BAC Information

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BAC

Clone NameB6Ng01-040B18
Chromosome3 (Build37)
Map Location 53,326,766 - 53,485,851
singlet/doubletdoublet
Overlap geneFrem2, Ppia-ps3_416.1
Upstream geneLOC100039762, LOC100039832, Cog6, Lhfp, LOC100039808, LOC666413, 8030451K01Rik, 2810046L04Rik, Stoml3
Downstream geneLOC621155, Ufm1, EG666444, LOC100039937, Trpc4, Postn, LOC100039951, LOC434807, B020017C02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-040B18.bB6Ng01-040B18.g
ACCDH867176DH867177
length4611,102
definitionDH867176|Mus musculus domesticus DNA, BAC clone: B6Ng01-040B18, 5' end.DH867177|Mus musculus domesticus DNA, BAC clone: B6Ng01-040B18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,485,385 - 53,485,851)(53,326,766 - 53,327,869)
sequence
aaataaatgcataggaagggaaataagacaaacaaaacacagagataaca
aaaacaaggaaaatcaaatagataaaacgtggattaaactgtgaagggga
aaataagagtgcaaagtgcaaataaaaggaattaaaaacccacactgtgc
agaataaccaatcaacaataattatagaaggctgaagaactcatagaatt
tgtgtctcatttttctaccaactaattaaaaggaccttcaatgaaagtgt
catcaaatataggcaagattgctgattcccaactctagatacatttttaa
agatttatttattttatgtatatgggttctccatctgcatatgcactggc
tgctcttccagaggtcctgagttcaattcccagcaaccacatggtggctg
acaaccatttgtaatgtgtgaagacagcaggtgtgtgtgtgtgtgtgtgt
gtgtgtgtgtg
gaattcatcatcttaatgcagtcatgggatccctttaggttctgtgtttc
ggacagcttaatctgctttaaaaaattacaacaagccttcttttcttctt
gaacattcagctctcacttctcctttctgagagctggtgcccagaaaagg
acggcggtgaggatagcgaactcttccccttgctgcccgacaagggccgc
agcagagagccgggaaaccaaccgggcaacgtggaaagtcaaaggaaaaa
atgaactacttctaatgaaatagcctttgtaacacaaacaaataccagtt
tattgacagatgtcttatttaatattcaaagcacagccagtttcttctgc
ctatccagtctctaccaattgcagttaccaaggctgaaacttgaatagga
aagccaactgcctctctgtctccattaaagtttctcacagacctagaaaa
aaactgagcagaaaatcgctggcaaatggatccactgaaaggaggtttct
gtgtcactgacccggagcacggaaaaagactgttattccgtgccttttag
gaaggaaagctcttattaaaatatccccagtccagttctcttgtccatgt
attcaggggagctatctttctctgaatgtctgtatggtggcagttttcca
tagggtaggagaccggtaaacgatgaccaagcattaaggacataattact
catatgggactcgtatgaaatgaaggctttccaagctatccgggaaacct
gttgagacctgtgtggatataaagatgtggtcctgtgggcggtggctgcc
cagggacaatgaggcttaccaggatgggacagcacaaacaagccatggaa
ctgagcctctgttttgagttcacagccaggcgtccctcctcaccaatgcg
catgctggtgggtaaagagagcctacagagagaagcccaaggagataaat
tgtagttggccagacaccctcattccatagaccttttttcttctgaccta
tatggctattctaaataataataatataatataataataataataatata
atagcctttaatcccacccacttgggagggcaaagtaggtgggatctctg
ag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_53485385_53485851
seq2: B6Ng01-040B18.b_45_511 (reverse)

seq1  CACACACACACACACACACACACACACACACCTGCTGTCTTCACACATTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACCTGCTGTCTTCACACATTA  50

seq1  CAAATGGTTGTCAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGACCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGGTTGTCAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGACCT  100

seq1  CTGGAAGAGCAGCCAGTGCATATGCAGATGGAGAACCCATATACATAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAGAGCAGCCAGTGCATATGCAGATGGAGAACCCATATACATAAAA  150

seq1  TAAATAAATCTTTAAAAATGTATCTAGAGTTGGGAATCAGCAATCTTGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAATCTTTAAAAATGTATCTAGAGTTGGGAATCAGCAATCTTGCC  200

seq1  TATATTTGATGACACTTTCATTGAAGGTCCTTTTAATTAGTTGGTAGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTGATGACACTTTCATTGAAGGTCCTTTTAATTAGTTGGTAGAAA  250

seq1  AATGAGACACAAATTCTATGAGTTCTTCAGCCTTCTATAATTATTGTTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGACACAAATTCTATGAGTTCTTCAGCCTTCTATAATTATTGTTGA  300

seq1  TTGGTTATTCTGCACAGTGTGGGTTTTTAATTCCTTTTATTTGCACTTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTATTCTGCACAGTGTGGGTTTTTAATTCCTTTTATTTGCACTTTG  350

seq1  CACTCTTATTTTCCCCTTCACAGTTTAATCCACGTTTTATCTATTTGATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTTATTTTCCCCTTCACAGTTTAATCCACGTTTTATCTATTTGATT  400

seq1  TTCCTTGTTTTTGTTATCTCTGTGTTTTGTTTGTCTTATTTCCCTTCCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTGTTTTTGTTATCTCTGTGTTTTGTTTGTCTTATTTCCCTTCCTA  450

