BAC Information

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BAC

Clone NameB6Ng01-043H07
Chromosome3 (Build37)
Map Location 65,111,101 - 65,217,515
singlet/doubletdoublet
Overlap geneKcnab1, Ssr3, EG433604
Upstream gene4930518C23Rik, EG667031, EG637053, LOC672951, EG639869, EG667060, EG667069, LOC100040918, 4933425M15Rik, LOC670110
Downstream geneEG667093, LOC100041083, 4931440P22Rik, Tiparp, LOC545530, LOC100040978, EG624866, Ccnl1, LOC625048, Veph1, Tpi-rs2, Ptx3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-043H07.bB6Ng01-043H07.g
ACCDH869514DH869515
length1,130633
definitionDH869514|Mus musculus domesticus DNA, BAC clone: B6Ng01-043H07, 5' end.DH869515|Mus musculus domesticus DNA, BAC clone: B6Ng01-043H07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,111,101 - 65,112,238)(65,216,883 - 65,217,515)
sequence
gaattcaataatttgtgtgcagcataatgtccaacacataatgaacacca
agtgtcattttgtcatgatcttgtgttatgagcacagctgctttatggag
ctcatgacgtatgaggctgccatgatgaatgccacccctaccctagggaa
agcttccagctttttcctccaaacacaagtcctgctaagatttactatgc
aactgggtgctgaagtcaagtccagtctgccctcctagcagccacccttc
ctctctactatcaccagtgcatgtgccatctacccaacaacccagaaagt
ccagctggccaaacagggcagtgtggtactcaaaaatttgttttcttttt
aatctaattggtcaggaagagattcagaaaatggttcacaaaatcaatgc
agagagagagagagagagagagagagagagagagagagagagagagagag
atggagaaacattttttgaatctccattgtcttaggattcacagtgtatg
tgtgtttgatttcagaattctttttcggtaacttttctttaggtctcatt
taactgaataggaacacctgaaatttctgtttttttagttaagggattct
cttaggatggtaacaagttcaacaaaactctacgctgacccagattcaga
cttgaacacaagcattcagtttggagactgagaccacttgttatgttatt
attggtgctcctttgaagtttgtagtttcagccaaagacaagggctaata
agtaggagttaaccccataggacatttgtatgcaaactgaaattggagaa
ttaaatgaattctgcagaggaggagcgccatgagattcttaagccaaaat
acagtttgaagaagtatacacataattatacttggatttcattggtatat
tccttttgagaaagtggccttattaaacattggtgattcatatgcacatt
aatccaaggagcaacgtagaaattagataaagctggctgaccttggacac
ctgagtattttacagagtataattgagtttgcctgtgggtatataaggtt
tttaaatgtttggaaaaggcttctcctatgagttaaggctctacataggc
ccagttaatatggatttcctccttccttta
gaattctatggctggatgagaaggcagaaagaaaagagagagggagacag
aaagagacagagagagtaggtctggcttgaacactagaaatctcaaagcc
tacccccagtgataacacttctttgagaaaggccatgcctactccaaatc
tgcacctcataattgtgccacaccctgttatcctctgggggccattttca
ttcaaaccaccacagatgtcttaccttcatatttaggtcattcagacttg
ttgattttccagcatcaagttttcctcatgcttctgtttctacgaggaag
ctattggggcatctcttggctttgggacacctttatttttcctgaacctg
gtatcctaaggcctcgtcttttcctaagccatacatgtctttcctaagtc
tcacatgtctttctccctttgatcccaagataacataaactaagtcaagc
acttacttcaattttcaggccaaagaacttcttggttcaagaaccttgaa
catctacctgtatagaaaaggcttctccccatttcttatgtgatatgtat
ataaatgtgtgatgtatgttttcatctgtgtgggatcatgtatgcatgtt
ttgtgtgtgtgtatatgtgtgtgtatgtatgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_65111101_65112238
seq2: B6Ng01-043H07.b_45_1174

seq1  GAATTCAATAATTTGTGTGCAGCATAATGTCCAACACATAATGAACACCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATAATTTGTGTGCAGCATAATGTCCAACACATAATGAACACCA  50

