BAC Information

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BAC

Clone NameB6Ng01-042C09
Chromosome3 (Build37)10 (Build37)
Map Location 93,747,396 - 93,748,531104,053,660 - 104,054,228
singlet/doubletsingletsinglet
Overlap geneEG668346
Upstream geneLce3c, LOC630994, 2310001H18Rik, Lce3f, Crct1, Lce1m, EG229571, Crnn, EG229574, EG668300, LOC668304, Flg, LOC100042701, Hrnr, Rptn, EG383891, Tchh, Tchhl1, S100a11, S100a10, EG433623, Tdpoz2, Tdpoz1, LOC668325, LOC545550, EG436563, Tdpoz4, Tdpoz3, EG668341, LOC668344
Downstream geneTdpoz5, EG668353, EG668356, LOC668359, LOC100042761, LOC433624, LOC668367, LOC433625, LOC100043188, EG383977, EG245290, EG668385, EG212727, Them4, Them5, Gm659, Rorc, Lingo4, Tdrkh, Oaz3, Mrpl9, LOC668403, 2310007A19Rik, Tnrc4, Snx27, LOC100043228, EG668409, Tuft1, LOC100042793, BC021767, Selenbp2, LOC100042801, Cgn, Pogz, Psmb4, Selenbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-042C09.bB6Ng01-042C09.g
ACCDH868606DH868607
length1,132991
definitionDH868606|Mus musculus domesticus DNA, BAC clone: B6Ng01-042C09, 5' end.DH868607|Mus musculus domesticus DNA, BAC clone: B6Ng01-042C09, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(93,747,396 - 93,748,531)(104,053,660 - 104,054,228)
sequence
gaattctgaagaagtaggctccaatacccgtgaagaaatgggcttgctct
tatgatgagagcaagcagacaaggagagtttccttcttccatgtgcttat
ataggcttagagcaggtgtggcccagttgaaggtgtgtcttctagtctca
aagctggattaaaggtgtgtgttttcctgcctcaaaactcaggttaaagg
tgtgtgtttctacctggagtctgtatttgaactggatttatttacttcta
cttaagaaaaaaaaattaaaggtatgccatcaagttttgcacggtcctta
agtccaaaggtagtaacacacgaagaatagccatcaccagtttactttgc
ttgctagggtcagtcttccataaataaagtgatcatgtcaatctctgcac
agagattgtttatttacccttgtgcttgtcttacactgatacttgctata
aaaatgatcagggaaggagtgttttccttaacatgtcagaagtctgagtg
ttgacaaactggagggaatggggaagagctcctatatggtgggcaggaag
cagagccccaaaactattaaggtgcctttcttctttccttcgtgttattc
taatcagaaccacaaaccttgtgatgactccacccaatttgggtagtggt
cttgtttctacttcacgtcaggaaatcctcattggaaatcctttttcaga
gccacttaagggtctggtttaggaatatcctaaatgcttctcaattcaat
cactttaattgacaggaatcacctcttactctgcattctcccctgatgag
ttttgtcctttatagacttggactgccatgctttctctgctagtcctgaa
aagggagagattttgctgctttccaagggctgcagcatatattggagata
tcaaagatttgttattactgcccttatgtataatgaagtgtaaaattctg
cctacatctctcatctctccagtgtgtcatgtcttacacctacagtctag
aggaaacagaaacaactgcagttgattcaattatctcagatactcccaga
tctcggaattctggctttaatgctggctcattcactagaaaaaatcaatt
ggtttgattctgaatcttcctggactattgct
gaattcaggtgacagctgatgttggcaaggatgtggagaaataggaacac
tcctccattgctggtgggattgcaagcttgtacaaccactctagaaatca
gtctggcaatttctcagaaaattggacattatactaccagaagatccagc
aatacttctcctgggcatatactcagaagatgttccaactggtaataagc
acacatgctccactatgttcatagcagccttatttataatagccagaagc
tggaaagaacccagatgtccctcaacagaggaatggatacagaaaatgtg
gtacatttacacaatggagtgctattcagccatgaaaacaatgaatttat
gaaattcttggtcaaatggatgtatctggaggatatcatccttagtgagg
tagcccaatcacaaaagaagtcattagatattcactcactgataagtgga
tattagcccagaaaattagaatacccaagatacaatttgcaaaacacaag
aaaatcaagaagaaggaagaccaacatgtggatacttcattcctccttaa
aatgggaaacaaaaacccatgaaaggagttacagagacaaagtttggagc
taagacgaaaggatagactatccagagactaccccacccaggaatccatt
ccataatcagccaccaaacccagacactattgcatatgccagcaagattt
ggctgaagggaccctggtatagctgtcttatatgaggttatgccagtgaa
tggcaaatacagaagtggatgctcacagtcatctataaggtggaacacag
ggcccccaatggagaagctagagaaagcacacaaggagctaaaggggttt
gcaaccctatagatgtaacaacaatatgaacttagcagtaccctcagagt
tcgagtctctacctgcatatgtagcagagatggcctagttggccatcact
gggaagagagtcccttgatatgcaatgttatttgccccagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_93747396_93748531
seq2: B6Ng01-042C09.b_43_1174