seq1  TGCATTTATTTGAATTC  467
      |||||||||||||||||
seq2  TGCATTTATTTGAATTC  467

seq1: chr3_53326766_53327869
seq2: B6Ng01-040B18.g_68_1169

seq1  GAATTCATCATCTTAATGCAGTCATGGGATCCCTTTAGGTTCTGTGTTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCATCTTAATGCAGTCATGGGATCCCTTTAGGTTCTGTGTTTC  50

seq1  GGACAGCTTAATCTGCTTTAAAAAATTACAACAAGCCTTCTTTTCTTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGCTTAATCTGCTTTAAAAAATTACAACAAGCCTTCTTTTCTTCTT  100

seq1  GAACATTCAGCTCTCACTTCTCCTTTCTGAGAGCTGGTGCCCAGAAAAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATTCAGCTCTCACTTCTCCTTTCTGAGAGCTGGTGCCCAGAAAAGG  150

seq1  ACGGCGGTGAGGATAGCGAACTCTTCCCCTTGCTGCCCGACAAGGGCCGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGCGGTGAGGATAGCGAACTCTTCCCCTTGCTGCCCGACAAGGGCCGC  200

seq1  AGCAGAGAGCCGGGAAACCAACCGGGCAACGTGGAAAGTCAAAGGAAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAGAGCCGGGAAACCAACCGGGCAACGTGGAAAGTCAAAGGAAAAA  250

seq1  ATGAACTACTTCTAATGAAATAGCCTTTGTAACACAAACAAATACCAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACTACTTCTAATGAAATAGCCTTTGTAACACAAACAAATACCAGTT  300

seq1  TATTGACAGATGTCTTATTTAATATTCAAAGCACAGCCAGTTTCTTCTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGACAGATGTCTTATTTAATATTCAAAGCACAGCCAGTTTCTTCTGC  350

seq1  CTATCCAGTCTCTACCAATTGCAGTTACCAAGGCTGAAACTTGAATAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCCAGTCTCTACCAATTGCAGTTACCAAGGCTGAAACTTGAATAGGA  400

seq1  AAGCCAACTGCCTCTCTGTCTCCATTAAAGTTTCTCACAGACCTAGAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAACTGCCTCTCTGTCTCCATTAAAGTTTCTCACAGACCTAGAAAA  450

seq1  AAACTGAGCAGAAAATCGCTGGCAAATGGATCCACTGAAAGGAGGTTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGAGCAGAAAATCGCTGGCAAATGGATCCACTGAAAGGAGGTTTCT  500

seq1  GTGTCACTGACCCGGAGCACGGAAAAAGACTGTTATTCCGTGCCTTTTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCACTGACCCGGAGCACGGAAAAAGACTGTTATTCCGTGCCTTTTAG  550

seq1  GAAGGAAAGCTCTTATTAAAATATCCCCAGTCCAGTTCTCTTGTCCATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAAAGCTCTTATTAAAATATCCCCAGTCCAGTTCTCTTGTCCATGT  600

seq1  ATTCAGGGGAGCTATCTTTCTCTGAATGTCTGTATGGTGGCAGTTTTCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGGGGAGCTATCTTTCTCTGAATGTCTGTATGGTGGCAGTTTTCCA  650

seq1  TAGGGTAGGAGACCGGTAAACGATGACCAAGCATTAAGGACATAATTACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGTAGGAGACCGGTAAACGATGACCAAGCATTAAGGACATAATTACT  700

seq1  CATATGGGACTCGTATGAAATGAAGGCTTTCCAAGCTATCCGGGAAACCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGGGACTCGTATGAAATGAAGGCTTTCCAAGCTATCCGGGAAACCT  750

seq1  GTTGAGACCTGTGTGGATATAAAGATGTGGTCCTGTGGGCGGTGGCTGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAGACCTGTGTGGATATAAAGATGTGGTCCTGTGGGCGGTGGCTGCC  800

seq1  CAGGGACAATGAGGCTTACCAGGATGGGACAGCACAAACAAGCCATGGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGACAATGAGGCTTACCAGGATGGGACAGCACAAACAAGCCATGGAA  850

seq1  CTGAGCCTCTGTTTTGAAGTTCACAGCCAGGCGTCCCTCCTCACCAATGC  900
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CTGAGCCTCTGTTTTG-AGTTCACAGCCAGGCGTCCCTCCTCACCAATGC  899

seq1  GCATGCTGGTTGGGTAAAGAGAGCCTACAGAGAGAAGCCCAGGAGGATAA  950
      ||||||||| ||||||||||||||||||||||||||||||| |  |||||
seq2  GCATGCTGG-TGGGTAAAGAGAGCCTACAGAGAGAAGCCCAAGGAGATAA  948

seq1  AATGTAGGTGGCCAGACACCCTCA-TCCATAGACCTTTTTTCTTCTGACC  999
      | ||||| |||||||||||||||| |||||||||||||||||||||||||
seq2  ATTGTAGTTGGCCAGACACCCTCATTCCATAGACCTTTTTTCTTCTGACC  998

seq1  TATATGGCTATTCTAAATAATAATAATAATAATAATAATAATAATAATAA  1049
      ||||||||||||||||||||||||||| ||||| ||||||||||||||||
seq2  TATATGGCTATTCTAAATAATAATAAT-ATAAT-ATAATAATAATAATAA  1046

seq1  TAATAATAGCCTTTAATCCCA-GCACTTGGGAGGCAGAGGCAGGT-GGAT  1097
      | |||||||||||||||||||  |||||||||||   | | |||| ||||
seq2  T-ATAATAGCCTTTAATCCCACCCACTTGGGAGGGCAAAGTAGGTGGGAT  1095

seq1  CTCTGAG  1104
      |||||||
seq2  CTCTGAG  1102