BAC Information

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BAC

Clone NameB6Ng01-040N17
Chromosome3 (Build37)
Map Location 139,515,924 - 139,633,655
singlet/doubletdoublet
Overlap genenone
Upstream geneTspan5, Rap1gds1, EG229879, B930007M17Rik, LOC100039840
Downstream geneLOC229883, LOC621343, 4930590L14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-040N17.bB6Ng01-040N17.g
ACCDH867695DH867696
length1,021798
definitionDH867695|Mus musculus domesticus DNA, BAC clone: B6Ng01-040N17, 5' end.DH867696|Mus musculus domesticus DNA, BAC clone: B6Ng01-040N17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(139,515,924 - 139,516,916)(139,632,865 - 139,633,655)
sequence
gaattcacccagtaggctaggctggatgaccagggaattctagggatacc
cctgtctctcctgtccttggattacagatggtccctaccatgttctcggt
tgtacatgtgagttctgggaatctgactcacatcctcatgcttgaaaggc
caacatttaataaataaattgtatccatagccccaagtttttcttgctga
cattagttttagtttcacagcaaaactgaggggaaactagtaagctattt
ccatgtggtcagtttgtgcacgcgtttacaaccttccctcattctcatga
tcatgtagcacagtgatcactttggtagagctacctctctgcttgtttga
catgacatcatggcacataatcccatagtttctccctattctaccagatt
agacatgtgaaatgacatgagtccatcattagagagtcaacccgggagac
cacatatctctcatggctttcctagcctgcttagcaagagtatcatggaa
tgatgcagtctgtagcctttttacatgtattatgcatttttcctctgctt
gtttttgatagatatttcctgataatggtgactagcagttcactctctgt
ctggatatgttccagttcatttactcacccacccactaaagtacactctg
gttgctctggcatcttcgtggctatgaactaaatttctacatggacctca
aagcaggtttgtgtatgaagatgtttgcaactcttttggcggaatgccag
gatgtgtgattgctgtatcaccgaggaggagtatgttgatttaataggaa
aacttcaaaccctctcgaagtagctgcatcatttcattccctcctgtgtt
ggatgagttcttgggaccgctcctcctggagggtatttggagtggcactg
agtgctctggtcattttcacaggtgtatcactctagcttctgcctgctgg
attaatttatgaatgaatgatgaatggtgtggtgcatgttcccacatgat
cattcgttgttttagttgttg
gaattcttttcatgtaattctaattgagcattcaaattgaaagtggatta
gacttcaaatataaatctgaatcgctgttaattttatgaaggttactatc
aaagggaaacataagtatcacaggtgttcatcttccgaaccaaacaaaaa
atgacagcgctggtctctttagagattcacttttcatgtacctggaatgc
ttcattacgcaacattattcattataaatgtctcattgttctgtctagca
accagatgtgctgatgacaactctttcactcaaggtaaattatgtgataa
tgggaagaaaggaaatcatttcatcttgcattcaataggatgtaatcttc
aggttggtgtgtgcaaaaatagccaacagtgacttgagactgtttaagac
gagttctttttttttttctggaaactgctggtttttgtttgcttgaaaag
aaaaagagaaagaaagaaatgaatttgtaattacaacataataggtttga
gaaaatgcacatggctaattatatgcacactagacagggttcagctggcc
tggaggaagaattttgtttactttgagaaggttcattaagcctgcttttt
cagtgcagcacacaaacattggagaaaataacgtaacagtttattgtgat
aaggtgtgtgagtagaataatcaggtgaacagggtgcaacatttgttcat
agctgtgatattgtgtgtgcgtgtgtgtatgtatgtatatatatatatat
atatatatatacatatatatacatacacacacatatatttttatgtat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_139515924_139516916
seq2: B6Ng01-040N17.b_44_1035

seq1  GAATTCACCCAGTAGGCTAGGCTGGATGACCAGGGAATTCTAGGGATACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCCAGTAGGCTAGGCTGGATGACCAGGGAATTCTAGGGATACC  50

