BAC Information

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BAC

Clone NameB6Ng01-037A17
Chromosome3 (Build37)
Map Location 3,784,145 - 3,952,870
singlet/doubletdoublet
Overlap geneEG383815, LOC100039157, LOC100039167
Upstream geneLOC667655, LOC100039140, Hnf4g
Downstream geneLOC667709, LOC620283
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-037A17.bB6Ng01-037A17.g
ACCDH865038DH865039
length1,1181,072
definitionDH865038|Mus musculus domesticus DNA, BAC clone: B6Ng01-037A17, 5' end.DH865039|Mus musculus domesticus DNA, BAC clone: B6Ng01-037A17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(3,784,145 - 3,785,279)(3,951,795 - 3,952,870)
sequence
gaattcatcagtgcttatatgtagcacagattctccatgttcaggtaaga
ggatcctcgaatctcaatggactgctactatagtggaaagagtgagcaga
agagtgagttgaagaacctgtaccagaaagagagaaactctcttctcata
tagctttaaattatggacaaattctagcagctgtgagctcctcacattct
gcggcctgttcctaggcttcatcaaccagggctgtccaatgggattactg
taagctttcatggcagcctgccagtcactgatgagaaactcctagaactg
aatgttagattgctctctttattccatccctgtgatggctgtgattgcta
tcatggtgttaggttagaaattagcattgtgtagcccagatttcgccatc
acatgagacaattatcaggccacttgcatttgtttttctttttcctttga
aatatatattgtcttatgtatttcagttagcccacttgtgagaagaatca
tacttgaatagaatttcttcgaaatagccatttgagctcaggaaggacaa
tcatatttagagaaatgaacagaaatagctttggtattttaaaaagccac
ccaccaattgtgtatattcttaaattctcctagcaaacagttgtttacta
ggaattatgtgccaaagatggtcctagagattataggtaatgccatgaat
cttgagtctgtaagacactttattatattatacttcctttccagtgcaaa
gcatgtgacaattcagaaaaagattcattctgaattcttctagcaatatg
attgaccatacttcacaaatattgaatacatttatatgaccagctatcca
gacaatagtcagtcagtgagtttaaaccctttagcatattcagacatttt
gaaacctttctaattctttgagtttaaaatgcaatatttgaggtatctaa
aatacgattatatctatataagtacataccaagacattcagtgtaattta
atgcagacaaaaaatgtattgagagatttaaataatttatctttgaatta
ccaatattctaccagcctgaatagaaaatttatttcaataccatatcata
taaaggtaacaaaacatg

gaattctctgaagttctgaacaagatggaagaaacatgttgagaagacag
gaagtgcaagcaacataagctaagcagaaacattctattgcacatttatt
ttgcagcttgatgaatgctattaatattaaaatgagttagtaaggtcttc
cctgtttcctagtgcaaagtgacctcaggtggctcagctgcaaattgtca
ctgtaagaaattagaagacagaaatcagaggacggtcccattctttctgt
gcatattttgaaacattttaaatctatccttaatggaattatgattaaac
cttaaaggtatttccatatatttcaagctataacaaaattcttctccttt
cattgttcattaacattggtctctattaaacaatatttcatttatgctag
aaaagtaaaaattattcatatgatattagaaagctaccactagcatacat
ttattataaaaataatattttatatttattatatgattatatgaaaagaa
acaaatattttgcaatcacctttaaatagattgtatttgtattcaacaca
aaatggaaagatacactctagacaccaagtacacagtgtagcattggtct
tggctaaaatggtatctcattgagactcaatgagaagaaaatgagaattg
acttatgtgtattgactattttcccacacaaaaactctctctctctctca
cacacacacacacacacacacacacacacatggggggtgcttcaaagata
ttaagaaacaaaataaacaagaatgcacagctgaatttaaaattatatgc
ctgtttcctaagctcatatatttcctatttgacagattacgggagcattg
gtaattgaattactattctttactgtatatattaatatgctctattgaga
tagtctcacaggcacaacctgaatctcctttgtacatttagtaacataat
tttgcattcccaaatacctactgcatagtataaatcacaaactatatatt
gagctttattaaagtggttcctcgatgacttcacaatagagatatgcctc
cctactccaactccatgatctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_3784145_3785279
seq2: B6Ng01-037A17.b_41_1158

seq1  GAATTCATCAGTGCTTATATGTAGCACAGATTCTCCATGTTCAGGTAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCAGTGCTTATATGTAGCACAGATTCTCCATGTTCAGGTAAGA  50

seq1  GGATCCTCGAATCTCAATGGACTGCTACTATAGTGGAAAGAGTGAGCAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCCTCGAATCTCAATGGACTGCTACTATAGTGGAAAGAGTGAGCAGA  100

seq1  AGAGTGAGTTGAAGAACCTGTACCAGAAAGAGAGAAACTCTCTTCTCATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGAGTTGAAGAACCTGTACCAGAAAGAGAGAAACTCTCTTCTCATA  150

