BAC Information

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BAC

Clone NameB6Ng01-039C18
Chromosome3 (Build37)
Map Location 65,367,791 - 65,498,817
singlet/doubletdoublet
Overlap geneLOC545530, LOC100040978, EG624866
Upstream gene4930518C23Rik, EG667069, LOC100040918, 4933425M15Rik, LOC670110, Kcnab1, Ssr3, EG433604, EG667093, LOC100041083, 4931440P22Rik, Tiparp
Downstream geneCcnl1, LOC625048, Veph1, Tpi-rs2, Ptx3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-039C18.bB6Ng01-039C18.g
ACCDH866516DH866517
length1,0631,221
definitionDH866516|Mus musculus domesticus DNA, BAC clone: B6Ng01-039C18, 5' end.DH866517|Mus musculus domesticus DNA, BAC clone: B6Ng01-039C18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,497,758 - 65,498,817)(65,367,791 - 65,369,030)
sequence
agatcatatctttggatgtgataccttgccagagcagccatgatgctgga
ctaaaactcctctacagattttcgcttgacaggatctagaatcgccttgg
agaaaaatatttgagttaggttgactgagctgaaaagacccaccctcaat
gtgggtagaacatccactgagcttgggtcctagactgcacacaatggagg
aacaagcattcatcatcctctgcctcctggctgcaggtaaagtgaccagt
gctttacgttcctgccaccaggatctcccaccatcatggactttaccctc
aaactgcaagccaataataaactcttcttcttaaagctgctggtgtatct
taccatacccacagaaaaagtaactataaaacaccagcgaatgaaaagtc
agaattaaaaaagaccagactcttcctgtgagaggaaaagctggacagta
tcaggaacacaaggatgacagaacaatgtgggaagatacaaacaggtaac
agagaaaagtaagtacaagtgaggtctaccattttctctggggaaataca
gccagtaatggccaccgattcaagctcaaacacactacactacgctgctt
gccagactagagtcatcagtagctgtcagggaggtgctgttccttcctag
acacaattcccacaagaactgtgagctaggggctagtgagatggctcagt
ggttaagagcgccgactgctcttctgaaggtcccgagttcaaatcccagc
aaccacatggtggctcacaaccatccataacgaaatctgatgccctcttc
tggagtgtctgaagacagctacagtgtacttacatttaataaataaataa
atctttgggaaaaaaaaaaaaagaactgtgagctggagcgagactcatgt
gacatggggctggatacaccatgtgtagagaacagcctttcaagtgcaac
agaagtgtggtgcatgcctgaagctgagatgttttacgagtttcctggag
tgactatacgtgtgttgtgtgttggtgtgtataataatataaattggata
aatgaaaggtagg
gaattcagtgacgatttaccattcatctagtgtttattgagtctctattg
tataccaggcacaggtgtaggtgctgggctacaacaatcaagaaacattt
tcctccctggccttcagaagctcccattgctagctctcaaaaagtccaac
acagaaccaaagcccttggcaagcacagacgctgcactcagccagtggta
ctttcagtaaatgtgtgcccacgttgcttaggagacaggccatttgggtg
tgctatccagaggacagggcacagttaggcttgggatcagaggaacctga
gcctagcctgagtacttttggactctgtgactagcatacttgctgtgtgg
ccctggaccaccacctgaccccctgcatctgtttcatctctgacaaggca
ggaatttgacattgtgtgcctatctccaagggaagtatgtgaatcagtgt
ttggaaagtctgtgtcagttgaaaggacaaataaatgcactgagatgggt
ggccagccccggtgcagcttgctcactgctcggccttttcaggctacccg
tgtgtaaacacaggaccatgtcgctaaccaccagctgtacaaaggcacac
acaggctaaggggagccagagagaaacagccaggcctttgggacaggagc
tcttttctctggctccttatttcactctttcaagggaagactcatccagc
aaatgctggaagtacccaggactgatggggttcattccttcagcagaaac
aaaatgtttttttgtggcaggcatttactttcagaggtgctataagcagc
cagtgactgtaggcacatttccaggttcttcaggtggaagtcatatgact
cccacaaaagagttcgacctggtaccattcagcgcttcagagaagcagca
gcactgggtttgagttatataggtctctgccaacagctgagagagaggca
gagtataattaattactaagtttttctctcccatctgtctgatgtctttc
tgcatttgggaactactagatattttgatatggtgatttataatgaataa
agctacttcaaaacgacagggaaagccatggtcctcgttatctaattaaa
atacatgggaaaacctacccgtagcagacaaacagagtctggagctgtct
accagagtgtgacaagaaattcggattctcactaatacctttcatacttg
gacagaaccatatattcttaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_65497758_65498817
seq2: B6Ng01-039C18.b_55_1117 (reverse)

