BAC Information

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BAC

Clone NameB6Ng01-039A02
Chromosome3 (Build37)1 (Build37)
Map Location 41,058,694 - 41,059,21621,909,751 - 21,910,911
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-039A02.bB6Ng01-039A02.g
ACCDH866400DH866401
length1,0411,130
definitionDH866400|Mus musculus domesticus DNA, BAC clone: B6Ng01-039A02, 5' end.DH866401|Mus musculus domesticus DNA, BAC clone: B6Ng01-039A02, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,058,694 - 41,059,216)(21,909,751 - 21,910,911)
sequence
gaattctttgttcagctctgagccccattttttaatggggttatttgatt
ttctggagtccaccttcttgagttctttatatatattggatattagtccc
ctatctgatttaggatagttaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgttttttgccttgcaaaagctttgcagtttca
tgaggttccatttgtcaattctcaatcttacagcacaagccattgctgtt
ctattcaggaattttccccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtggagttccttaa
tcaacttagatttgaccttagtacaaggagatagaaatgaatcaattcgc
attcttctacatgataactgagagttgtaccagcaccatttgttgaaaat
gctgtcttttttccactggatggttttagctcccttgtcaaagatcaagt
gaccataggtgtgtgggttcatctctgggtcttcaattctgttctattgg
tctacttgtctgtcactataccagtaccatgctgtttttatcacaattgc
tctgtggtacagctttaggtcaggcatggtcattccaccagaggttcttt
tatccttgagaagagtttttgctatcctaggtattttgttattccagatg
aatctgccgattgccctttctaattcgttgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagcttttt
ttactatattgatcctgccaatccatgagcatgggagatctttccatctt
ctgagatctttaatttcgttcttcagagacttgaagttttatcacacaga
tctttcacttccttagttagagtcacgccaaggtattttatatattctgt
gactactgagaagggtgttgtttccctaatttcttcttcagctgtttatc
ctttgtgtatagaaggccattgacttgtgttgagtaattta
gaattcaaaaggcacagggactgaatttaaatatcattgtcgttccagaa
taaattaacacagactgcttttatgattttccctgaggattaagcttctc
ctttcaacagataacaatttcatattttaaaaaaatcccatggatgagaa
atatagttgccctgatagtttaatgttagatcatgagtaagccttatata
gtctaagactgttttagccacacacttttgaaaatcaagtagtccctgag
tgccaatatataatgcctctggaaaacatgaacagggatttttaaagatt
tgtttgtttcattgtctcataaacacataagcaaagtaaaatgtctgtct
cgccactgttacatgctcatacacatttactcactgagtaacaaagctat
tctatgaagtgagctcagaattagctgagagcagaaccttcctgtgaata
ttagaagatgcatctcaatacccaggccctagcttcctcagactctccac
taggcatcctttgaatcaagtctcaactccaattacctaaagagtttaag
tataagatttggggaacttgaaaagtaacttttttcctgtaaagccaaaa
cattggaagatacagagatgaagccacatagatgatagatgaatagacaa
atggaaaggcagatgaaatatttttctttatttgagaattagttgtgttg
tattatttagaatatatttttcatctttaagtcttaaagttagaaatgta
gctgataaaatcatactgccatgtaataaaacaacaatgggccagtggtt
tagtgcattctactgtactataacagtctgcaattaattctaagactagg
cagctcattcattctaacctcacacagaagatgttgttggagaatgttta
gtcccattttaccctaacaagctgatttgttagtattataatagtctaga
aacatatttccaggtctactcagggacctcactcacttactgaccaaagt
gagcattttaagtagtagtctgagctgagatgaccactagctaccttcat
ttagaatactttcacttagcatctactggctcggatgatccccccaaaag
aaaggttcagttttgcatttctgagcatga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41058694_41059216
seq2: B6Ng01-039A02.b_565_1081 (reverse)

seq1  AAATTAACTCAA-ACAAGTCAATGGCCTTTCTCTACACAAAGAATAAACA  49
      ||||| |||||| |||||||||||||| |||| ||||||||| |||||||
seq2  AAATT-ACTCAACACAAGTCAATGGCC-TTCTATACACAAAGGATAAACA  48

seq1  GGCTGAGAAAGAAATTAGGGAAACAACACCCTTCTCAATAGTCACAAATA  99
       |||||  ||||||||||||||||||||||||||||| |||||||| |  
seq2  -GCTGAAGAAGAAATTAGGGAAACAACACCCTTCTCAGTAGTCACAGAAT  97

