BAC Information

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BAC

Clone NameB6Ng01-040D03
Chromosome7 (Build37)3 (Build37)
Map Location 63,755,248 - 63,756,34741,059,528 - 41,059,737
singlet/doubletsingletsinglet
Overlap genep
Upstream geneSiglech, Tubgcp5, Cyfip1, Nipa2, Nipa1, LOC672959, Herc2
Downstream geneLOC100040839, Gabrg3, Gabra5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-040D03.bB6Ng01-040D03.g
ACCDH867238DH867239
length1,107979
definitionDH867238|Mus musculus domesticus DNA, BAC clone: B6Ng01-040D03, 5' end.DH867239|Mus musculus domesticus DNA, BAC clone: B6Ng01-040D03, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(63,755,248 - 63,756,347)(41,059,528 - 41,059,737)
sequence
gaattccacactgggcagagcttaagtataggagacctcaaagcccaccc
ttactgtgatgaacttcgtctaccaaggccacacctcctaatggtgccac
tccctgtgggctaagcattcaaacatatgagtctgtgggaggccaaacct
cttcaaaccactacatctggtaatagaagagtcagggcaggctttgacaa
gctcttgtgtactgagagcctggaaggctgagcacatactgagagacaag
agaagatctcagtgctccttattgctttgtgtggaaaactctgcacatgt
caagaattaaagatggaggagctatgaatgcctgagctgtaactgcaccc
ctgaaccccacacatattggtccacatggaggttgaggaagtcctactgg
gcaaagtgtttcagaataagcactaacacaaccctggcagactaacaagc
gacactaaaccctaaaggccagccttaaaataatattaggggagctcaga
gaaaacaagcagagacttcagtggtgaaggactataggagaggtggagga
ctggcagaatgtactttgctttgtctcctgagagcttctggttcttcccc
ctctgacctcctccctatctcattcatatggctcagatttttttgttgag
atgtgcagagtagaaactaaagcaagtattcatttctgcctggaaatgaa
aacacattttctctccctcccaggccttctctgcagggcttgattcagtc
ttggcttgagattggttgttgctatggttatttgctgtgctctataatct
tgagatttcatgtagtattactctgtgttttagttaatgtgatttgaatt
tcaaaaatgttcccataggctcatgcgttagagtacatggtttatacttt
gatgatactacttttttataattttcatttttcattagttctttgagaat
ttttgtataatgtggtttgattatatcacccccaccaactccttccagat
acatttcctgcccctattcaggcagcttttatatttctatttattattta
cccatcaaagtacatattgtgctgtatcaagggatgtgtgggttttccac
gggaagt
gaattctttgtttagctctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttcagttctttatatatattggatattaatccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggcggtct
ttttgtcttattgacagtgtcttttgccttgcagaagctttgaaacttta
tgaggtcccattattaagacatacatctataatattggcctataggtagg
tctcttggacatcttgtccatttatatttgatgttagggcccagtacgct
gtggattgtgccaaccctaggcatgttgactggtattatatagcttgctt
atagcaagcagccgatcaagtcttgagagataaactagcaaattgcactc
ctccgtggcttcttcttcatttcctgtcctgatttcccttcatgatggtc
tgtgattagatggtgtaagcaaactaaacttgttcctttgcaagttcttt
ttggtcactgtgttttatcacagtgatagaaacctaagacagtgaggatg
gtatggcagtgggactggcctatgtccatgatgacaagatcatgaagcaa
gtacttgttatatggaactgatcactgaaataaagacagctaaactagaa
ccccagagtcagtttttaaccttcaaagtcttcacttagttatcattgtc
agccaggtctcactgcttaaaaatgttagatttattgtatattatatact
tacatatgttatataatatacatttttattctcccaaacagtgccaccag
ctgaagacaaggactgaaatatgtaagtcaatagatgaccacatagttta
atttattagacatccctgacaccacataccaaaataaatcagtttgaatg
cattaatgataaactcagagtcaccaataaggtattagtgtcacgctaag
gaaaaaaatattaacctaaagccctcccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_63755248_63756347
seq2: B6Ng01-040D03.b_46_1152

seq1  GAATTCCACACTGGGCAGAGCTTAAGTATAGGAGACCTCAAAGCCCACCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACACTGGGCAGAGCTTAAGTATAGGAGACCTCAAAGCCCACCC  50

seq1  TTACTGTGATGAACTTCGTCTACCAAGGCCACACCTCCTAATGGTGCCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGTGATGAACTTCGTCTACCAAGGCCACACCTCCTAATGGTGCCAC  100

seq1  TCCCTGTGGGCTAAGCATTCAAACATATGAGTCTGTGGGAGGCCAAACCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGTGGGCTAAGCATTCAAACATATGAGTCTGTGGGAGGCCAAACCT  150

seq1  CTTCAAACCACTACATCTGGTAATAGAAGAGTCAGGGCAGGCTTTGACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAACCACTACATCTGGTAATAGAAGAGTCAGGGCAGGCTTTGACAA  200

seq1  GCTCTTGTGTACTGAGAGCCTGGAAGGCTGAGCACATACTGAGAGACAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTGTGTACTGAGAGCCTGGAAGGCTGAGCACATACTGAGAGACAAG  250

seq1  AGAAGATCTCAGTGCTCCTTATTGCTTTGTGTGGAAAACTCTGCACATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGATCTCAGTGCTCCTTATTGCTTTGTGTGGAAAACTCTGCACATGT  300