seq1  CCTGTCTCTCCTGTCCTTGGATTACAGATGGTCCCTACCATGTTCTCGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCTCTCCTGTCCTTGGATTACAGATGGTCCCTACCATGTTCTCGGT  100

seq1  TGTACATGTGAGTTCTGGGAATCTGACTCACATCCTCATGCTTGAAAGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACATGTGAGTTCTGGGAATCTGACTCACATCCTCATGCTTGAAAGGC  150

seq1  CAACATTTAATAAATAAATTGTATCCATAGCCCCAAGTTTTTCTTGCTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATTTAATAAATAAATTGTATCCATAGCCCCAAGTTTTTCTTGCTGA  200

seq1  CATTAGTTTTAGTTTCACAGCAAAACTGAGGGGAAACTAGTAAGCTATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGTTTTAGTTTCACAGCAAAACTGAGGGGAAACTAGTAAGCTATTT  250

seq1  CCATGTGGTCAGTTTGTGCACGCGTTTACAACCTTCCCTCATTCTCATGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTGGTCAGTTTGTGCACGCGTTTACAACCTTCCCTCATTCTCATGA  300

seq1  TCATGTAGCACAGTGATCACTTTGGTAGAGCTACCTCTCTGCTTGTTTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTAGCACAGTGATCACTTTGGTAGAGCTACCTCTCTGCTTGTTTGA  350

seq1  CATGACATCATGGCACATAATCCCATAGTTTCTCCCTATTCTACCAGATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACATCATGGCACATAATCCCATAGTTTCTCCCTATTCTACCAGATT  400

seq1  AGACATGTGAAATGACATGAGTCCATCATTAGAGAGTCAACCCGGGAGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATGTGAAATGACATGAGTCCATCATTAGAGAGTCAACCCGGGAGAC  450

seq1  CACATATCTCTCATGGCTTTCCTAGCCTGCTTAGCAAGAGTATCATGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATATCTCTCATGGCTTTCCTAGCCTGCTTAGCAAGAGTATCATGGAA  500

seq1  TGATGCAGTCTGTAGCCTTTTTACATGTATTATGCATTTTTCCTCTGCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCAGTCTGTAGCCTTTTTACATGTATTATGCATTTTTCCTCTGCTT  550

seq1  GTTTTTGATAGATATTTCCTGATAATGGTGACTAGCAGTTCACTCTCTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTGATAGATATTTCCTGATAATGGTGACTAGCAGTTCACTCTCTGT  600

seq1  CTGGATATGTTCCAGTTCATTTACTCACCCACCCACTAAAGTACACTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATATGTTCCAGTTCATTTACTCACCCACCCACTAAAGTACACTCTG  650

seq1  GTTGCTCTGGCATCTTCGTGGCTATGAACTAAATTTCTACATGGACCTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTCTGGCATCTTCGTGGCTATGAACTAAATTTCTACATGGACCTCA  700

seq1  AAGCAGGTTTGTGTATGAAGATGTTTGCAACTCTTTTGGCGGAATGCCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGGTTTGTGTATGAAGATGTTTGCAACTCTTTTGGCGGAATGCCAG  750

seq1  GATGTGTGATTGCTGTATCACCGAGGAGGAGTATGTTGATTTAATAGGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGTGATTGCTGTATCACCGAGGAGGAGTATGTTGATTTAATAGGAA  800

seq1  AACTTCAAACCCTCTCGAAGTAGCTGCATCATTTCATTCCCTCCTGTGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCAAACCCTCTCGAAGTAGCTGCATCATTTCATTCCCTCCTGTGTT  850

seq1  GGATGAGTTCTTGGGACCGCTCCTCCTGGAGGGTATTTGGAGTGGCACTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGAGTTCTTGGGACCGCTCCTCCTGGAGGGTATTTGGAGTGGCACTG  900

seq1  AGTGCTCTGGTCATTTTCACAGGTGTATCACTCTAGCTTCTGCCCTGCTG  950
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AGTGCTCTGGTCATTTTCACAGGTGTATCACTCTAGCTTCTG-CCTGCTG  949

