BAC Information

Click to search

BAC

Clone NameB6Ng01-040F16
Chromosome3 (Build37)
Map Location 91,970,052 - 91,971,293
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042463, Pglyrp3, EG619750, Lor, A030004J04Rik
Downstream geneSprr2a, LOC100042999, LOC545543, LOC100043005, LOC545545, LOC100042514, LOC619984, Sprr2b, Sprr2c, Sprr2d, Sprr2e, Sprr2f, Sprr2g, Sprr2h, Sprr2i, Sprr2j, LOC100043022, Sprr2k, Sprr1b, Sprr3, LOC100042575, Sprr1a, Sprr4, LOC100042581, Ivl, Smcp, Lce1a1, Lce1b, LOC620325, Lce1a2, Lce1c, Lce1d, LOC100043062, Lce1e, Lce1f, LOC668264, Lce1g, Lce1h, Lce1i, LOC545547, LOC631101, Kprp, Lce1l, 2310050C09Rik, Lce3a, Lce3b, Lce3c, LOC630994, 2310001H18Rik, Lce3f, Crct1, Lce1m, EG229571, Crnn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-040F16.bB6Ng01-040F16.g
ACCDH867351DH867352
length1,2471,261
definitionDH867351|Mus musculus domesticus DNA, BAC clone: B6Ng01-040F16, 5' end.DH867352|Mus musculus domesticus DNA, BAC clone: B6Ng01-040F16, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctctgtttatttgcctgtatgagtatatgtgcatcatgcccatgc
agatgcctacagaggccagaaaagggcatcagatcccctgcaattgaagg
agcaggcacttatgaactgccccttcttagtactagaaactgaatccaaa
tctgtaagatcaggaagcactataaactattaaactgtctctccagtccc
caaaatgaggttttataggattagattacttgcttacacacaaaaaacaa
gaaagaccattaaaacaacacagaacaagccaggcgtggtggcacatgcc
tttaataccagcacttgggaggcagaggcaggtgaatttctgaattcgag
gccagtatggtctacagagtgagttccaggacagccagggctatacagag
aaaacctgtctcagaaggagaaaaaaacaaaaaacaaaaaaaaacaccac
agaacaattctaaggctagctttgggaatcttgggtctgtagtgttaagt
gataaagatgctgtgcagctggatctatattattcaatatccagaccact
gcttttccatcttatgctctttcaataccaggaaattttatttcatctgg
atcagagatcaaataccacattttcaaagactacaatgaacagccttcaa
ataatgacactcacctaagaatatgaatgaagagatccactatgtaaagc
acttctgggacttcctgctttatggtgtccagctctgcctagatcctttg
tcagagtcctttggacaatgaggtagaagaggcaatttttatactatcaa
ttacaaaaaataaatatgtggaagctagcctatagagagaaaacaacact
agaaacactagaaaaatagcaagactctaacagaaaatttgaaatagaga
aaaataaaaatagtcataggaccagatgtactttttaaacagatctctac
tgtaaaatatcttctgagatgcaatttttcacttctccttggtgtttgca
gaaatagaaagttcaagcatggtagacaagcaacagtttcattgacaaaa
ttacttagaatattttctttgaataagaattgaatacaccttccaagaga
cttcttgctatataaacttctgttctgtaaatacaaattaagtatactcc
ctctcttctgggtatttaaccaatggctctttgcatacagatcaaagaat
tcctgccctctggaataaacgccaattggctttcttggtaaccgata
gaattccacatgaaaccagagacactgaaacttatagaggagaaagtggg
gaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaacag
caatggcttgttctgtaagatcgagaatctacaaatggaacctcataaaa
ctgcaaagcttctgtacggtaaaagacactggcaataagacaaaaaggcc
atcaagagattaggaaaggatctttattaatcctaaatcagataggggca
taatatccaatatatataaagaactcaagaagctggacttcagaaaatca
aataaccttattaaaaatggggtacagagctaagaaaaagaattctcaac
tgaagaataccgaatggctgagaagtacctgataaaatgttcaaaatcct
taatcatcagggaaatgcaaatcaaaacaaccctgagattacacctcaca
cctgtcagaatggctaagatcaaaaatgcagatggcagcagatgctggcg
aggatatggagaaagaggaacactcttccaatgttgttgggattgcaagc
ttgtacaaccactctgaaaatcagtctggtggttcctcagaaaattggac
atagtattaccagaagaaccagcaatacctctcttgggcatatacccaga
agatgttccaacttgtaataagaacacatgctccactatgttcatagcag
ctttatttataataggcagaagctggaaagaacccagatgtccctcaaca
gaggaatggatacagaaattgtggtacatttacacaatggagtactactc
ggcaatttaaaacaatgaatttatgaaattcttatgcaaatggatggatt
tgggagttatcatcctgagtgaggtaaccgaatcacaatagaatacacat
gatatgtactcactgataatgaatattaacctagaaacttagattaccca
agatacatttgcaaaacacatgaaactcagaaggaagaccacgtgtggaa
acttcatccttctagatggaggaacaaataccatgaagggagttaagaga
ataaacttccgacctgagaataaagaaagaacatccgaagattgccctca
cctgggataccatcatattaaccacaaacctagaatatgccttgaaatgc
caaaagaatttgcgacagatatctgataaccatacctaaagcatgcaggt
ccggtcaaatcaaatgataagtctagttcctattgagaagaagacaggcc
tcctgaataag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_91970052_91971293
seq2: B6Ng01-040F16.b_46_1292 (reverse)

