BAC Information

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BAC

Clone NameB6Ng01-036O20
Chromosome3 (Build37)
Map Location 46,057,704 - 46,195,282
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039296, Pcdh10, LOC100039282, LOC433580, LOC671801
Downstream geneEG241989, LOC545517, LOC383849, LOC383850
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-036O20.bB6Ng01-036O20.g
ACCDH864952DH864953
length475789
definitionDH864952|Mus musculus domesticus DNA, BAC clone: B6Ng01-036O20, 5' end.DH864953|Mus musculus domesticus DNA, BAC clone: B6Ng01-036O20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,194,802 - 46,195,282)(46,057,704 - 46,058,499)
sequence
taatctactgaagttgaataaatacttctctgaaaacactaggctgtctc
tttctgtgtcatcaaaagtcaatgggccaaatttttacttataatttcat
gaataaaatccattatccttaatatttataagtagtatacttaagcatac
ttaagtagagttaatattctgtataatttataaaaattaaagtaatattt
gtccttgagatttataaaagtaggttgtctattggcattatgaatattag
tcagtatataaacattttaaatgatttaattttgatattttaatatatca
ttcccaattcttctcttgtttccaaaccattatatatgtacttccttaat
ctttttcaaactcatgacatgtttttttattatttggtgttacataaaga
tatatatgtatatgcacacgtatatgtataatgtatttgtataatgtgta
tgtatatatgtatatgtatatgtat
gaattcaatgtagaaaaaaaaaaagagaacaaatacttttgtagaaggca
attaaatcccacagactcacaagctttcctttagccttctgaaggacagg
taattgctcatcaatggtatttctccagattctaggatgcatatttgatt
aacagtgccaaggcactgctattatgtccgtatatttagaacacaaaggt
ttaattattaatgcaacattccaaatgattatcaagataaatgtgagcat
ttacagtctctttagttctcaagagtcttgtaaaataaacctgttgtctt
tgatttcaagttaacccctgattattggatgtatcttccaatcagctgag
gaatcaggaagtgcttcctaatcaaccctgtggtggtttatctattaaat
taatttgcatctttacccactttgtctttgaaatcctgttgaaatcaaat
ggcccttattttaaaaagtcatggagggattttcaatattcaaatcacaa
gagcttttgcctcattaatttaagaaagcttgaaaaaacaaatttaagtt
aatttttgcagaaaactttcctttgatttctattaaaaattaatatatat
atatttttctaggaacggtttttgaaatccgaatactatagtgagagccc
tactttaagaactttataaaataccccattgttgtaatggattatttctc
caaataaattccctgcaaaagaaatggggaaaaaactaaggaatgcttat
aagaaaaacaaagcccacgttggcccattttttgccctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_46194802_46195282
seq2: B6Ng01-036O20.b_47_527 (reverse)

seq1  ATACATATACATATACATATATACATACACATTATACAAATACATTATAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATATACATATACATATATACATACACATTATACAAATACATTATAC  50

seq1  ATATACGTGTGCATATACATATATATCTTTATGTAACACCAAATAATAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACGTGTGCATATACATATATATCTTTATGTAACACCAAATAATAAA  100

seq1  AAAACATGTCATGAGTTTGAAAAAGATTAAGGAAGTACATATATAATGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATGTCATGAGTTTGAAAAAGATTAAGGAAGTACATATATAATGGT  150

seq1  TTGGAAACAAGAGAAGAATTGGGAATGATATATTAAAATATCAAAATTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAACAAGAGAAGAATTGGGAATGATATATTAAAATATCAAAATTAA  200

seq1  ATCATTTAAAATGTTTATATACTGACTAATATTCATAATGCCAATAGACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTTAAAATGTTTATATACTGACTAATATTCATAATGCCAATAGACA  250

seq1  ACCTACTTTTATAAATCTCAAGGACAAATATTACTTTAATTTTTATAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTACTTTTATAAATCTCAAGGACAAATATTACTTTAATTTTTATAAAT  300

seq1  TATACAGAATATTAACTCTACTTAAGTATGCTTAAGTATACTACTTATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACAGAATATTAACTCTACTTAAGTATGCTTAAGTATACTACTTATAA  350

seq1  ATATTAAGGATAATGGATTTTATTCATGAAATTATAAGTAAAAATTTGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAAGGATAATGGATTTTATTCATGAAATTATAAGTAAAAATTTGGC  400

seq1  CCATTGACTTTTGATGACACAGAAAGAGACAGCCTAGTGTTTTCAGAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGACTTTTGATGACACAGAAAGAGACAGCCTAGTGTTTTCAGAGAA  450