seq1  GATTAATTTATGAATGAATGATGAATGGTGTGGTGCATGTTCC  993
      |||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAATTTATGAATGAATGATGAATGGTGTGGTGCATGTTCC  992

seq1: chr3_139632865_139633655
seq2: B6Ng01-040N17.g_70_867 (reverse)

seq1  ATAC------ATATATATGTATATATATATATATATGTATATATATATAT  44
      ||||      |||||| ||| | ||| |||||||||||||||||||||||
seq2  ATACATAAAAATATATGTGTGTGTATGTATATATATGTATATATATATAT  50

seq1  ATATATATATATACATACATACACACACGCACACACAATATCACAGCTAT  94
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATACATACATACACACACGCACACACAATATCACAGCTAT  100

seq1  GAAC-AATGTTGCACCCTGTTCACCTGATTATTCTACTCACACACCTTAT  143
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAAATGTTGCACCCTGTTCACCTGATTATTCTACTCACACACCTTAT  150

seq1  CACAATAAACTGTTACGTTATTTTCTCCAATGTTTGTGTGCTGCACTGAA  193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATAAACTGTTACGTTATTTTCTCCAATGTTTGTGTGCTGCACTGAA  200

seq1  AAAGCAGGCTTAATGAACCTTCTCAAAGTAAACAAAATTCTTCCTCCAGG  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAGGCTTAATGAACCTTCTCAAAGTAAACAAAATTCTTCCTCCAGG  250

seq1  CCAGCTGAACCCTGTCTAGTGTGCATATAATTAGCCATGTGCATTTTCTC  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTGAACCCTGTCTAGTGTGCATATAATTAGCCATGTGCATTTTCTC  300

seq1  AAACCTATTATGTTGTAATTACAAATTCATTTCTTTCTTTCTCTTTTTCT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTATTATGTTGTAATTACAAATTCATTTCTTTCTTTCTCTTTTTCT  350

seq1  TTTCAAGCAAACAAAAACCAGCAGTTTCCAGAAAAAAAAAAAGAACTCGT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAGCAAACAAAAACCAGCAGTTTCCAGAAAAAAAAAAAGAACTCGT  400

seq1  CTTAAACAGTCTCAAGTCACTGTTGGCTATTTTTGCACACACCAACCTGA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAACAGTCTCAAGTCACTGTTGGCTATTTTTGCACACACCAACCTGA  450

seq1  AGATTACATCCTATTGAATGCAAGATGAAATGATTTCCTTTCTTCCCATT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTACATCCTATTGAATGCAAGATGAAATGATTTCCTTTCTTCCCATT  500

seq1  ATCACATAATTTACCTTGAGTGAAAGAGTTGTCATCAGCACATCTGGTTG  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACATAATTTACCTTGAGTGAAAGAGTTGTCATCAGCACATCTGGTTG  550

seq1  CTAGACAGAACAATGAGACATTTATAATGAATAATGTTGCGTAATGAAGC  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGACAGAACAATGAGACATTTATAATGAATAATGTTGCGTAATGAAGC  600

seq1  ATTCCAGGTACATGAAAAGTGAATCTCTAAAGAGACCAGCGCTGTCATTT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCAGGTACATGAAAAGTGAATCTCTAAAGAGACCAGCGCTGTCATTT  650

seq1  TTTGTTTGGTTCGGAAGATGAACACCTGTGATACTTATGTTTCCCTTTGA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTGGTTCGGAAGATGAACACCTGTGATACTTATGTTTCCCTTTGA  700

seq1  TAGTAACCTTCATAAAATTAACAGCGATTCAGATTTATATTTGAAGTCTA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAACCTTCATAAAATTAACAGCGATTCAGATTTATATTTGAAGTCTA  750

seq1  ATCCACTTTCAATTTGAATGCTCAATTAGAATTACATGAAAAGAATTC  791
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACTTTCAATTTGAATGCTCAATTAGAATTACATGAAAAGAATTC  798