seq1  TATCGGTATAAC-AGAAAGCCAAATGTGGCTGTTTAATTCAGAGGGCA-G  48
      ||||||| || | ||||||||||   |||| ||||| | ||||||||| |
seq2  TATCGGT-TACCAAGAAAGCCAA--TTGGC-GTTTATTCCAGAGGGCAGG  46

seq1  AATCTTTTGAT-TGTATGC-AAGAGCTATTTG-TAAATAACAGGA--AGA  93
      |||  |||||| ||||||| |||||| ||| | |||||| |  ||  |||
seq2  AATTCTTTGATCTGTATGCAAAGAGCCATTGGTTAAATACCCAGAAGAGA  96

seq1  AGGAGTATACTTATATTGTATTT-CAGAACAG-AGTTT-TATAGC-AGAA  139
       ||||||||||||  |||||||| |||||||| ||||| |||||| ||||
seq2  GGGAGTATACTTAATTTGTATTTACAGAACAGAAGTTTATATAGCAAGAA  146

seq1  GTCTC-TGGAAGGTGTGATTC-ATTC-TAATCAAAGAAAATATTTCTAAG  186
      ||||| |||||||||| |||| |||| || |||||||||||| |||||||
seq2  GTCTCTTGGAAGGTGT-ATTCAATTCTTATTCAAAGAAAATA-TTCTAAG  194

seq1  TAATTTTGTCAATGAAACTGTTGCTTGTCTACCATGCTTGAAACTTTCTA  236
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TAATTTTGTCAATGAAACTGTTGCTTGTCTACCATGCTTG-AACTTTCTA  243

seq1  TTTCTGGCAGACACCAAGGAGAAGTGGAAAAATTGCATCTCAGAAGATAT  286
      ||||| ||| ||||||||||||||| ||||||||||||||||||||||||
seq2  TTTCT-GCAAACACCAAGGAGAAGT-GAAAAATTGCATCTCAGAAGATAT  291

seq1  TTTACAGTAGAGATCTGTTTAAAAAGTACATCTGGTCCTATGACTATTTT  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAGTAGAGATCTGTTTAAAAAGTACATCTGGTCCTATGACTATTTT  341

seq1  TATTTTTCTCTATTTCAAATTTTCTGTTAGAGTCTTGCTATTTTTCTAGT  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTCTCTATTTCAAATTTTCTGTTAGAGTCTTGCTATTTTTCTAGT  391

