BAC Information

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BAC

Clone NameB6Ng01-037L16
Chromosome3 (Build37)
Map Location 40,938,787 - 41,110,370
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-037L16.bB6Ng01-037L16.g
ACCDH865502DH865503
length1,0041,015
definitionDH865502|Mus musculus domesticus DNA, BAC clone: B6Ng01-037L16, 5' end.DH865503|Mus musculus domesticus DNA, BAC clone: B6Ng01-037L16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,109,359 - 41,110,370)(40,938,787 - 40,939,820)
sequence
gaattcaaaggagagcaggaaagggaatatgggaaggttaggagggaaga
aagggaagggagaaatgtgattacaatctcaaaaatttttaaaaaatcaa
attagcatactaacttaaatttgattgtacctcatgttgctatttactta
catagttagtaaatttgaatattagtgaatacctcatttatcaggtacta
catgaggctcagaggacttcagtagatgagggccagcctgaagtggagac
ttcccaagacaatgataacagacagcagctgtagcattaaaagtgaagga
aggatgaaggagtttgagaagggtgcagaggccccgcctgagcctggcaa
ccactgtttggtgtctaggggaggagggactgaccgcagcagaggagatg
aggtcctcggtgggaagggaggtggagtgcagaacaggtttaggggagac
tgatccagggtgctggggtgatgaaccctgcgctgagggactgggagttt
gttttaaaggtgctgagaagatgtcactgaaaacgaaacaaggggcatct
tctgctcagtgccttcattttttgtaaataaatactttcataaattcttt
gaaacctcgatacaatgtattttcaccaacactctgacttaactaatccc
agatccatccccatctccctacaccccatctttgtatgctctctctttcc
tccacctccctctgccccaactttgtctcctcctttcttaacttaatctg
aatctttcttgtccacacccattaaagaaaacagactcgccctccccctg
aagcatcaactgttcttgagtttctcggggattggctcatgaaccactgc
atgcttcgaatgcttggctgacttgatctgggtaaattcctatgcaggga
aaaacacagctttgagttctgagtgccagggcctgtctgtccgaaaaact
ggttgctagttctcttaccctgggctctcatgatctactgactcctttct
gccc
gaattcttttctgggcatctagtctcttattgattccagtgttgacttaa
gcagtggctcagagtctggcctggaggagcaagccttgtgtcaccgggtt
tctctggggtgcttgaactctagtgatgctctaccagacatgacaataga
tacttgacacatttttttctttaaggaactaacattaacacatgtgttcc
tagtagatggccagaaactcttgttactgaagagagagaggaatttctgt
gctttgttggtgcctgtttctaaatatcctcgggggcaaagccctaagac
atcctcaataacaacatcacactcctcctggtatttctgcctacacagtg
acatctatttaggcaggtgtcttagtcagggtttctattcctgcacaaac
atcatgaccaagaagcaagttggggaggaaagggtttatttagcttacat
ttacacattgctgttcatcactgaaggaagtcaggactggacctcaagca
ggtcaggaagcaggagctgatacagaggccatggagggatgttctttact
ggcttgcttcccctggcttgctcagcctgctctcttatagaacccaatgc
taccagccccagaaatggttccacccaccaggggcctttcctccttgacc
actaattgagaaaatgccccacagttggatctcatggaggcatttcccca
actgatgctcctttctctgtgataattccagctgtgtcaagtgacacaaa
accagccagtacagcagacaagcagagggcttcacataccatgcatacac
actttgaacaacgcaccaagcaaccttggacctcctgtagaggtttacat
gtatggtcccacctgtagagtttacagtatgatgccctctgaccatggaa
ataggttctcctccccaatgaccatcagtctggatgatgtctatccaatg
cattcctatactcctggtttagaatagaaggtcagcatctcactgttctg
ggaatctgcagtgag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41109359_41110370
seq2: B6Ng01-037L16.b_46_1049 (reverse)

seq1  GGGCAGAAAAGGAGTCAGTAGAATCATGAGAGCCCAGGGTCATGAGAACC  50
      |||||| |||||||||||||| |||||||||||||||||| | ||||| |
seq2  GGGCAG-AAAGGAGTCAGTAG-ATCATGAGAGCCCAGGGT-AAGAGAA-C  46

seq1  AAGCAAACCAGTGTCTTCTGGACATGACAGGCCCCTGGCACTCATGAACT  100
       ||| ||||||| | ||| ||||| |||||| |||||||||||| |||||
seq2  TAGC-AACCAGT-TTTTC-GGACA-GACAGG-CCCTGGCACTCA-GAACT  90

seq1  CAAAGCTGCTGTTTTTCCCTGCATA-GAATCTACACAAGATCAAGTCAGC  149
      |||||||| |||||||||||||||| |||| ||| | |||||||||||||
seq2  CAAAGCTG-TGTTTTTCCCTGCATAGGAATTTAC-CCAGATCAAGTCAGC  138