seq1  GAATTCTGAAGAAGTAGGCTCCAATACCCGTGAAGAAATGGGCTTGCTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAAGAAGTAGGCTCCAATACCCGTGAAGAAATGGGCTTGCTCT  50

seq1  TATGATGAGAGCAAGCAGACAAGGAGAGTTTCCTTCTTCCATGTGCTTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATGAGAGCAAGCAGACAAGGAGAGTTTCCTTCTTCCATGTGCTTAT  100

seq1  ATAGGCTTAGAGCAGGTGTGGCCCAGTTGAAGGTGTGTCTTCTAGTCTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGCTTAGAGCAGGTGTGGCCCAGTTGAAGGTGTGTCTTCTAGTCTCA  150

seq1  AAGCTGGATTAAAGGTGTGTGTTTTCCTGCCTCAAAACTCAGGTTAAAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGGATTAAAGGTGTGTGTTTTCCTGCCTCAAAACTCAGGTTAAAGG  200

seq1  TGTGTGTTTCTACCTGGAGTCTGTATTTGAACTGGATTTATTTACTTCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTTTCTACCTGGAGTCTGTATTTGAACTGGATTTATTTACTTCTA  250

seq1  CTTAAGAAAAAAAAATTAAAGGTATGCCATCAAGTTTTGCACGGTCCTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGAAAAAAAAATTAAAGGTATGCCATCAAGTTTTGCACGGTCCTTA  300

seq1  AGTCCAAAGGTAGTAACACACGAAGAATAGCCATCACCAGTTTACTTTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCAAAGGTAGTAACACACGAAGAATAGCCATCACCAGTTTACTTTGC  350

seq1  TTGCTAGGGTCAGTCTTCCATAAATAAAGTGATCATGTCAATCTCTGCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTAGGGTCAGTCTTCCATAAATAAAGTGATCATGTCAATCTCTGCAC  400

seq1  AGAGATTGTTTATTTACCCTTGTGCTTGTCTTACACTGATACTTGCTATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATTGTTTATTTACCCTTGTGCTTGTCTTACACTGATACTTGCTATA  450

seq1  AAAATGATCAGGGAAGGAGTGTTTTCCTTAACATGTCAGAAGTCTGAGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGATCAGGGAAGGAGTGTTTTCCTTAACATGTCAGAAGTCTGAGTG  500

seq1  TTGACAAACTGGAGGGAATGGGGAAGAGCTCCTATATGGTGGGCAGGAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACAAACTGGAGGGAATGGGGAAGAGCTCCTATATGGTGGGCAGGAAG  550

seq1  CAGAGCCCCAAAACTATTAAGGTGCCTTTCTTCTTTCCTTCGTGTTATTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCCCCAAAACTATTAAGGTGCCTTTCTTCTTTCCTTCGTGTTATTC  600

seq1  TAATCAGAACCACAAACCTTGTGATGACTCCACCCAATTTGGGTAGTGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCAGAACCACAAACCTTGTGATGACTCCACCCAATTTGGGTAGTGGT  650

seq1  CTTGTTTCTACTTCACGTCAGGAAATCCTCATTGGAAATCCTTTTTCAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTTCTACTTCACGTCAGGAAATCCTCATTGGAAATCCTTTTTCAGA  700

seq1  GCCACTTAAGGGTCTGGTTTAGGAATATCCTAAATGCTTCTCAATTCAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTTAAGGGTCTGGTTTAGGAATATCCTAAATGCTTCTCAATTCAAT  750

seq1  CACTTTAATTGACAGGAATCACCTCTTACTCTGCATTCTCCCCTGATGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTAATTGACAGGAATCACCTCTTACTCTGCATTCTCCCCTGATGAG  800

seq1  TTTTGTCCTTTATAGACTTGGACTGCCATGCTTTCTCTGCTAGTCCTGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTCCTTTATAGACTTGGACTGCCATGCTTTCTCTGCTAGTCCTGAA  850

seq1  AAGGGAGAGATTTTGCTGCTTTCCAAGGGCTGCAGCATATATTGGAGATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAGAGATTTTGCTGCTTTCCAAGGGCTGCAGCATATATTGGAGATA  900