seq1  TAGCTTTAAATTATGGACAAATTCTAGCAGCTGTGAGCTCCTCACATTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTTAAATTATGGACAAATTCTAGCAGCTGTGAGCTCCTCACATTCT  200

seq1  GCGGCCTGTTCCTAGGCTTCATCAACCAGGGCTGTCCAATGGGATTACTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGCCTGTTCCTAGGCTTCATCAACCAGGGCTGTCCAATGGGATTACTG  250

seq1  TAAGCTTTCATGGCAGCCTGCCAGTCACTGATGAGAAACTCCTAGAACTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTTTCATGGCAGCCTGCCAGTCACTGATGAGAAACTCCTAGAACTG  300

seq1  AATGTTAGATTGCTCTCTTTATTCCATCCCTGTGATGGCTGTGATTGCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTAGATTGCTCTCTTTATTCCATCCCTGTGATGGCTGTGATTGCTA  350

seq1  TCATGGTGTTAGGTTAGAAATTAGCATTGTGTAGCCCAGATTTCGCCATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGTGTTAGGTTAGAAATTAGCATTGTGTAGCCCAGATTTCGCCATC  400

seq1  ACATGAGACAATTATCAGGCCACTTGCATTTGTTTTTCTTTTTCCTTTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGAGACAATTATCAGGCCACTTGCATTTGTTTTTCTTTTTCCTTTGA  450

seq1  AATATATATTGTCTTATGTATTTCAGTTAGCCCACTTGTGAGAAGAATCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATATTGTCTTATGTATTTCAGTTAGCCCACTTGTGAGAAGAATCA  500

seq1  TACTTGAATAGAATTTCTTCGAAATAGCCATTTGAGCTCAGGAAGGACAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGAATAGAATTTCTTCGAAATAGCCATTTGAGCTCAGGAAGGACAA  550

seq1  TCATATTTAGAGAAATGAACAGAAATAGCTTTGGTATTTTAAAAAGCCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATTTAGAGAAATGAACAGAAATAGCTTTGGTATTTTAAAAAGCCAC  600

seq1  CCACCAATTGTGTATATTCTTAAATTCTCCTAGCAAACAGTTGTTTACTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCAATTGTGTATATTCTTAAATTCTCCTAGCAAACAGTTGTTTACTA  650

seq1  GGAATTATGTGCCAAAGATGGTCCTAGAGATTATAGGTAATGCCATGAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTATGTGCCAAAGATGGTCCTAGAGATTATAGGTAATGCCATGAAT  700

seq1  CTTGAGTCTGTAAGACACTTTATTATATTATACTTCCTTTCCAGTGCAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGTCTGTAAGACACTTTATTATATTATACTTCCTTTCCAGTGCAAA  750

seq1  GCATGTGACAATTCAGAAAAAGATTCATTCTGAATTCTTCTAGCAATATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTGACAATTCAGAAAAAGATTCATTCTGAATTCTTCTAGCAATATG  800

seq1  ATTGACCATACTTCACAAATATTGAATACATTTATATGACCAGCTATCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACCATACTTCACAAATATTGAATACATTTATATGACCAGCTATCCA  850

seq1  GACAATAGTCAGTCAGTGAGTTTAAACCCTTTAGCATATTCAGACATTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAATAGTCAGTCAGTGAGTTTAAACCCTTTAGCATATTCAGACATTTT  900

seq1  GAAACCTTTCTAATTCTTTGAGTTTAAAATGCAATATTTGAGGTAATCTA  950
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GAAACCTTTCTAATTCTTTGAGTTTAAAATGCAATATTTGAGGT-ATCTA  949

seq1  AAATACGATTATATCTTATATAAGTACAATACCAAAGACAATTCAGTGTA  1000
      ||||||||||||||| ||||||||||| ||||| ||||| ||||||||||
seq2  AAATACGATTATATC-TATATAAGTAC-ATACC-AAGAC-ATTCAGTGTA  995

seq1  ATTTAATGCAAGACAAAAAATGTAATTGAGAGATTTAAATAAATTTTATC  1050
      ||||||||| ||||||||||||| ||||||||||||||||||  ||||||
seq2  ATTTAATGC-AGACAAAAAATGT-ATTGAGAGATTTAAATAA--TTTATC  1041

seq1  TTTGAATTACAAATATTCTACACAAGCTGAATAGAAAATTTAATTTCAAA  1100
      |||||||||| |||||||||| ||  ||||||||||||||| ||||| ||
seq2  TTTGAATTACCAATATTCTAC-CAGCCTGAATAGAAAATTT-ATTTC-AA  1088

seq1  TACCACATAATCCATATAATAGTAACAAATACATG  1135
      ||||| ||    |||||||  |||||||| |||||
seq2  TACCATAT----CATATAAAGGTAACAAA-ACATG  1118


seq1: chr3_3951795_3952870
seq2: B6Ng01-037A17.g_69_1140 (reverse)