seq1  AGTGTCATTTTGTCATGATCTTGTGTTATGAGCACAGCTGCTTTATGGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCATTTTGTCATGATCTTGTGTTATGAGCACAGCTGCTTTATGGAG  100

seq1  CTCATGACGTATGAGGCTGCCATGATGAATGCCACCCCTACCCTAGGGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGACGTATGAGGCTGCCATGATGAATGCCACCCCTACCCTAGGGAA  150

seq1  AGCTTCCAGCTTTTTCCTCCAAACACAAGTCCTGCTAAGATTTACTATGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCCAGCTTTTTCCTCCAAACACAAGTCCTGCTAAGATTTACTATGC  200

seq1  AACTGGGTGCTGAAGTCAAGTCCAGTCTGCCCTCCTAGCAGCCACCCTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGGTGCTGAAGTCAAGTCCAGTCTGCCCTCCTAGCAGCCACCCTTC  250

seq1  CTCTCTACTATCACCAGTGCATGTGCCATCTACCCAACAACCCAGAAAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTACTATCACCAGTGCATGTGCCATCTACCCAACAACCCAGAAAGT  300

seq1  CCAGCTGGCCAAACAGGGCAGTGTGGTACTCAAAAATTTGTTTTCTTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTGGCCAAACAGGGCAGTGTGGTACTCAAAAATTTGTTTTCTTTTT  350

seq1  AATCTAATTGGTCAGGAAGAGATTCAGAAAATGGTTCACAAAATCAATGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTAATTGGTCAGGAAGAGATTCAGAAAATGGTTCACAAAATCAATGC  400

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  450

seq1  ATGGAGAAACATTTTTTGAATCTCCATTGTCTTAGGATTCACAGTGTATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGAAACATTTTTTGAATCTCCATTGTCTTAGGATTCACAGTGTATG  500

seq1  TGTGTTTGATTTCAGAATTCTTTTTCGGTAACTTTTCTTTAGGTCTCATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTGATTTCAGAATTCTTTTTCGGTAACTTTTCTTTAGGTCTCATT  550

seq1  TAACTGAATAGGAACACCTGAAATTTCTGTTTTTTTAGTTAAGGGATTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGAATAGGAACACCTGAAATTTCTGTTTTTTTAGTTAAGGGATTCT  600

seq1  CTTAGGATGGTAACAAGTTCAACAAAACTCTACGCTGACCCAGATTCAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGATGGTAACAAGTTCAACAAAACTCTACGCTGACCCAGATTCAGA  650

seq1  CTTGAACACAAGCATTCAGTTTGGAGACTGAGACCACTTGTTATGTTATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAACACAAGCATTCAGTTTGGAGACTGAGACCACTTGTTATGTTATT  700

seq1  ATTGGTGCTCCTTTGAAGTTTGTAGTTTCAGCCAAAGACAAGGGCTAATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTGCTCCTTTGAAGTTTGTAGTTTCAGCCAAAGACAAGGGCTAATA  750

seq1  AGTAGGAGTTAACCCCATAGGACATTTGTATGCAAACTGAAATTGGAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGGAGTTAACCCCATAGGACATTTGTATGCAAACTGAAATTGGAGAA  800

seq1  TTAAATGAATTCTGCAGAGGAGGAGCGCCATGAGATTCTTAAGCCAAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TTAAATGAATTCTGCAGAGGAGGAGCGCCATGAGATTCTTAAGCC-AAAA  849

seq1  TACAGTTTGAAGAAGTATACACATAATTATACTTGGATTTCATTGGTATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTTTGAAGAAGTATACACATAATTATACTTGGATTTCATTGGTATA  899

seq1  TTCCTTTTGAGAAAGGTGGCCTTATTAAACATTGGTGATTCATATGCACA  950
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TTCCTTTTGAGAAA-GTGGCCTTATTAAACATTGGTGATTCATATGCACA  948

seq1  TTAAATCCAAGGAGCAACGTTAGAAAATAAGATAAAGCTGGCTGACCTTG  1000
      || |||||||||||||||| ||| |||| |||||||||||||||||||||
seq2  TT-AATCCAAGGAGCAACG-TAG-AAATTAGATAAAGCTGGCTGACCTTG  995