seq1  ATATAAAATATCTTGGCATGACTCTAACTAAGGAAGTGAAAGATCTGTAT  149
      |||||||||| |||||| |||||||||||||||||||||||||||||| |
seq2  ATATAAAATACCTTGGCGTGACTCTAACTAAGGAAGTGAAAGATCTGTGT  147

seq1  GACAAGAACTTCAAGTCTCTGAAGAAAGAAATTAAAGAAGATCTCAGAAG  199
      || || |||||||||||||||||||| |||||||   |||||||||||||
seq2  GATAA-AACTTCAAGTCTCTGAAGAACGAAATTA---AAGATCTCAGAAG  193

seq1  ATGGAAAGATCTCCCATGCTCATGGATTGGCAGGATCAACATTGTAAAAA  249
      ||||||||||||||||||||||||||||||||||||||| || |||||||
seq2  ATGGAAAGATCTCCCATGCTCATGGATTGGCAGGATCAATATAGTAAAAA  243

seq1  TGGCTATCTTGCCAAAAGCAATCTACAGATTCAATGCAATCCCCATCAAA  299
        ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTATCTTGCCAAAAGCAATCTACAGATTCAATGCAATCCCCATCAAA  293

seq1  ATTCCAACTCAATTCTTCAACGAATTTGAAAGAGCAATCTGCAAATTCAT  349
      |||||||||||||||||||||||||| ||||| |||||| ||| ||||||
seq2  ATTCCAACTCAATTCTTCAACGAATTAGAAAGGGCAATCGGCAGATTCAT  343

seq1  CTGGAATAACAAAAAACCTAGGATAGCAAAAACTCTTCTCAAGGATAACA  399
      |||||||||||||| ||||||||||||||||||||||||||||||||| |
seq2  CTGGAATAACAAAATACCTAGGATAGCAAAAACTCTTCTCAAGGATAAAA  393

seq1  GAACCTCTGGTGGAATCACCATGCCTGACCTAAAGCTTTACTACAGAGCA  449
      |||||||||||||||| |||||||||||||||||||| ||| ||||||||
seq2  GAACCTCTGGTGGAATGACCATGCCTGACCTAAAGCTGTACCACAGAGCA  443

seq1  ATTGTGATAAAAACTGCATGGTACTGGTATAGTGACAGACAAGCAGACCA  499
      |||||||||||||| |||||||||||||||||||||||||||| ||||||
seq2  ATTGTGATAAAAACAGCATGGTACTGGTATAGTGACAGACAAGTAGACCA  493

seq1  ATGGAATAGAATTGAAGACTCAGA  523
      || ||| |||||||||||| ||||
seq2  ATAGAACAGAATTGAAGACCCAGA  517

seq1: chr1_21909751_21910911
seq2: B6Ng01-039A02.g_66_1195

seq1  GAATTCAAAAGGCACAGGGACTGAATTTAAATATCATTGTCGTTCCAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAAGGCACAGGGACTGAATTTAAATATCATTGTCGTTCCAGAA  50

seq1  TAAATTAACACAGACTGCTTTTATGATTTTCCCTGAGGATTAAGCTTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTAACACAGACTGCTTTTATGATTTTCCCTGAGGATTAAGCTTCTC  100

seq1  CTTTCAACAGATAACAATTTCATATTTTAAAAAAATCCCATGGATGAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAACAGATAACAATTTCATATTTTAAAAAAATCCCATGGATGAGAA  150

seq1  ATATAGTTGCCCTGATAGTTTAATGTTAGATCATGAGTAAGCCTTATATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGTTGCCCTGATAGTTTAATGTTAGATCATGAGTAAGCCTTATATA  200

seq1  GTCTAAGACTGTTTTAGCCACACACTTTTGAAAATCAAGTAGTCCCTGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAAGACTGTTTTAGCCACACACTTTTGAAAATCAAGTAGTCCCTGAG  250

seq1  TGCCAATATATAATGCCTCTGGAAAACATGAACAGGGATTTTTAAAGATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAATATATAATGCCTCTGGAAAACATGAACAGGGATTTTTAAAGATT  300

