BAC Information

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BAC

Clone NameB6Ng01-043B16
Chromosome3 (Build37)
Map Location 143,456,381 - 143,587,115
singlet/doubletdoublet
Overlap geneLOC100039938
Upstream genePkn2, LOC100040053, LOC100039883, 1700001N15Rik, EG668889, EG621809
Downstream geneLOC100039952, Lmo4, LOC545572, Hs2st1, Sep15, LOC435761, Sh3glb1, LOC668890, Clca1, Clca2, Clca4, EG622139, AI747448
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-043B16.bB6Ng01-043B16.g
ACCDH869270DH869271
length8491,143
definitionDH869270|Mus musculus domesticus DNA, BAC clone: B6Ng01-043B16, 5' end.DH869271|Mus musculus domesticus DNA, BAC clone: B6Ng01-043B16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(143,456,381 - 143,457,229)(143,585,960 - 143,587,115)
sequence
gaattcatatcaatgcaagaaacacctaaaacctgcatcctacagataca
gacatggtaaagtcataaatgtgtgcttgaaatttgtgtctctctgtcat
aaatatttatggtgcctgagttttcttttataattcaagcaggctatact
ttaaagagttctgatgtgtagagcccagatgataccagaagaaacactga
gttaacattgggacataaataaaacaagaccaaatgagttctagtcatca
acttcattcaaggagttcattggttaccaatatggtcaccaagtttccag
gagacagtagagttgataccagagctaagatttatctcagataccactgt
gctgaagccaccctgctacatccatcccattgattcttgtgtcactcaaa
ggctacagatgtggctacgactaatagcacagatgctaaggcacaaatgc
aaaggattatgagactccataacagaaccccaaagtgttctcccaatatg
aagatagtgaccattgaatactgtgttctagccttaaaagtctcactttc
caaacttaagcaagatgtaaatgtgggttcccctaacctttgatctatct
ctccagtccttaaaaatgtgtcctcttaaatgggaaaatgtgttttcact
tatagacacatacacacagaaggaaggaagaaatgaaagaagggaaggaa
ggaaggaaggaaggaaggaaggaaggaaggaaggaaaataaaaagagaga
aagaaagaaggaaagaaagagaaagaaagaaagaaagaaagaaagaaaga
aagaaagaaagaaagaaagaaagaagaaagaggaagggagggagggagg
gaattcacacctatttcaaccacaaggacaaagaaaatatgaacaagaag
agattgaagaaaggtctatacagctgtgttcagtgacggcaggcgcttgg
aacggtgagtgctcaaagccttcaagtggcctagggtaaggagattaatg
gagaataggaagatacgtaaaattaagttggaatgaacattaaggcagag
aattaaactttggctgcataatagtttggattttaggcaacaaaatgagt
tctgtgataatggaaatctcatttaggagtaagataatgtagaataaaaa
aatcacccctgaaaaggtgaatgcctgctatttcccagacccccacatat
gatattactttctgccaaatgtagttatggaaggctgggccagttttttt
ttttccagaagttttgttgtgtgtttgtgtttgctttttaagttttgaga
gagcttctcttgctttttaggccaggttggctattaattcttgaacttac
tgcgtccacctcagaagcttcctgtcttacactaccatacactcaactct
aaaggaagttctgaattagaaacacaagcaattgcttcttttctcccatg
gtatcattacaaggattgaataagggatcatgagaaagctccagaccctg
gtatgccaaatgtgtccttcacattatctctaaaggagacaatcacagcg
aagaagcatcttctaccttcccagacgtgcacgcttcttttattcatggt
caacctgtgccactgacacaggggcggcttcgcctctcgatttcaccctc
ggagctgtcagtgtgcagcaggtgactttgtgtacattggcctcatcagt
ccttcttctacttctctcctaggtagttgacctctaacccctctgccgtt
ctcgtagaggtggtatgggactcatcattaccatagctaagagcccaggg
aaaatttctatttgtggctttctgcattctattgagtcttactcaggcag
ctaagtcacctccctccttttatcaacacatattcaccctactgagatct
gagtctgtctggtaacttgcctttcatactctctctagattaaacagttc
cctggtttctacgaactcttgttggtttggtgagttttgctac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_143456381_143457229
seq2: B6Ng01-043B16.b_42_890

seq1  GAATTCATATCAATGCAAGAAACACCTAAAACCTGCATCCTACAGATACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATCAATGCAAGAAACACCTAAAACCTGCATCCTACAGATACA  50