seq1  GTATTTATTCAACTTCAGTAGATTAGAATTC  481
      |||||||||||||||||||||||||||||||
seq2  GTATTTATTCAACTTCAGTAGATTAGAATTC  481

seq1: chr3_46057704_46058499
seq2: B6Ng01-036O20.g_68_856

seq1  GAATTCAATGTAGAAAAAAAAAAAGAGAACAAATACTTTTGTAGAAGGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGTAGAAAAAAAAAAAGAGAACAAATACTTTTGTAGAAGGCA  50

seq1  ATTAAATCCCACAGACTCACAAGCTTTCCTTTAGCCTTCTGAAGGACAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATCCCACAGACTCACAAGCTTTCCTTTAGCCTTCTGAAGGACAGG  100

seq1  TAATTGCTCATCAATGGTATTTCTCCAGATTCTAGGATGCATATTTGATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGCTCATCAATGGTATTTCTCCAGATTCTAGGATGCATATTTGATT  150

seq1  AACAGTGCCAAGGCACTGCTATTATGTCCGTATATTTAGAACACAAAGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTGCCAAGGCACTGCTATTATGTCCGTATATTTAGAACACAAAGGT  200

seq1  TTAATTATTAATGCAACATTCCAAATGATTATCAAGATAAATGTGAGCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTATTAATGCAACATTCCAAATGATTATCAAGATAAATGTGAGCAT  250

seq1  TTACAGTCTCTTTAGTTCTCAAGAGTCTTGTAAAATAAACCTGTTGTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGTCTCTTTAGTTCTCAAGAGTCTTGTAAAATAAACCTGTTGTCTT  300

seq1  TGATTTCAAGTTAACCCCTGATTATTGGATGTATCTTCCAATCAGCTGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTCAAGTTAACCCCTGATTATTGGATGTATCTTCCAATCAGCTGAG  350

seq1  GAATCAGGAAGTGCTTCCTAATCAACCCTGTGGTGGTTTATCTATTAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCAGGAAGTGCTTCCTAATCAACCCTGTGGTGGTTTATCTATTAAAT  400

seq1  TAATTTGCATCTTTACCCAC-TTGTCTTTGAAATCCTGTTG-AATCAAAT  448
      |||||||||||||||||||| |||||||||||||||||||| ||||||||
seq2  TAATTTGCATCTTTACCCACTTTGTCTTTGAAATCCTGTTGAAATCAAAT  450

seq1  GG-CCTTATTTTAAAAAGTCAT-GAGGGA-TTTCAATATTCAAATCACAA  495
      || ||||||||||||||||||| |||||| ||||||||||||||||||||
seq2  GGCCCTTATTTTAAAAAGTCATGGAGGGATTTTCAATATTCAAATCACAA  500

seq1  GAGCTTTTGCCTCATTAATTTAAG-AAGCTTG-AAAAACAAATTTAAGTT  543
      |||||||||||||||||||||||| ||||||| |||||||||||||||||
seq2  GAGCTTTTGCCTCATTAATTTAAGAAAGCTTGAAAAAACAAATTTAAGTT  550

seq1  AA-TTTTGCAGAAAACTTT-CTTTGA-TTCTATTATAAATTAATATATAT  590
      || |||||||||||||||| |||||| |||||||| ||||||||||||||
seq2  AATTTTTGCAGAAAACTTTCCTTTGATTTCTATTAAAAATTAATATATAT  600

seq1  ATATTTTTCTAAGTAACGG-TTTTGAAATCAGATTACTATAAGTGAGAAG  639
      |||||||||| || ||||| |||||||||| || |||||| |||||| ||
seq2  ATATTTTTCT-AGGAACGGTTTTTGAAATCCGAATACTAT-AGTGAG-AG  647

seq1  CCGTACTTTAAGAACTTAATAAAAATAGCTCTATTGTTTGTAATTGATTT  689
      || |||||||||||||| || |||||| | | |||| ||||||| |||| 
seq2  CCCTACTTTAAGAACTTTAT-AAAATA-CCCCATTG-TTGTAATGGATT-  693

seq1  ATTTTCTCCTAAATATAATTGCACTGCAAAAAGAAATGGGGAAAGAAAAC  739
        ||||||| ||||| |||| | |||| |||||||||||||||  |||||
seq2  -ATTTCTCC-AAATA-AATT-CCCTGC-AAAAGAAATGGGGAA--AAAAC  736

seq1  TAAGGAATGCTTTAATAAGAAAAACAAAAGCCCACGTTGGCACATTTTTT  789
      ||||||||||||  ||||||||||| ||||||||||||||| || |||||
seq2  TAAGGAATGCTT--ATAAGAAAAAC-AAAGCCCACGTTGGCCCA-TTTTT  782

seq1  TGCCCTT  796
      |||||||
seq2  TGCCCTT  789