seq1  C-AGCATTCG-AGCATGCAGTGGTTCATGAGCC-ATCCCCGAGAAACTCA  196
      | |||||||| |||||||||||||||||||||| ||||||||||||||||
seq2  CAAGCATTCGAAGCATGCAGTGGTTCATGAGCCAATCCCCGAGAAACTCA  188

seq1  AGAACAGTTGATGGCTTCAGGGGGAGGGCGAGTCTGTTTTCTTTAATGGG  246
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AGAACAGTTGAT-GCTTCAGGGGGAGGGCGAGTCTGTTTTCTTTAATGGG  237

seq1  TGTGGACAAG-AAGATTCAGATTAAGTTAAAGAAAGGAGGAGACAAAGTT  295
      |||||||||| ||||||||||||||||| |||||||||||||||||||||
seq2  TGTGGACAAGAAAGATTCAGATTAAGTT-AAGAAAGGAGGAGACAAAGTT  286

seq1  GGGGCAGAGGGAGGTGGAGGAAAGAGAGAGCATACAAAGATGGGGTGTAG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCAGAGGGAGGTGGAGGAAAGAGAGAGCATACAAAGATGGGGTGTAG  336

seq1  GGAGATGGGGATGGATCTGGGATTAGTTAAGTCAGAGTGTTGGTGAAAAT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATGGGGATGGATCTGGGATTAGTTAAGTCAGAGTGTTGGTGAAAAT  386

seq1  ACATTGTATCGAGGTTTCAAAGAATTTATGAAAGTATTTATTTAC-AAAA  444
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  ACATTGTATCGAGGTTTCAAAGAATTTATGAAAGTATTTATTTACAAAAA  436

seq1  ATGAAGGCACTGAGCAGAAGATGCCCCTTGTTTCGTTTTCAGTGACATCT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGGCACTGAGCAGAAGATGCCCCTTGTTTCGTTTTCAGTGACATCT  486

seq1  TCTCAGCACCTTTAAAACAAACTCCCAGTCCCTCAGCGCAGGGTTCATCA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGCACCTTTAAAACAAACTCCCAGTCCCTCAGCGCAGGGTTCATCA  536

seq1  CCCCAGCACCCTGGATCAGTCTCCCCTAAACCTGTTCTGCACTCCACCTC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGCACCCTGGATCAGTCTCCCCTAAACCTGTTCTGCACTCCACCTC  586

seq1  CCTTCCCACCGAGGACCTCATCTCCTCTGCTGCGGTCAGTCCCTCCTCCC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCCACCGAGGACCTCATCTCCTCTGCTGCGGTCAGTCCCTCCTCCC  636

seq1  CTAGACACCAAACAGTGGTTGCCAGGCTCAGGCGGGGCCTCTGCACCCTT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGACACCAAACAGTGGTTGCCAGGCTCAGGCGGGGCCTCTGCACCCTT  686

seq1  CTCAAACTCCTTCATCCTTCCTTCACTTTTAATGCTACAGCTGCTGTCTG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAACTCCTTCATCCTTCCTTCACTTTTAATGCTACAGCTGCTGTCTG  736

seq1  TTATCATTGTCTTGGGAAGTCTCCACTTCAGGCTGGCCCTCATCTACTGA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCATTGTCTTGGGAAGTCTCCACTTCAGGCTGGCCCTCATCTACTGA  786

seq1  AGTCCTCTGAGCCTCATGTAGTACCTGATAAATGAGGTATTCACTAATAT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTCTGAGCCTCATGTAGTACCTGATAAATGAGGTATTCACTAATAT  836

seq1  TCAAATTTACTAACTATGTAAGTAAATAGCAACATGAGGTACAATCAAAT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATTTACTAACTATGTAAGTAAATAGCAACATGAGGTACAATCAAAT  886

seq1  TTAAGTTAGTATGCTAATTTGATTTTTTAAAAATTTTTGAGATTGTAATC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTTAGTATGCTAATTTGATTTTTTAAAAATTTTTGAGATTGTAATC  936

seq1  ACATTTCTCCCTTCCCTTTCTTCCCTCCTAACCTTCCCATATTCCCTTTC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTCTCCCTTCCCTTTCTTCCCTCCTAACCTTCCCATATTCCCTTTC  986

seq1  CTGCTCTCCTTTGAATTC  1012
      ||||||||||||||||||
seq2  CTGCTCTCCTTTGAATTC  1004

seq1: chr3_40938787_40939820
seq2: B6Ng01-037L16.g_69_1083

seq1  GAATTCTTTTCTGGGCATCTAGTCTCTTATTGATTCCAGTGTTGACTTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTCTGGGCATCTAGTCTCTTATTGATTCCAGTGTTGACTTAA  50

seq1  GCAGTGGCTCAGAGTCTGGCCTGGAGGAGCAAGCCTTGTGTCACCGGGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGGCTCAGAGTCTGGCCTGGAGGAGCAAGCCTTGTGTCACCGGGTT  100

