definitionDH864191|Mus musculus domesticus DNA, BAC clone: B6Ng01-035N06, 5' end.DH864192|Mus musculus domesticus DNA, BAC clone: B6Ng01-035N06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,248,631 - 117,249,760)(117,387,977 - 117,388,895)
sequence
gaattcattggttcattttgttttcaggaacaggaactaagctttgggtg
ctattgattcttattggtcagcatctggaaagtccccagttcttccaggg
cctaagaccttgaacttagtttcatcttataggtaatatgaagtctgaag
tcaaaatggcagtacttaagacacgttcttttctttagtcccagtactaa
aaactccttgtcactcgtttgccgttgttctgttctgaacaagtgtcata
ttttattggagctagttagtacctgaactttacggcttccctccccattt
ccttcaggagcctcacccataaaatctcagtgaaatttctacaacataaa
ttagctcatgctattcatttgtcctcaaatacatcaattccatgctgtac
aaaatagcatcagcatctataaaacaatctatgaacataccattggacag
ccctgggctgtctctgtggttttcatcaactatctacttcttattttgat
tttatcttacttacactctcctgggctacctatagttccctgttgaacat
catggaacacagcgagtttattgctgcctcgtggctaacatgtcctccag
tagtttctcccacttgcctgtattttgctttatttttacttttttattag
atattttctttatttacatttcaaatgttataccctttcctagtttcccc
tctgaaaatcctctatcccctccccacttcccctgctccacatctcatcc
actcctgcttactggacctggcattcccctcctggggcatagaaccttca
cagaccaagtcctcttctctgattgatgactgactaggccatcctctgct
acatatgcactacatcataagtcctaccacgtgtttcttgtgtgtttagt
cctgggagctctgggtactgtattcatatgtgtctcatatgggctcaacc
ctttagctcctggtacttcttagctctgcctattcccgctcaggtacctc
catcaaggcctccctcaaggaagtgtcactggcttaacatatatctaggc
ggactcatgcccgcgctatatagccaacaaaatga
gaattcactttgtagaaccggctggcctcaaactcagaaatctgcctgcc
tctgcctcccgagtgctgggattaaaggcgtgcgccatcacgccaggctc
cttcttttcttttaaaaagccagaaattatagagaagtaaaccttcagaa
tggctaaaattgaaatagactcagacctgtattacactatgtcacagaca
ctaaggcagcatagtaaaattttgacgctgtatgattaactcggacacac
atgggtttgcgttaagatagagcatgaaggtcaacaccatcgtctcacag
caacatcacaaaaaggtcatcacactgcctgttcagagttacacagactg
agagttagacatgagtgtagaatagagattaagcccaagtagttgaagaa
tagaacttgccaagtgtccattagcaagtattctttctagtccacagcac
agcagcaggcaaaatactgaggcttgtccttgagtgcaggtgtctcctgg
taaaacagtcactttgtgtcttaaaaatcacttcagatgctgaaatttag
aaaatttaagaccagtttcgatattctacatgtctgagcggccagataca
gtgttaaaaactgagcttagatggtcttttgagcagcaactgctcataac
cagagtcatttctccagtccaattaagtccaaatttaatgctccaaattc
tacgtgaaatctccattttactccttatttttctctatatacagattata
ccatataaatagaccatgtaacatatcagatgacatgtaagccaaacctc
atttttatgacacagatttggcgatggcttgctgttgtcaagatctgcat
cagcaagtcttttttaaaaaacaaaacaggagatgcaagtaatctgaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_117248631_117249760
seq2: B6Ng01-035N06.b_45_1129

seq1  GAATTCATTGGTTCATTTTGTTTTCAGGAACAGGAACTAAGCTTTGGGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGGTTCATTTTGTTTTCAGGAACAGGAACTAAGCTTTGGGTG  50

seq1  CTATTGATTCTTATTGGTCAGCATCTGGAAAGTCCCCAGTTCTTCCAGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGATTCTTATTGGTCAGCATCTGGAAAGTCCCCAGTTCTTCCAGGG  100

seq1  CCTAAGACCTTGAACTTAGTTTCATCTTATAGGTAATATGAAGTCTGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGACCTTGAACTTAGTTTCATCTTATAGGTAATATGAAGTCTGAAG  150

seq1  TCAAAATGGCAGTACTTAAGACACGTTCTTTTCTTTAGTCCCAGTACTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAATGGCAGTACTTAAGACACGTTCTTTTCTTTAGTCCCAGTACTAA  200

seq1  AAACTCCTTGTCACTCGTTTGCCGTTGTTCTGTTCTGAACAAGTGTCATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCCTTGTCACTCGTTTGCCGTTGTTCTGTTCTGAACAAGTGTCATA  250