seq1  GACACCTGAGTTATTTTACAGAGTATAAATGAGTTTGGCTTGTGTGTAAT  1050
      |||||||||| ||||||||||||||||| ||||||| || |||| || ||
seq2  GACACCTGAG-TATTTTACAGAGTATAATTGAGTTT-GCCTGTGGGT-AT  1042

seq1  ATAGGTTTTTTAAATGTAT-GAAAAGCCTTCT-CTATGAGTTAAAGTCTT  1098
      ||| | ||||||||||| | |||||| ||||| ||||||||||| |   |
seq2  ATAAGGTTTTTAAATGTTTGGAAAAGGCTTCTCCTATGAGTTAAGG--CT  1090

seq1  CAACATAGCCCCAGTTAATAT-GATTTCCTCCTTATCTTTA  1138
      | |||||| |||||||||||| ||||||||||||  |||||
seq2  CTACATAGGCCCAGTTAATATGGATTTCCTCCTT-CCTTTA  1130

seq1: chr3_65216883_65217515
seq2: B6Ng01-043H07.g_68_700 (reverse)

seq1  TACATACATACACACACATATACACACACACAAAACATGCATACATGATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATACATACACACACATATACACACACACAAAACATGCATACATGATC  50

seq1  CCACACAGATGAAAACATACATCACACATTTATATACATATCACATAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACAGATGAAAACATACATCACACATTTATATACATATCACATAAGA  100

seq1  AATGGGGAGAAGCCTTTTCTATACAGGTAGATGTTCAAGGTTCTTGAACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGGAGAAGCCTTTTCTATACAGGTAGATGTTCAAGGTTCTTGAACC  150

seq1  AAGAAGTTCTTTGGCCTGAAAATTGAAGTAAGTGCTTGACTTAGTTTATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGTTCTTTGGCCTGAAAATTGAAGTAAGTGCTTGACTTAGTTTATG  200

seq1  TTATCTTGGGATCAAAGGGAGAAAGACATGTGAGACTTAGGAAAGACATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTTGGGATCAAAGGGAGAAAGACATGTGAGACTTAGGAAAGACATG  250

seq1  TATGGCTTAGGAAAAGACGAGGCCTTAGGATACCAGGTTCAGGAAAAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGCTTAGGAAAAGACGAGGCCTTAGGATACCAGGTTCAGGAAAAATA  300

seq1  AAGGTGTCCCAAAGCCAAGAGATGCCCCAATAGCTTCCTCGTAGAAACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGTCCCAAAGCCAAGAGATGCCCCAATAGCTTCCTCGTAGAAACAG  350

seq1  AAGCATGAGGAAAACTTGATGCTGGAAAATCAACAAGTCTGAATGACCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATGAGGAAAACTTGATGCTGGAAAATCAACAAGTCTGAATGACCTA  400

seq1  AATATGAAGGTAAGACATCTGTGGTGGTTTGAATGAAAATGGCCCCCAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGAAGGTAAGACATCTGTGGTGGTTTGAATGAAAATGGCCCCCAGA  450

seq1  GGATAACAGGGTGTGGCACAATTATGAGGTGCAGATTTGGAGTAGGCATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAACAGGGTGTGGCACAATTATGAGGTGCAGATTTGGAGTAGGCATG  500

seq1  GCCTTTCTCAAAGAAGTGTTATCACTGGGGGTAGGCTTTGAGATTTCTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTCTCAAAGAAGTGTTATCACTGGGGGTAGGCTTTGAGATTTCTAG  550

seq1  TGTTCAAGCCAGACCTACTCTCTCTGTCTCTTTCTGTCTCCCTCTCTCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAAGCCAGACCTACTCTCTCTGTCTCTTTCTGTCTCCCTCTCTCTT  600

seq1  TTCTTTCTGCCTTCTCATCCAGCCATAGAATTC  633
      |||||||||||||||||||||||||||||||||
seq2  TTCTTTCTGCCTTCTCATCCAGCCATAGAATTC  633