seq1  TCAAAGATTTGTTATTACTGCCCTTATGTATAATGAAGTGTAAAATTCTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGATTTGTTATTACTGCCCTTATGTATAATGAAGTGTAAAATTCTG  950

seq1  CCTACATCTCTCATCTCTCCAGTGTGTCATGTCTTACACCTACAGTCTAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACATCTCTCATCTCTCCAGTGTGTCATGTCTTACACCTACAGTCTAG  1000

seq1  AGGACACAGAAACAACTGCAG-TGATTCAATTATCTCAGATACTCCCAGA  1049
      |||| |||||||||||||||| ||||||||||||||||||||||||||||
seq2  AGGAAACAGAAACAACTGCAGTTGATTCAATTATCTCAGATACTCCCAGA  1050

seq1  TCTCCTGTATTTCTGGCTTTAATGCT-GCTCATTCATCAGGATAAATCAA  1098
      ||||  | | |||||||||||||||| |||||||||  || | |||||||
seq2  TCTC--GGAATTCTGGCTTTAATGCTGGCTCATTCACTAGAAAAAATCAA  1098

seq1  TTGGTTTTGATTTCTGATTTCTTCCTGGACTTATTGCT  1136
      |||| ||||| ||||||  ||||||||||| |||||||
seq2  TTGG-TTTGA-TTCTGA-ATCTTCCTGGAC-TATTGCT  1132

seq1: chr10_104053660_104054228
seq2: B6Ng01-042C09.g_68_423 (reverse)

seq1  GAATTTCATAAATTCATTCTTTTTAATAGCTCCATTTACATTTAATTTAA  50
                                                        
seq2  --------------------------------------------------  0

seq1  TTAATGTAATTACAATTAATTAATTTATTAATTAAATAATTTAATAATTT  100
                                                        
seq2  --------------------------------------------------  0

seq1  AATTGATAAATTAATTTAATTAATTAATTTAATTAATTAAATTAAATAAT  150
                                                        
seq2  --------------------------------------------------  0

seq1  AATTTAATAATAAATTAAATATTTTAAAATTAATAATAATTTTATAAGTA  200
                                                        
seq2  --------------------------------------------------  0

seq1  AATAATTTAATTAATGTAATTTAATTAATGTAATTACATTACATTTAATA  250
         ||||| || |||         | | |||  || |||  |  | ||||
seq2  --GAATTTCATAAAT---------TCATTGT--TTTCATGGC--TGAATA  35

seq1  G--CTCCATTGTGTAAATGTACCACATTTTCTGTATCTATTCCTCTGTTG  298
      |  |||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GCACTCCATTGTGTAAATGTACCACATTTTCTGTATCCATTCCTCTGTTG  85

seq1  AGGGGCATCTGGGTTCTTTCCAGCTCCTGGCTATTATAAATAAGGCTGCT  348
      |||| |||||||||||||||||||| ||||||||||||||||||||||||
seq2  AGGGACATCTGGGTTCTTTCCAGCTTCTGGCTATTATAAATAAGGCTGCT  135

seq1  ATGAATATAGTGGAGCATGTGTCCTTCTTACCGGTTGGGGCATCTTCTGG  398
      ||||| |||||||||||||||| ||| ||||| |||||  ||||||||| 
seq2  ATGAACATAGTGGAGCATGTGTGCTTATTACCAGTTGGAACATCTTCTGA  185

seq1  ATATATGCCCAGAAGAGGTATTGCTGGATCCTCCGGTAGTACTATGTCCA  448
       ||||||||||| ||| ||||||||||||| || |||||||  |||||||
seq2  GTATATGCCCAGGAGAAGTATTGCTGGATCTTCTGGTAGTATAATGTCCA  235

seq1  ATTTTCTGACGAACCGCCAGACGGATTTCCAGAGTGGTTGTACAAGCCTG  498
      |||||||||  ||  ||||||| |||||| ||||||||||||||||| ||
seq2  ATTTTCTGAGAAATTGCCAGACTGATTTCTAGAGTGGTTGTACAAGCTTG  285

seq1  CAATCCCACCAACAATGGAGGAGTGTTCCTCTTTCTCCACATCCTCGCCA  548
      ||||||||||| |||||||||||||||||| |||||||||||||| ||||
seq2  CAATCCCACCAGCAATGGAGGAGTGTTCCTATTTCTCCACATCCTTGCCA  335

seq1  GCATCTGCTGTCACCTGAATT  569
       |||| |||||||||||||||
seq2  ACATCAGCTGTCACCTGAATT  356