seq1  TTTTATTGGAGCTAGTTAGTACCTGAACTTTACGGCTTCCCTCCCCATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTGGAGCTAGTTAGTACCTGAACTTTACGGCTTCCCTCCCCATTT  300

seq1  CCTTCAGGAGCCTCACCCATAAAATCTCAGTGAAATTTCTACAACATAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCAGGAGCCTCACCCATAAAATCTCAGTGAAATTTCTACAACATAAA  350

seq1  TTAGCTCATGCTATTCATTTGTCCTCAAATACATCAATTCCATGCTGTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTCATGCTATTCATTTGTCCTCAAATACATCAATTCCATGCTGTAC  400

seq1  AAAATAGCATCAGCATCTATAAAACAATCTATGAACATACCATTGGACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAGCATCAGCATCTATAAAACAATCTATGAACATACCATTGGACAG  450

seq1  CCCTGGGCTGTCTCTGTGGTTTTCATCAACTATCTACTTCTTATTTTGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGGCTGTCTCTGTGGTTTTCATCAACTATCTACTTCTTATTTTGAT  500

seq1  TTTATCTTACTTACACTCTCCTGGGCTACCTATAGTTCCCTGTTGAACAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCTTACTTACACTCTCCTGGGCTACCTATAGTTCCCTGTTGAACAT  550

seq1  CATGGAACACAGCGAGTTTATTGCTGCCTCGTGGCTAACATGTCCTCCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGAACACAGCGAGTTTATTGCTGCCTCGTGGCTAACATGTCCTCCAG  600

seq1  TAGTTTCTCCCACTTGCCTGTATTTTGCTTTATTTTTACTTTTTTATTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTCTCCCACTTGCCTGTATTTTGCTTTATTTTTACTTTTTTATTAG  650

seq1  ATATTTTCTTTATTTACATTTCAAATGTTATACCCTTTCCTAGTTTCCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTCTTTATTTACATTTCAAATGTTATACCCTTTCCTAGTTTCCCC  700

seq1  TCTGAAAATCCTCTATCCCCTCCCCACTTCCCCTGCTCCACATCTCATCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAAATCCTCTATCCCCTCCCCACTTCCCCTGCTCCACATCTCATCC  750

seq1  ACTCCTGCTTACTGGACCTGGCATTCCCCTCCTGGGGCATAGAACCTTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTGCTTACTGGACCTGGCATTCCCCTCCTGGGGCATAGAACCTTCA  800

seq1  CAGGACCAAGGTCCTCTTCTCTGATTGATGACTGACTAGGCCATCCTCTG  850
      || |||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CA-GACCAA-GTCCTCTTCTCTGATTGATGACTGACTAGGCCATCCTCTG  848

seq1  CTACATATGCAACTACAATCATAAGTCCTACCACGTGTTTTCTTTGGTTG  900
      |||||||||| ||||| |||||||||||||||||||| ||||||  ||  
seq2  CTACATATGC-ACTAC-ATCATAAGTCCTACCACGTG-TTTCTTGTGT--  893

seq1  GTGGTTTAGTCCCTGGGAGCTCTTGGGGTACTGGTTATTTCATATTGTTG  950
         ||||||| ||||||||||||  ||||||||  || ||||||    ||
seq2  ---GTTTAGT-CCTGGGAGCTCT--GGGTACTG--TA-TTCATA----TG  930

seq1  TTCCTCATATGGGGCTTCAAACCCCTTTAGCTCCTTGGGTACTTTCTCTA  1000
      |  ||||||||||   ||||  |||||||||||||  ||||| |||| ||
seq2  TGTCTCATATGGG--CTCAA--CCCTTTAGCTCCT--GGTAC-TTCT-TA  972

seq1  GCTCTGCCCTATTCTCTGCTCAAGTGTTACCTTCCAATCAAAGGCCTTCC  1050
      |||||| ||||||| | |||||   | |||||  | ||| ||||||| ||
seq2  GCTCTG-CCTATTC-CCGCTCA---GGTACCT--CCATC-AAGGCCTCCC  1014

seq1  TCAAGGGAGTGTCACTGGGCTTACACATAATACTTAAGGCCAGACTCCAT  1100
      |||||| ||||||||| |||||| |||| |||  ||  | | |||| |||
seq2  TCAAGGAAGTGTCACT-GGCTTA-ACAT-ATATCTA--GGCGGACT-CAT  1058

seq1  GCCCAGCCATAAATAGCCAACACAAAATGA  1130
      |||| ||  || |||||||  |||||||||
seq2  GCCC-GCGCTATATAGCCA--ACAAAATGA  1085