seq1  GACATGGTAAAGTCATAAATGTGTGCTTGAAATTTGTGTCTCTCTGTCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGGTAAAGTCATAAATGTGTGCTTGAAATTTGTGTCTCTCTGTCAT  100

seq1  AAATATTTATGGTGCCTGAGTTTTCTTTTATAATTCAAGCAGGCTATACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTTATGGTGCCTGAGTTTTCTTTTATAATTCAAGCAGGCTATACT  150

seq1  TTAAAGAGTTCTGATGTGTAGAGCCCAGATGATACCAGAAGAAACACTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGAGTTCTGATGTGTAGAGCCCAGATGATACCAGAAGAAACACTGA  200

seq1  GTTAACATTGGGACATAAATAAAACAAGACCAAATGAGTTCTAGTCATCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAACATTGGGACATAAATAAAACAAGACCAAATGAGTTCTAGTCATCA  250

seq1  ACTTCATTCAAGGAGTTCATTGGTTACCAATATGGTCACCAAGTTTCCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCATTCAAGGAGTTCATTGGTTACCAATATGGTCACCAAGTTTCCAG  300

seq1  GAGACAGTAGAGTTGATACCAGAGCTAAGATTTATCTCAGATACCACTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAGTAGAGTTGATACCAGAGCTAAGATTTATCTCAGATACCACTGT  350

seq1  GCTGAAGCCACCCTGCTACATCCATCCCATTGATTCTTGTGTCACTCAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAGCCACCCTGCTACATCCATCCCATTGATTCTTGTGTCACTCAAA  400

seq1  GGCTACAGATGTGGCTACGACTAATAGCACAGATGCTAAGGCACAAATGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTACAGATGTGGCTACGACTAATAGCACAGATGCTAAGGCACAAATGC  450

seq1  AAAGGATTATGAGACTCCATAACAGAACCCCAAAGTGTTCTCCCAATATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGATTATGAGACTCCATAACAGAACCCCAAAGTGTTCTCCCAATATG  500

seq1  AAGATAGTGACCATTGAATACTGTGTTCTAGCCTTAAAAGTCTCACTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAGTGACCATTGAATACTGTGTTCTAGCCTTAAAAGTCTCACTTTC  550

seq1  CAAACTTAAGCAAGATGTAAATGTGGGTTCCCCTAACCTTTGATCTATCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTTAAGCAAGATGTAAATGTGGGTTCCCCTAACCTTTGATCTATCT  600

seq1  CTCCAGTCCTTAAAAATGTGTCCTCTTAAATGGGAAAATGTGTTTTCACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGTCCTTAAAAATGTGTCCTCTTAAATGGGAAAATGTGTTTTCACT  650

seq1  TATAGACACATACACACAGAAGGAAGGAAGAAATGAAAGAAGGGAAGGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGACACATACACACAGAAGGAAGGAAGAAATGAAAGAAGGGAAGGAA  700

seq1  GGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAAATAAAAAGAGAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAAATAAAAAGAGAGA  750

seq1  AAGAAAGAAGGAAAGAAAGAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGAAGGAAAGAAAGAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGA  800

seq1  AAGAAAGAAAGAAAGAAAGAAAGAAGAAAGAGGAAGGGAGGGAGGGAGG  849
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGAAAGAAAGAAAGAAAGAAGAAAGAGGAAGGGAGGGAGGGAGG  849

seq1: chr3_143585960_143587115
seq2: B6Ng01-043B16.g_67_1209 (reverse)

seq1  GTAGCAAAAACTCACCATTACAAACAAGGAGTCTCAGTAAGAAACCAGGG  50
      ||||| |||||||||||  || ||||| |||| || || |||||||||||
seq2  GTAGC-AAAACTCACCA-AACCAACAA-GAGT-TC-GT-AGAAACCAGGG  44

seq1  AACTGTGTTAATCTAGGAAGAAGAGTATTGAAAAGGCAAGTTAACAGACA  100
      |||||| |||||||||  || |||||||   |||||||||||| ||||||
seq2  AACTGT-TTAATCTAG--AG-AGAGTAT--GAAAGGCAAGTTACCAGACA  88

seq1  GACTCAAGATCTCAGTAGGGTTGAATATGTGTTGGATAGAGGAGTGAGGT  150
      ||||| |||||||||||||| |||||||||||||   | ||||| |||||
seq2  GACTC-AGATCTCAGTAGGG-TGAATATGTGTTGATAAAAGGAGGGAGGT  136

seq1  GACTTAGCTGCCTGAGTAAGACTCAATAGAATGCAGAAAG-CACAAATAG  199
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GACTTAGCTGCCTGAGTAAGACTCAATAGAATGCAGAAAGCCACAAATAG  186