seq1  TGTTTGTTTCATTGTCTCATAAACACATAAGCAAAGTAAAATGTCTGTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTTTCATTGTCTCATAAACACATAAGCAAAGTAAAATGTCTGTCT  350

seq1  CGCCACTGTTACATGCTCATACACATTTACTCACTGAGTAACAAAGCTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCACTGTTACATGCTCATACACATTTACTCACTGAGTAACAAAGCTAT  400

seq1  TCTATGAAGTGAGCTCAGAATTAGCTGAGAGCAGAACCTTCCTGTGAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGAAGTGAGCTCAGAATTAGCTGAGAGCAGAACCTTCCTGTGAATA  450

seq1  TTAGAAGATGCATCTCAATACCCAGGCCCTAGCTTCCTCAGACTCTCCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAGATGCATCTCAATACCCAGGCCCTAGCTTCCTCAGACTCTCCAC  500

seq1  TAGGCATCCTTTGAATCAAGTCTCAACTCCAATTACCTAAAGAGTTTAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCATCCTTTGAATCAAGTCTCAACTCCAATTACCTAAAGAGTTTAAG  550

seq1  TATAAGATTTGGGGAACTTGAAAAGTAACTTTTTTCCTGTAAAGCCAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGATTTGGGGAACTTGAAAAGTAACTTTTTTCCTGTAAAGCCAAAA  600

seq1  CATTGGAAGATACAGAGATGAAGCCACATAGATGATAGATGAATAGACAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGAAGATACAGAGATGAAGCCACATAGATGATAGATGAATAGACAA  650

seq1  ATGGAAAGGCAGATGAAATATTTTTCTTTATTTGAGAATTAGTTGTGTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAAGGCAGATGAAATATTTTTCTTTATTTGAGAATTAGTTGTGTTG  700

seq1  TATTATTTAGAATATATTTTTCATCTTTAAGTCTTAAAGTTAGAAATGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTTAGAATATATTTTTCATCTTTAAGTCTTAAAGTTAGAAATGTA  750

seq1  GCTGATAAAATCATACTGCCATGTAATAAAACAACAATGGGCCAGTGGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATAAAATCATACTGCCATGTAATAAAACAACAATGGGCCAGTGGTT  800

seq1  TAGTGCATTCTACTGTACTATAACAGTCTGCAATTAATTCTAAGACTAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGCATTCTACTGTACTATAACAGTCTGCAATTAATTCTAAGACTAGG  850

seq1  CAGCTCATTCATTCTAACCTCACACAGAAGATGTTGTTGGAGAATGTTTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCATTCATTCTAACCTCACACAGAAGATGTTGTTGGAGAATGTTTA  900

seq1  GTCCAATTTAACCCTAACAAAGCTGATTTGTTAGTATTATAATAGTCTAG  950
      |||| |||| |||||||| |||||||||||||||||||||||||||||||
seq2  GTCCCATTTTACCCTAAC-AAGCTGATTTGTTAGTATTATAATAGTCTAG  949

seq1  AAAACAATATTTCCAGGGTCTACTCAGGGACCCCACTCAACTTACTGAAC  1000
      |||   ||||||||| |||||||||||||||| ||||| |||||||| ||
seq2  AAA--CATATTTCCA-GGTCTACTCAGGGACCTCACTC-ACTTACTG-AC  994

seq1  CAAAGTGAAGGCATTTTAAGGTAGTAGTTCTGAGCATAGAGAATGACCAA  1050
      ||||||||  ||||||||| ||||||| |||||||  ||   |||||| |
seq2  CAAAGTGA--GCATTTTAA-GTAGTAG-TCTGAGCTGAG---ATGACC-A  1036

seq1  CTAGCTTACCTTCCAATTTAAGAAATACTTTCACTTAGCCATTCTTACTG  1100
      ||||| |||||||  |||||   ||||||||||||||| |||   |||| 
seq2  CTAGC-TACCTTC--ATTTA--GAATACTTTCACTTAG-CAT--CTACT-  1077

seq1  GGCTCAGATGAAACCCCCCCCCAAAAAAAAAGTTTCAATTTTTGCATTTT  1150
      ||||| |||||     |||||||||| ||| |||   | ||||||| |||
seq2  GGCTCGGATGA----TCCCCCCAAAAGAAAGGTT--CAGTTTTGCA-TTT  1120

seq1  CTGAAGCATGA  1161
      ||| |||||||
seq2  CTG-AGCATGA  1130