seq1  CCTA-CTTTCA-TTATCCAA-TTATATATTTATACACA-CAACACAC-AC  45
      |||| |||||| |||||||| ||||||  ||||||||| |||||||| ||
seq2  CCTACCTTTCATTTATCCAATTTATATTATTATACACACCAACACACAAC  50

seq1  ACACGTATTAGTCACTCCAGGAAACTCGTAAAACATCTCAGCTTCAGGCA  95
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGTA-TAGTCACTCCAGGAAACTCGTAAAACATCTCAGCTTCAGGCA  99

seq1  TGCACCACACTTCTGTTGCACTTGAGAGGCTGTTTCTCTACACATGGTGT  145
      ||||||||||||||||||||||||| |||||| |||||||||||||||||
seq2  TGCACCACACTTCTGTTGCACTTGAAAGGCTG-TTCTCTACACATGGTGT  148

seq1  ATCCAGCCCCATGTCACATGAGTCTCGCTCCAGCTCACAGTTCTTTTTTT  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGCCCCATGTCACATGAGTCTCGCTCCAGCTCACAGTTCTTTTTTT  198

seq1  TTTTTTCCCAAAGATTTATTTATTTATTAAATGTAAGTACACTGTAGCTG  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCCCAAAGATTTATTTATTTATTAAATGTAAGTACACTGTAGCTG  248

seq1  TCTTCAGACACTCCAGAAGAGGGCATCAGATTTCGTTATGGATGGTTGTG  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAGACACTCCAGAAGAGGGCATCAGATTTCGTTATGGATGGTTGTG  298

seq1  AGCCACCATGTGGTTGCTGGGATTTGAACTCGGGACCTTCAGAAGAGCAG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACCATGTGGTTGCTGGGATTTGAACTCGGGACCTTCAGAAGAGCAG  348

seq1  TCGGCGCTCTTAACCACTGAGCCATCTCACTAGCCCCTAGCTCACAGTTC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGCGCTCTTAACCACTGAGCCATCTCACTAGCCCCTAGCTCACAGTTC  398

seq1  TTGTGGGAATTGTGTCTAGGAAGGAACAGCACCTCCCTGACAGCTACTGA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGGAATTGTGTCTAGGAAGGAACAGCACCTCCCTGACAGCTACTGA  448

seq1  TGACTCTAGTCTGGCAAGCAGCGTAGTGTAGTGTGTTTGAGCTTGAATCG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCTAGTCTGGCAAGCAGCGTAGTGTAGTGTGTTTGAGCTTGAATCG  498

seq1  GTGGCCATTACTGGCTGTATTTCCCCAGAGAAAATGGTAGACCTCACTTG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCCATTACTGGCTGTATTTCCCCAGAGAAAATGGTAGACCTCACTTG  548

seq1  TACTTACTTTTCTCTGTTACCTGTTTGTATCTTCCCACATTGTTCTGTCA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTACTTTTCTCTGTTACCTGTTTGTATCTTCCCACATTGTTCTGTCA  598

seq1  TCCTTGTGTTCCTGATACTGTCCAGCTTTTCCTCTCACAGGAAGAGTCTG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGTGTTCCTGATACTGTCCAGCTTTTCCTCTCACAGGAAGAGTCTG  648

seq1  GTCTTTTTTAATTCTGACTTTTCATTCGCTGGTGTTTTATAGTTACTTTT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTTTTAATTCTGACTTTTCATTCGCTGGTGTTTTATAGTTACTTTT  698