seq1  CAAGAATTAAAGATGGAGGAGCTATGAATGCCTGAGCTGTAACTGCACCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAATTAAAGATGGAGGAGCTATGAATGCCTGAGCTGTAACTGCACCC  350

seq1  CTGAACCCCACACATATTGGTCCACATGGAGGTTGAGGAAGTCCTACTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACCCCACACATATTGGTCCACATGGAGGTTGAGGAAGTCCTACTGG  400

seq1  GCAAAGTGTTTCAGAATAAGCACTAACACAACCCTGGCAGACTAACAAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGTGTTTCAGAATAAGCACTAACACAACCCTGGCAGACTAACAAGC  450

seq1  GACACTAAACCCTAAAGGCCAGCCTTAAAATAATATTAGGGGAGCTCAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTAAACCCTAAAGGCCAGCCTTAAAATAATATTAGGGGAGCTCAGA  500

seq1  GAAAACAAGCAGAGACTTCAGTGGTGAAGGACTATAGGAGAGGTGGAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACAAGCAGAGACTTCAGTGGTGAAGGACTATAGGAGAGGTGGAGGA  550

seq1  CTGGCAGAATGTACTTTGCTTTGTCTCCTGAGAGCTTCTGGTTCTTCCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCAGAATGTACTTTGCTTTGTCTCCTGAGAGCTTCTGGTTCTTCCCC  600

seq1  CTCTGACCTCCTCCCTATCTCATTCATATGGCTCAGATTTTTTTGTTGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGACCTCCTCCCTATCTCATTCATATGGCTCAGATTTTTTTGTTGAG  650

seq1  ATGTGCAGAGTAGAAACTAAAGCAAGTATTCATTTCTGCCTGGAAATGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCAGAGTAGAAACTAAAGCAAGTATTCATTTCTGCCTGGAAATGAA  700

seq1  AACACA-TTTCTCTCCCTCCCAGGCCTTCTCTGCAGGGCTTGATTCAGTC  749
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AACACATTTTCTCTCCCTCCCAGGCCTTCTCTGCAGGGCTTGATTCAGTC  750

seq1  TTGGCTTGAGATTGGTTGTTGCTATGGTTATTTGCTGTGCTCTATAATCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTTGAGATTGGTTGTTGCTATGGTTATTTGCTGTGCTCTATAATCT  800

seq1  TGAGA-TTCATGTAGTATTACTCTGTGTTTAAGTTAATGTGATTTGAATT  848
      ||||| |||||||||||||||||||||||| |||||||||||||||||||
seq2  TGAGATTTCATGTAGTATTACTCTGTGTTTTAGTTAATGTGATTTGAATT  850

seq1  --CAAAATGTTCCCATAGGCTCATGCGTTAGAGTACATGGTTTATAC-TT  895
         |||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TCAAAAATGTTCCCATAGGCTCATGCGTTAGAGTACATGGTTTATACTTT  900

seq1  GATGATACTACTTTTTTATAATTTTCATTTTTCATTAGTTCTTTGAGAA-  944
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GATGATACTACTTTTTTATAATTTTCATTTTTCATTAGTTCTTTGAGAAT  950

seq1  TTTTGTATAATGTGGTTTGATTATATTCACCCCCACCAACTCCTCCCAGA  994
      ||||||||||||||||||||||||| |||||||||||||||||| |||||
seq2  TTTTGTATAATGTGGTTTGATTATA-TCACCCCCACCAACTCCTTCCAGA  999

seq1  TACATTTTCTGCCCCTATCCAGGCAGCTTTATATTTTCTTATTTATTATT  1044
      ||||||| |||||||||| ||||||||||| ||| ||  |||||||||||
seq2  TACATTTCCTGCCCCTATTCAGGCAGCTTT-TATATTTCTATTTATTATT  1048

seq1  TACACATC-AAGTACTATTTGTGCTGTACTCATGGATGTGT-GGCTTTCC  1092
      ||| |||| ||||||   ||||||||||   | |||||||| || |||||
seq2  TACCCATCAAAGTACATATTGTGCTGTATCAAGGGATGTGTGGGTTTTCC  1098

seq1  AC-TGAAGT  1100
      ||  |||||
seq2  ACGGGAAGT  1107

seq1: chr3_41059528_41059737
seq2: B6Ng01-040D03.g_69_279 (reverse)

seq1  AATGGGACCTCATGAAACTGCAAAGCTTCTGCAAGGCAAAAGACACCGTC  50
      ||||||||||||| ||  | |||||||||||||||||||||||||| |||
seq2  AATGGGACCTCATAAAGTTTCAAAGCTTCTGCAAGGCAAAAGACACTGTC  50

seq1  AATAAGACAAAAAG-GCACCAACAGATTGGGAAAGGATCTTTACCTATCC  99
      ||||||||||||||  | ||||||||||||||||||||||||||||||||
seq2  AATAAGACAAAAAGACCGCCAACAGATTGGGAAAGGATCTTTACCTATCC  100

seq1  TAAATCAGATAGGGGACTAATATCCAATATATATCAAGAACTCAAGAAGG  149
      |||||||||||||||| ||||||||||||||||| ||||||| |||||||
seq2  TAAATCAGATAGGGGATTAATATCCAATATATATAAAGAACTGAAGAAGG  150

seq1  TGGATTCCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAGCTA  199
      |||| | |||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTTCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAGCTA  200

seq1  AACAAAGAATT  210
      |||||||||||
seq2  AACAAAGAATT  211