seq1: chr3_117387977_117388895
seq2: B6Ng01-035N06.g_66_964 (reverse)

seq1  TTTCAGGATTACTTTTGCATCTTCCTGTTTTTGTTTTTTTAAAAAAAAAG  50
      ||||| ||||||  ||||||| ||||| |||||||||||    |||||||
seq2  TTTCA-GATTAC--TTGCATC-TCCTG-TTTTGTTTTTT----AAAAAAG  41

seq1  AACTTGCTGAATGGCAGATCTTGACAAACAGCAAGCCATCGCCAAATTCT  100
       |||||||||   |||||||||||| |||||||||||||||||||| |||
seq2  -ACTTGCTGA--TGCAGATCTTGAC-AACAGCAAGCCATCGCCAAA-TCT  86

seq1  GGTGTCATAAAAATGAGGTTTGGCTTACATGTCATTCTGATTATGTTACA  150
       ||||||||||||||||||||||||||||||||| ||||| |||||||||
seq2  -GTGTCATAAAAATGAGGTTTGGCTTACATGTCA-TCTGA-TATGTTACA  133

seq1  TGGTTCTATTTATATGGTATAATCTGTATATAGAGAAAAATAAGGAGTAA  200
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGG-TCTATTTATATGGTATAATCTGTATATAGAGAAAAATAAGGAGTAA  182

seq1  AATGGAGATTTTCACGTAGAATTTGGAGCATTAAATTTGGACTTAATTGG  250
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAGA-TTTCACGTAGAATTTGGAGCATTAAATTTGGACTTAATTGG  231

seq1  ACTGGAGAAATGACTCTGGTTATGAGCAGTTGCTGCTCAAAAGACCATCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAGAAATGACTCTGGTTATGAGCAGTTGCTGCTCAAAAGACCATCT  281

seq1  AAGCTCAGTTTTTAACACCTGTATCTGGCCGCTCAGACATGTAGAATATC  350
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AAGCTCAGTTTTTAACA-CTGTATCTGGCCGCTCAGACATGTAGAATATC  330

seq1  GAAACTGGTCTTAAATTTTCTAAATTTCAGCATCTGAAGTGATTTTTAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTGGTCTTAAATTTTCTAAATTTCAGCATCTGAAGTGATTTTTAAG  380

seq1  ACACAAAGTGACTGTTTTACCAGGAGACACCTGCACTCAAGGACAAGCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAAGTGACTGTTTTACCAGGAGACACCTGCACTCAAGGACAAGCCT  430

seq1  CAGTATTTTGCCTGCTGCTGTGCTGTGGACTAGAAAGAATACTTGCTAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATTTTGCCTGCTGCTGTGCTGTGGACTAGAAAGAATACTTGCTAAT  480

seq1  GGACACTTGGCAAGTTCTATTCTTCAACTACTTGGGCTTAATCTCTATTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACTTGGCAAGTTCTATTCTTCAACTACTTGGGCTTAATCTCTATTC  530

seq1  TACACTCATGTCTAACTCTCAGTCTGTGTAACTCTGAACAGGCAGTGTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTCATGTCTAACTCTCAGTCTGTGTAACTCTGAACAGGCAGTGTGA  580

seq1  TGACCTTTTTGTGATGTTGCTGTGAGACGATGGTGTTGACCTTCATGCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTTTTTGTGATGTTGCTGTGAGACGATGGTGTTGACCTTCATGCTC  630

seq1  TATCTTAACGCAAACCCATGTGTGTCCGAGTTAATCATACAGCGTCAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTAACGCAAACCCATGTGTGTCCGAGTTAATCATACAGCGTCAAAA  680

seq1  TTTTACTATGCTGCCTTAGTGTCTGTGACATAGTGTAATACAGGTCTGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACTATGCTGCCTTAGTGTCTGTGACATAGTGTAATACAGGTCTGAG  730

seq1  TCTATTTCAATTTTAGCCATTCTGAAGGTTTACTTCTCTATAATTTCTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTTCAATTTTAGCCATTCTGAAGGTTTACTTCTCTATAATTTCTGG  780

seq1  CTTTTTAAAAGAAAAGAAGGAGCCTGGCGTGATGGCGCACGCCTTTAATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTAAAAGAAAAGAAGGAGCCTGGCGTGATGGCGCACGCCTTTAATC  830

seq1  CCAGCACTCGGGAGGCAGAGGCAGGCAGATTTCTGAGTTTGAGGCCAGCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCACTCGGGAGGCAGAGGCAGGCAGATTTCTGAGTTTGAGGCCAGCC  880

seq1  GGTTCTACAAAGTGAATTC  919
      |||||||||||||||||||
seq2  GGTTCTACAAAGTGAATTC  899