seq1  TCTGTGGGTATGGTAAGATACACCAGCAGCTTTAAGAAGAAGAGTTTATT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGGGTATGGTAAGATACACCAGCAGCTTTAAGAAGAAGAGTTTATT  748

seq1  ATTGGCTTGCAGTTTGAGGGTAAAGTCCATGATGGTGGGAGATCCTGGTG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGCTTGCAGTTTGAGGGTAAAGTCCATGATGGTGGGAGATCCTGGTG  798

seq1  GCAGGAACGTAAAGCACTGGTCACTTTACCTGCAGCCAGGAGGCAGAGGA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAACGTAAAGCACTGGTCACTTTACCTGCAGCCAGGAGGCAGAGGA  848

seq1  TGATGAATGCTTGTTCCTCCATTGTGTGCAGTCTAGGACCCAAGCTCAGT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGAATGCTTGTTCCTCCATTGTGTGCAGTCTAGGACCCAAGCTCAGT  898

seq1  GGATGTTCTACCCACATTGAGGGTGGGTCTTTTCAGCTCAGTCAACCTAA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTTCTACCCACATTGAGGGTGGGTCTTTTCAGCTCAGTCAACCTAA  948

seq1  CTCAAATATTTTTCTCCAAGGCGATTCTAGATCCTGTCAAGCGAAAATCT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAATATTTTTCTCCAAGGCGATTCTAGATCCTGTCAAGCGAAAATCT  998

seq1  GTAGAGGAGTTTTAGTCCAGCATCATGGCTGCTCTGGCAAGGTATCACAT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGGAGTTTTAGTCCAGCATCATGGCTGCTCTGGCAAGGTATCACAT  1048

seq1  CCAAAGATATGATCT  1060
      |||||||||||||||
seq2  CCAAAGATATGATCT  1063

seq1: chr3_65367791_65369030
seq2: B6Ng01-039C18.g_65_1285

seq1  GAATTCAGTGACGATTTACCATTCATCTAGTGTTTATTGAGTCTCTATTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGACGATTTACCATTCATCTAGTGTTTATTGAGTCTCTATTG  50

seq1  TATACCAGGCACAGGTGTAGGTGCTGGGCTACAACAATCAAGAAACATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACCAGGCACAGGTGTAGGTGCTGGGCTACAACAATCAAGAAACATTT  100

seq1  TCCTCCCTGGCCTTCAGAAGCTCCCATTGCTAGCTCTCAAAAAGTCCAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCCTGGCCTTCAGAAGCTCCCATTGCTAGCTCTCAAAAAGTCCAAC  150

seq1  ACAGAACCAAAGCCCTTGGCAAGCACAGACGCTGCACTCAGCCAGTGGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAACCAAAGCCCTTGGCAAGCACAGACGCTGCACTCAGCCAGTGGTA  200

seq1  CTTTCAGTAAATGTGTGCCCACGTTGCTTAGGAGACAGGCCATTTGGGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAGTAAATGTGTGCCCACGTTGCTTAGGAGACAGGCCATTTGGGTG  250

seq1  TGCTATCCAGAGGACAGGGCACAGTTAGGCTTGGGATCAGAGGAACCTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATCCAGAGGACAGGGCACAGTTAGGCTTGGGATCAGAGGAACCTGA  300

seq1  GCCTAGCCTGAGTACTTTTGGACTCTGTGACTAGCATACTTGCTGTGTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAGCCTGAGTACTTTTGGACTCTGTGACTAGCATACTTGCTGTGTGG  350

seq1  CCCTGGACCACCACCTGACCCCCTGCATCTGTTTCATCTCTGACAAGGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGACCACCACCTGACCCCCTGCATCTGTTTCATCTCTGACAAGGCA  400

seq1  GGAATTTGACATTGTGTGCCTATCTCCAAGGGAAGTATGTGAATCAGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTTGACATTGTGTGCCTATCTCCAAGGGAAGTATGTGAATCAGTGT  450