seq1  GAGATCAT-GAGTTAGGAGTAGAGAAGCATATCTCTATTGTGAAGTCATC  49
      |||||||| ||||| ||||||| || ||||||||||||||||||||||||
seq2  GAGATCATGGAGTT-GGAGTAGGGAGGCATATCTCTATTGTGAAGTCATC  49

seq1  CGAGAACCAACTTTTATTATAGCTCATATTATAGTTTGTGATTTTATAAC  99
         ||||||   |||| || ||||||   |||||||||||| ||||| ||
seq2  GAGGAACCA--CTTTAATAAAGCTCAATATATAGTTTGTGA-TTTAT-AC  95

seq1  TATGCAGTAGGTATTTGGGAATGCAAAATTATGTTACTAAATGTACAAAG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCAGTAGGTATTTGGGAATGCAAAATTATGTTACTAAATGTACAAAG  145

seq1  GAGATTCAGGTTGTGCCTGTGAGACTAATCTCAATAGAGCATATTAATAT  199
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GAGATTCAGGTTGTGCCTGTGAGACT-ATCTCAATAGAGCATATTAATAT  194

seq1  ATACAGTAAAGAATAGTAATTCAATTACCAATGCTCCCGTAATCTGTCAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGTAAAGAATAGTAATTCAATTACCAATGCTCCCGTAATCTGTCAA  244

seq1  ATAGGAAATATATGAGCTTAGGAAACAGGCATATAATTTTAAATTCAGCT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGAAATATATGAGCTTAGGAAACAGGCATATAATTTTAAATTCAGCT  294

seq1  GTGCATTCTTGTTTATTTTGTTTCTTAATATCTTTGAAGCACCCCCCATG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATTCTTGTTTATTTTGTTTCTTAATATCTTTGAAGCACCCCCCATG  344

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAG-TTTTG  398
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGTTTTTG  394

seq1  TGTGGGAAAATAGTCAATACACATAAGTCAATTCTCATTTTCTTCTCATT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGAAAATAGTCAATACACATAAGTCAATTCTCATTTTCTTCTCATT  444

seq1  GAGTCTCAATGAGATACCATTTTAGCCAAGACCAATGCTACACTGTGTAC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTCAATGAGATACCATTTTAGCCAAGACCAATGCTACACTGTGTAC  494

seq1  TTGGTGTCTAGAGTGTATCTTTCCATTTTGTGTTGAATACAAATACAATC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGTCTAGAGTGTATCTTTCCATTTTGTGTTGAATACAAATACAATC  544

seq1  TATTTAAAGGTGATTGCAAAATATTTGTTTCTTTTCATATAATCATATAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAAAGGTGATTGCAAAATATTTGTTTCTTTTCATATAATCATATAA  594

seq1  TAAATATAAAATATTATTTTTATAATAAATGTATGCTAGTGGTAGCTTTC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATAAAATATTATTTTTATAATAAATGTATGCTAGTGGTAGCTTTC  644

seq1  TAATATCATATGAATAATTTTTACTTTTCTAGCATAAATGAAATATTGTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATCATATGAATAATTTTTACTTTTCTAGCATAAATGAAATATTGTT  694

seq1  TAATAGAGACCAATGTTAATGAACAATGAAAGGAGAAGAATTTTGTTATA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGAGACCAATGTTAATGAACAATGAAAGGAGAAGAATTTTGTTATA  744

seq1  GCTTGAAATATATGGAAATACCTTTAAGGTTTAATCATAATTCCATTAAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGAAATATATGGAAATACCTTTAAGGTTTAATCATAATTCCATTAAG  794

seq1  GATAGATTTAAAATGTTTCAAAATATGCACAGAAAGAATGGGACCGTCCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGATTTAAAATGTTTCAAAATATGCACAGAAAGAATGGGACCGTCCT  844

seq1  CTGATTTCTGTCTTCTAATTTCTTACAGTGACAATTTGCAGCTGAGCCAC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTTCTGTCTTCTAATTTCTTACAGTGACAATTTGCAGCTGAGCCAC  894

seq1  CTGAGGTCACTTTGCACTAGGAAACAGGGAAGACCTTACTAACTCATTTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGTCACTTTGCACTAGGAAACAGGGAAGACCTTACTAACTCATTTT  944

seq1  AATATTAATAGCATTCATCAAGCTGCAAAATAAATGTGCAATAGAATGTT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTAATAGCATTCATCAAGCTGCAAAATAAATGTGCAATAGAATGTT  994

seq1  TCTGCTTAGCTTATGTTGCTTGCACTTCCTGTCTTCTCAACATGTTTCTT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTTAGCTTATGTTGCTTGCACTTCCTGTCTTCTCAACATGTTTCTT  1044

seq1  CCATCTTGTTCAGAACTTCAGAGAATTC  1076
      ||||||||||||||||||||||||||||
seq2  CCATCTTGTTCAGAACTTCAGAGAATTC  1072


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