seq1  TCTCTGGGGTGCTTGAACTCTAGTGATGCTCTACCAGACATGACAATAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGGGGTGCTTGAACTCTAGTGATGCTCTACCAGACATGACAATAGA  150

seq1  TACTTGACACATTTTTTTCTTTAAGGAACTAACATTAACACATGTGTTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGACACATTTTTTTCTTTAAGGAACTAACATTAACACATGTGTTCC  200

seq1  TAGTAGATGGCCAGAAACTCTTGTTACTGAAGAGAGAGAGGAATTTCTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAGATGGCCAGAAACTCTTGTTACTGAAGAGAGAGAGGAATTTCTGT  250

seq1  GCTTTGTTGGTGCCTGTTTCTAAATATCCTCGGGGGCAAAGCCCTAAGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGTTGGTGCCTGTTTCTAAATATCCTCGGGGGCAAAGCCCTAAGAC  300

seq1  ATCCTCAATAACAACATCACACTCCTCCTGGTATTTCTGCCTACACAGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCAATAACAACATCACACTCCTCCTGGTATTTCTGCCTACACAGTG  350

seq1  ACATCTATTTAGGCAGGTGTCTTAGTCAGGGTTTCTATTCCTGCACAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTATTTAGGCAGGTGTCTTAGTCAGGGTTTCTATTCCTGCACAAAC  400

seq1  ATCATGACCAAGAAGCAAGTTGGGGAGGAAAGGGTTTATTTAGCTTACAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGACCAAGAAGCAAGTTGGGGAGGAAAGGGTTTATTTAGCTTACAT  450

seq1  TTACACATTGCTGTTCATCACTGAAGGAAGTCAGGACTGGACCTCAAGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACATTGCTGTTCATCACTGAAGGAAGTCAGGACTGGACCTCAAGCA  500

seq1  GGTCAGGAAGCAGGAGCTGATACAGAGGCCATGGAGGGATGTTCTTTACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGGAAGCAGGAGCTGATACAGAGGCCATGGAGGGATGTTCTTTACT  550

seq1  GGCTTGCTTCCCCTGGCTTGCTCAGCCTGCTCTCTTATAGAACCCAAGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GGCTTGCTTCCCCTGGCTTGCTCAGCCTGCTCTCTTATAGAACCCAATGC  600

seq1  TACCAG-CCCAGAAATGGTTCCACCCACCAGGGGCCTTTCCTCCTTGACC  649
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAGCCCCAGAAATGGTTCCACCCACCAGGGGCCTTTCCTCCTTGACC  650

seq1  ACTAATTGAGAAAATGCCCCACAGTTGGATCTCATGGAGGCATTTCCCCA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATTGAGAAAATGCCCCACAGTTGGATCTCATGGAGGCATTTCCCCA  700

seq1  ACTGATGCTCCTTTCTCTGTGATAATTCCAGCTGTGTCAAGTTGACACAA  749
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  ACTGATGCTCCTTTCTCTGTGATAATTCCAGCTGTGTCAAG-TGACACAA  749

seq1  AACCAGCCAGTACAGCAGACAAGCAGAGGGCTTCACATACCATGCATACA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AACCAGCCAGTACAGCAGACAAGCAGAGGGCTTCACATACCATGCATAC-  798

seq1  ACACTTTTGAACAACGCACCAAGCAACCTTGGACTCCCTGTAGAGGTTTA  849
      |||| |||||||||||||||||||||||||||||  ||||||||||||||
seq2  ACAC-TTTGAACAACGCACCAAGCAACCTTGGACCTCCTGTAGAGGTTTA  847

seq1  CATGTATGGTCCCACCTGTAGAGGTTTACATGTATGATGCCCTCTGAACA  899
      |||||||||||||||||||||| ||||||| |||||||||||||||| ||
seq2  CATGTATGGTCCCACCTGTAGA-GTTTACA-GTATGATGCCCTCTGACCA  895

seq1  ATGAAATAGGTTTCTCCTCCCCCAATGACCATCAGTCTTGGATGATGTCT  949
        |||||||| ||||||| |||||||||||||||||| ||||||||||||
seq2  TGGAAATAGG-TTCTCCT-CCCCAATGACCATCAGTC-TGGATGATGTCT  942

seq1  ATTCAAATGCATCTCTAATACATCCTGGTTTAAGAGTAGGAGGGTCAAGC  999
      | || ||||||| ||  |||| ||||||||| ||| || || |||| |||
seq2  A-TCCAATGCAT-TCCTATAC-TCCTGGTTT-AGAATA-GAAGGTC-AGC  986

seq1  CATTCTCAGCTGGTTCTGGGAATACATGCAGTGAG  1034
         ||||| || |||||||||||   |||||||||
seq2  --ATCTCA-CT-GTTCTGGGAAT--CTGCAGTGAG  1015