seq1  GTTTCTAGTGTTGTTTTCTCTCTATAGGCTAGCTTCCACATATTTATTTT  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTAGTGTTGTTTTCTCTCTATAGGCTAGCTTCCACATATTTATTTT  441

seq1  TTGTAATTGATAGTATAAAAATTGCCTCTTCTACCTCATTGTCCAAAGGA  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAATTGATAGTATAAAAATTGCCTCTTCTACCTCATTGTCCAAAGGA  491

seq1  CTCTGACAAAGGATCTAGGCAGAGCTGGACACCATAAAGCAGGAAGTCCC  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGACAAAGGATCTAGGCAGAGCTGGACACCATAAAGCAGGAAGTCCC  541

seq1  AGAAGTGCTTTACATAGTGGATCTCTTCATTCATATTCTTAGGTGAGTGT  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTGCTTTACATAGTGGATCTCTTCATTCATATTCTTAGGTGAGTGT  591

seq1  CATTATTTGAAGGCTGTTCATTGTAGTCTTTGAAAATGTGGTATTTGATC  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATTTGAAGGCTGTTCATTGTAGTCTTTGAAAATGTGGTATTTGATC  641

seq1  TCTGATCCAGATGAAATAAAATTTCCTGGTATTGAAAGAGCATAAGATGG  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATCCAGATGAAATAAAATTTCCTGGTATTGAAAGAGCATAAGATGG  691

seq1  AAAAGCAGTGGTCTGGATATTGAATAATATAGATCCAGCTGCACAGCATC  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCAGTGGTCTGGATATTGAATAATATAGATCCAGCTGCACAGCATC  741

seq1  TTTATCACTTAACACTACAGACCCAAGATTCCCAAAGCTAGCCTTAGAAT  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCACTTAACACTACAGACCCAAGATTCCCAAAGCTAGCCTTAGAAT  791

seq1  TGTTCTGTGGTGTTTTTTTTTGTTTTTTGTTTTTTTCTCCTTCTGAGACA  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTGTGGTGTTTTTTTTTGTTTTTTGTTTTTTTCTCCTTCTGAGACA  841

seq1  GGTTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAT  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAT  891

seq1  ACTGGCCTCGAATTCAGAAATTCACCTGCCTCTGCCTCCCAAGTGCTGGT  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCCTCGAATTCAGAAATTCACCTGCCTCTGCCTCCCAAGTGCTGGT  941

seq1  ATTAAAGGCATGTGCCACCACGCCTGGCTTGTTCTGTGTTGTTTTAATGG  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAGGCATGTGCCACCACGCCTGGCTTGTTCTGTGTTGTTTTAATGG  991

seq1  TCTTTCTTGTTTTTTGTGTGTAAGCAAGTAATCTAATCCTATAAAACCTC  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTGTTTTTTGTGTGTAAGCAAGTAATCTAATCCTATAAAACCTC  1041

seq1  ATTTTGGGGACTGGAGAGACAGTTTAATAGTTTATAGTGCTTCCTGATCT  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGGGGACTGGAGAGACAGTTTAATAGTTTATAGTGCTTCCTGATCT  1091

seq1  TACAGATTTGGATTCAGTTTCTAGTACTAAGAAGGGGCAGTTCATAAGTG  1136
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGATTTGGATTCAGTTTCTAGTACTAAGAAGGGGCAGTTCATAAGTG  1141

seq1  CCTGCTCCTTCAATTGCAGGGGATCTGATGCCCTTTTCTGGCCTCTGTAG  1186
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTCCTTCAATTGCAGGGGATCTGATGCCCTTTTCTGGCCTCTGTAG  1191

seq1  GCATCTGCATGGGCATGATGCACATATACTCATACAGGCAAATAAACAGA  1236
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTGCATGGGCATGATGCACATATACTCATACAGGCAAATAAACAGA  1241

seq1  GAATTC  1242
      ||||||
seq2  GAATTC  1247