BAC Information

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BAC

Clone NameB6Ng01-039A20
Chromosome3 (Build37)
Map Location 10,777,871 - 10,778,951
singlet/doubletsinglet
Overlap genenone
Upstream genePag1, LOC621504, Fabp5, LOC100041480, Pmp2, Fabp9, Fabp4, 1700008G05Rik, Impa1, Slc10a5, Zfand1, Chmp4c, Snx16
Downstream geneLOC670564, LOC383826, EG667978, LOC667999
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-039A20.bB6Ng01-039A20.g
ACCDH866434DH866435
length6361,078
definitionDH866434|Mus musculus domesticus DNA, BAC clone: B6Ng01-039A20, 5' end.DH866435|Mus musculus domesticus DNA, BAC clone: B6Ng01-039A20, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctgtaggcttgttgtatgttcatgggcatcttttttttttaggtt
tgggaagttttcttctataattttgttaagatatctgctggccctttaag
ttgaaaatcttcattctcatttactcctattatcataggtttggtcttct
cattgtgtcctggatttcctggatgtttttagttaggatctttttgtatt
ttgtatgttctttgattgttgtgccaatgttctctatggaatcttctgca
cctgagattctctcttccatctcttgtgttctgttgctgatgctcgcatc
tttggttccagatttctttcctagggtttctatctccagcgttgcctcac
tttgggttttctttattgtgtctacttccctttttaggtcttggatggtt
ttattcaattccatcacctatttggtcgtgttttcctgcaattctttaag
ggattcttgtggttcctctttaaggtttttctaactgtttagcagtgttt
tcctgtatttctttaagtgagttattaaagtccttcttgatgtcctctac
catcatcatgagatatgcttttagatccggatctatcttttcgggtgtgt
tggggtgtccaggactgggtggggtgggagtgttgc

gaattcatacattgtaccaatgtgcatttgcatcatagaatctgtgaagt
taataaaagttgtatttattggctgtacaaagtatcattttatttttctc
actaggtgaagatcagtatttctcattggggagaacacacacctctgaga
acccttgtcccatgacgcttgtacatgacaggctcattttgactcattta
ctctttattttcactttatcttattgtatttgttcctccttgatgttgtg
gctagaacatatatttttgtaagcatagaaaatgctttttgttgtgttta
tgtgtttctttcagaaagagaaaagaatgacaaaatttacatttttcttt
aaaatgtagagctgtgttattttctgcctttggcttattttcctaaccat
aattcattggatgttttaaaggaaaaaataaacaaaagagaaaaaaaaac
tttcgatttctttttgttttaaaagatataaaaaatattattttgaggaa
tttgcctctcaaaatgaatgtttttaggaatattgaaataataatttata
gatatttaaatctcatttaaagaatttttacagattgtaaaatctccctt
gcagtttgtatttatttaccttctgctccatatttttccctgcctatcgc
aggaggccaggtgggacgctttctggcatcacgctgacatataggaggtt
ttggtttctggggcctttagtgttttgaaactttggaatggagtttctca
cccagtatttgatcaggaagaaatgcttagaatgagggctaggcaagcag
gaaagggaagcacagaactttgaagcacagactggctgttagaaaggcta
ggatgtaaactgaccttaatccttcccactgacagacgccaggaagctaa
gagagaagaacacggaagaagcaccaaggaaagggggccttgtgagctag
gaatggaggcaggcacggctgaaaactgggctacacagaacagtaagcaa
cacatatgaaatgaaggatcttgggaaactattagatacttgcaggaagt
tagatattcacagctcctttaatggcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_10777871_10778951
seq2: B6Ng01-039A20.g_64_1141

seq1  GAATTCATACATTGTACCAATGTGCATTTGCATCATAGAATCTGTGAAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATACATTGTACCAATGTGCATTTGCATCATAGAATCTGTGAAGT  50

seq1  TAATAAAAGTTGTATTTATTGGCTGTACAAAGTATCATTTTATTTTTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAAAGTTGTATTTATTGGCTGTACAAAGTATCATTTTATTTTTCTC  100

seq1  ACTAGGTGAAGATCAGTATTTCTCATTGGGGAGAACACACACCTCTGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGGTGAAGATCAGTATTTCTCATTGGGGAGAACACACACCTCTGAGA  150