seq1  TTGGAAAGTCTGTGTCAGTTGAAAGGACAAATAAATGCACTGAGATGGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAAGTCTGTGTCAGTTGAAAGGACAAATAAATGCACTGAGATGGGT  500

seq1  GGCCAGCCCCGGTGCAGCTTGCTCACTGCTCGGCCTTTTCAGGCTACCCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGCCCCGGTGCAGCTTGCTCACTGCTCGGCCTTTTCAGGCTACCCG  550

seq1  TGTGTAAACACAGGACCATGTCGCTAACCACCAGCTGTACAAAGGCACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAAACACAGGACCATGTCGCTAACCACCAGCTGTACAAAGGCACAC  600

seq1  ACAGGCTAAGGGGAGCCAGAGAGAAACAGCCAGGCCTTTGGGACAGGAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCTAAGGGGAGCCAGAGAGAAACAGCCAGGCCTTTGGGACAGGAGC  650

seq1  TCTTTTCTCTGGCTCCTTATTTCACTCTTTCAAGGGAAGACTCATCCAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCTCTGGCTCCTTATTTCACTCTTTCAAGGGAAGACTCATCCAGC  700

seq1  AAATGCTGGAAGTACCCAGGACTGATGGGGTTCATTCCTTCAGCAGAAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCTGGAAGTACCCAGGACTGATGGGGTTCATTCCTTCAGCAGAAAC  750

seq1  AAAATGTTTTTTTGTGGCAGGCATTTACTTTCAGAGGTGCTATAAGCAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTTTTTTTGTGGCAGGCATTTACTTTCAGAGGTGCTATAAGCAGC  800

seq1  CAGTGACTGTAGGCACATTTCCAGGTTCTTCAGGTGGAAGTCATATGACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGACTGTAGGCACATTTCCAGGTTCTTCAGGTGGAAGTCATATGACT  850

seq1  CCCACAAAAGAGTTCGACCTGGTACCATTCAGCGCTTCAGGAGAAGCAGC  900
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CCCACAAAAGAGTTCGACCTGGTACCATTCAGCGCTTCA-GAGAAGCAGC  899

seq1  AGCACTGGGTTTGAGTTATATAGGTCTCTGCCAACAGCTGAGAGAGAGGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTGGGTTTGAGTTATATAGGTCTCTGCCAACAGCTGAGAGAGAGGC  949

seq1  AGAGTATAATTAATTACTAAGTTTTTCTCTCCCATCTGTCTGATGTCTTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTATAATTAATTACTAAGTTTTTCTCTCCCATCTGTCTGATGTCTTT  999

seq1  CTGCATTTGGGAAACTACTAGATATTTTGATATGGTGATTTATAATGAAT  1050
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CTGCATTTGGG-AACTACTAGATATTTTGATATGGTGATTTATAATGAAT  1048

seq1  AAAGCTACTTCAAAACAGACAAGGGAAAGCCATGGT-CTCGTTATACTAA  1099
      |||||||||||||||| ||| ||||||||||||||| |||||||| ||||
seq2  AAAGCTACTTCAAAAC-GAC-AGGGAAAGCCATGGTCCTCGTTAT-CTAA  1095

seq1  TAAAAATACATGGGAAAA-CTCAGCGTAAGGGCAGGACAAACAGAGTCTT  1148
      | |||||||||||||||| ||   ||||   ||| |||||||||||||| 
seq2  TTAAAATACATGGGAAAACCTACCCGTA---GCA-GACAAACAGAGTCTG  1141

seq1  GAAGGCTGTCATAGCAGAGTGTGACAAAAGAAAATTCAGGGATTCTCACT  1198
      ||  |||||| || |||||||||||||    ||||||  |||||||||||
seq2  GA--GCTGTC-TACCAGAGTGTGACAA---GAAATTC--GGATTCTCACT  1183

seq1  ATATCACCTTTTCATACATTGACAGAAAACTATTATTCTTAA  1240
      | || ||| |||||||| | |||||||   || |||||||||
seq2  A-AT-ACC-TTTCATACTTGGACAGAACCATA-TATTCTTAA  1221