seq1  AAATTTTCCCTGGGCTCTTAGCTATGGTAATGATGAGTCCCATACCACCT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTCCCTGGGCTCTTAGCTATGGTAATGATGAGTCCCATACCACCT  236

seq1  CTACGAGAACGGCAGAGGGGTTAGAGGTCAACTACCTAGGAGAGAAGTAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACGAGAACGGCAGAGGGGTTAGAGGTCAACTACCTAGGAGAGAAGTAG  286

seq1  AAGAAGGACTGATGAGGCCAATGTACACAAAGTCACCTGCTGCACACTGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGGACTGATGAGGCCAATGTACACAAAGTCACCTGCTGCACACTGA  336

seq1  CAGCTCCGAGGGTGAAATCGAGAGGCGAAGCCGCCCCTGTGTCAGTGGCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCCGAGGGTGAAATCGAGAGGCGAAGCCGCCCCTGTGTCAGTGGCA  386

seq1  CAGGTTGACCATGAATAAAAGAAGCGTGCACGTCTGGGAAGGTAGAAGAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTGACCATGAATAAAAGAAGCGTGCACGTCTGGGAAGGTAGAAGAT  436

seq1  GCTTCTTCGCTGTGATTGTCTCCTTTAGAGATAATGTGAAGGACACATTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTTCGCTGTGATTGTCTCCTTTAGAGATAATGTGAAGGACACATTT  486

seq1  GGCATACCAGGGTCTGGAGCTTTCTCATGATCCCTTATTCAATCCTTGTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATACCAGGGTCTGGAGCTTTCTCATGATCCCTTATTCAATCCTTGTA  536

seq1  ATGATACCATGGGAGAAAAGAAGCAATTGCTTGTGTTTCTAATTCAGAAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATACCATGGGAGAAAAGAAGCAATTGCTTGTGTTTCTAATTCAGAAC  586

seq1  TTCCTTTAGAGTTGAGTGTATGGTAGTGTAAGACAGGAAGCTTCTGAGGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTAGAGTTGAGTGTATGGTAGTGTAAGACAGGAAGCTTCTGAGGT  636

seq1  GGACGCAGTAAGTTCAAGAATTAATAGCCAACCTGGCCTAAAAAGCAAGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACGCAGTAAGTTCAAGAATTAATAGCCAACCTGGCCTAAAAAGCAAGA  686

seq1  GAAGCTCTCTCAAAACTTAAAAAGCAAACACAAACACACAACAAAACTTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTCTCTCAAAACTTAAAAAGCAAACACAAACACACAACAAAACTTC  736

seq1  TGGAAAAAAAAAAACTGGCCCAGCCTTCCATAACTACATTTGGCAGAAAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAAAAAAAAACTGGCCCAGCCTTCCATAACTACATTTGGCAGAAAG  786

seq1  TAATATCATATGTGGGGGTCTGGGAAATAGCAGGCATTCACCTTTTCAGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATCATATGTGGGGGTCTGGGAAATAGCAGGCATTCACCTTTTCAGG  836

seq1  GGTGATTTTTTTATTCTACATTATCTTACTCCTAAATGAGATTTCCATTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGATTTTTTTATTCTACATTATCTTACTCCTAAATGAGATTTCCATTA  886

seq1  TCACAGAACTCATTTTGTTGCCTAAAATCCAAACTATTATGCAGCCAAAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGAACTCATTTTGTTGCCTAAAATCCAAACTATTATGCAGCCAAAG  936

seq1  TTTAATTCTCTGCCTTAATGTTCATTCCAACTTAATTTTACGTATCTTCC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTCTCTGCCTTAATGTTCATTCCAACTTAATTTTACGTATCTTCC  986

seq1  TATTCTCCATTAATCTCCTTACCCTAGGCCACTTGAAGGCTTTGAGCACT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTCCATTAATCTCCTTACCCTAGGCCACTTGAAGGCTTTGAGCACT  1036

seq1  CACCGTTCCAAGCGCCTGCCGTCACTGAACACAGCTGTATAGACCTTTCT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCGTTCCAAGCGCCTGCCGTCACTGAACACAGCTGTATAGACCTTTCT  1086

seq1  TCAATCTCTTCTTGTTCATATTTTCTTTGTCCTTGTGGTTGAAATAGGTG  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATCTCTTCTTGTTCATATTTTCTTTGTCCTTGTGGTTGAAATAGGTG  1136

seq1  TGAATTC  1156
      |||||||
seq2  TGAATTC  1143