seq1  ACCCTTGTCCCATGACGCTTGTACATGACAGGCTCATTTTGACTCATTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTGTCCCATGACGCTTGTACATGACAGGCTCATTTTGACTCATTTA  200

seq1  CTCTTTATTTTCACTTTATCTTATTGTATTTGTTCCTCCTTGATGTTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTATTTTCACTTTATCTTATTGTATTTGTTCCTCCTTGATGTTGTG  250

seq1  GCTAGAACATATATTTTTGTAAGCATAGAAAATGCTTTTTGTTGTGTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGAACATATATTTTTGTAAGCATAGAAAATGCTTTTTGTTGTGTTTA  300

seq1  TGTGTTTCTTTCAGAAAGAGAAAAGAATGACAAAATTTACATTTTTCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTCTTTCAGAAAGAGAAAAGAATGACAAAATTTACATTTTTCTTT  350

seq1  AAAATGTAGAGCTGTGTTATTTTCTGCCTTTGGCTTATTTTCCTAACCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTAGAGCTGTGTTATTTTCTGCCTTTGGCTTATTTTCCTAACCAT  400

seq1  AATTCATTGGATGTTTTAAAGGAAAAAATAAACAAAAGAGAAAAAAAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCATTGGATGTTTTAAAGGAAAAAATAAACAAAAGAGAAAAAAAAAC  450

seq1  TTTCGATTTCTTTTTGTTTTAAAAGATATAAAAAATATTATTTTGAGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCGATTTCTTTTTGTTTTAAAAGATATAAAAAATATTATTTTGAGGAA  500

seq1  TTTGCCTCTCAAAATGAATGTTTTTAGGAATATTGAAATAATAATTTATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCTCTCAAAATGAATGTTTTTAGGAATATTGAAATAATAATTTATA  550

seq1  GATATTTAAATCTCATTTAAAGAATTTTTACAGATTGTAAAATCTCCCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTTAAATCTCATTTAAAGAATTTTTACAGATTGTAAAATCTCCCTT  600

seq1  GCAGTTTGTATTTATTTACCTTCTGCTCCATATTTTTCCCTGCCTATCGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTTGTATTTATTTACCTTCTGCTCCATATTTTTCCCTGCCTATCGC  650

seq1  AGGAGGCCAGGTGGGACGCTTTCTGGCATCACGCTGACATATAGGAGGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGCCAGGTGGGACGCTTTCTGGCATCACGCTGACATATAGGAGGTT  700

seq1  TTGGTTTCTGGGGCCTTTAGTGTTTTGAAACTTTGGAATGGAGTTTCTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTTCTGGGGCCTTTAGTGTTTTGAAACTTTGGAATGGAGTTTCTCA  750

seq1  CCCAGTATTTGATCAGGAAGAAATGCTTAGAATGAGGGCTAGGCAAGCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTATTTGATCAGGAAGAAATGCTTAGAATGAGGGCTAGGCAAGCAG  800

seq1  GAAAGGGAAGCACAGAACTTTGAAGCACAGACTGGCTGTTAGAAAGGCTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGGAAGCACAGAACTTTGAAGCACAGACTGGCTGTTAGAAAGGCTA  850

seq1  GGATGTAAACTGACCTTAATCCTTCCCACTGACAGACGCCAGGAAGCTAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTAAACTGACCTTAATCCTTCCCACTGACAGACGCCAGGAAGCTAA  900

seq1  GAGAGAAGAACACGGAAGAAAGCACCAAGGAAAGGGGGCCTTGTGAGCTA  950
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GAGAGAAGAACACGGAAG-AAGCACCAAGGAAAGGGGGCCTTGTGAGCTA  949

seq1  GGAATGGAGGCAGGCACGGCTGAAAACTGGGCTAACACAGAACAGTAAGC  1000
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GGAATGGAGGCAGGCACGGCTGAAAACTGGGCT-ACACAGAACAGTAAGC  998

seq1  AACACATATGAAATGAAGGATC-TGGGAAACTATTAGATTACCTGCAGGA  1049
      |||||||||||||||||||||| ||||||||||||||| ||| |||||||
seq2  AACACATATGAAATGAAGGATCTTGGGAAACTATTAGA-TACTTGCAGGA  1047

seq1  AGTTAGTATATCCACAGCTCCCTTTATGGCAT  1081
      |||||| |||| ||||||||| || |||||||
seq2  AGTTAG-ATATTCACAGCTCCTTTAATGGCAT  1078


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