BAC Information

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BAC

Clone NameB6Ng01-043M12
Chromosome3 (Build37)
Map Location 113,991,246 - 114,067,631
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC668723, Amy2-2, Amy2-1, LOC100043684, LOC100043686, LOC100043688, LOC100043207, Amy1, Rnpc3, Col11a1
Downstream geneLOC100043220, Olfm3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-043M12.bB6Ng01-043M12.g
ACCDH869739DH869740
length1,1711,192
definitionDH869739|Mus musculus domesticus DNA, BAC clone: B6Ng01-043M12, 5' end.DH869740|Mus musculus domesticus DNA, BAC clone: B6Ng01-043M12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,991,246 - 113,992,443)(114,066,410 - 114,067,631)
sequence
gaattcaagttcaaagtctttcatggacacagagttcccatttttatatt
atttttctcacatatctgtataattatgcaacaaagaaagctttaatttg
ccctttttatttcaataaaggctactgtgatattagagctccctaaacaa
catttttatgactgaatgattccttcaatattaatttttctctaagcttt
aattatgttttacaaacaacatttcaaagtatttcatctagttgtttgtg
ggtgttcttagacaaacacaattctgaagtacacaatcctggaattttaa
gtaataaaaaacagtagcaagcaagaacaagaatgaaggttgttagcgaa
caagtcccattgatttatatggtcatatttataggagatggctcactctt
ttaccatgcattcgtaagtataaaaaaagaatcaaatgtctaccttatga
cattaattggaatagtattacattgatgttgaatgaagaatttcaaaatt
ttttctctatgaaacaaggtttacaaaatcagtgctgtcgagtatctata
caagaagaaacacaatgagaagtaatttaataattaataataataattaa
aataattttaaatatgagtataaacaaaaataacataacaaaattcaatg
gaaaggctgagggggaaagtctcagggctatgatttcttcacttgtactt
ctttgcttctctgacaagacatgaaggatttttggttttgggagcaagta
caatcagaagagtgacctccagccactgtgaaaaggaaccacttcccttg
aatgccacagccacaggcattccctttaattcacttaaggatgagtagcc
ctgtccaagtctgacttcattgattttgatgtttcatggattcttggaac
atgaatttttggctcatcatctgtgttggctgccttgagatctttgtagg
catcacctcacaaccttggagagcatgagaatatcaaccttgagatggcc
tgaatggattcaatgattgatacaaagagctgggatgtgttgtaaactat
ctccacatctcagggcattctagttctgctcttgtattgttaatagtggc
atacccatcttcctacaacttgggttagagccatattaagcaattactga
tgattcaaggaggttgggaat
gaattcaggaaacttgtaattttacttcttttctatgagcatgcatgaat
ataaatatttttatgaattatttgtgttggcacctgttaattttcccttc
ttcaatttaatttgcagaccccttaatatcacttctaggagaaatgagaa
aaaaacacattttcttcataatgttataaagctagagataattcaaactg
attgtgggactcaggtgagataagtgtattcataaactctcacaaaatgt
gtatattaatttttttaagaataaaagaaagtctcagaagattttcagac
ttagaacaacctaacaagtgccttcagtgtgacccgatgcaaattaaaga
actgttctaagtcttgtcaagttcacacaatatcagcatcatgatacaca
cagaaggtttttctgaaattatagatgagtttaattggcaagtgcagtat
aaagaaaatgagaggaaaatgagatccgaggaattagctctagttctcca
cctaactgaatctgagctgcctctgttttctcctcttatggtgtctttta
tcatagtgtatgatggggtcagtaattcaaaaagctttgtgtttcaacta
agcacccgatctataaatattactctcattagtcattaaatgtcactaat
gataaaagtttactctcatgtattaatattaaaatctatacttactgttg
cttaatgaagttattaaatataatgtcatttaagcctgtgtataagctat
tttgaaatgacatctacttagtttatacctggtttgcaataccaaagagg
aaaaaatgcatctacttttagttattggcagttctttcacaagccggaac
aggaaaaagaaaagaatagattacagttaggaagatatcatgttaaccac
ctcctggcatttggctcatacagaatggtataagaatgtgtgtttcagag
ctattataaatgtgtgatccagacattttattctatttatttgctatttg
ctgtgaaaggcataccccccacacaaaaacaaacaacaattcttatgcat
aagaatcatttgcgtaacacatctcttgtcctccctcctacaatccccct
cctctttccaagtgtgtgataggtgtgtgtgtggcatccacataaagaac
catgtgtccgaacggttgggaaatataaagaatgcagtcaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_113991246_113992443
seq2: B6Ng01-043M12.b_43_1213

seq1  GAATTCAAGTTCAAAGTCTTTCATGGACACAGAGTTCCCATTTTTATATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGTTCAAAGTCTTTCATGGACACAGAGTTCCCATTTTTATATT  50

seq1  ATTTTTCTCACATATCTGTATAATTATGCAACAAAGAAAGCTTTAATTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCTCACATATCTGTATAATTATGCAACAAAGAAAGCTTTAATTTG  100

seq1  CCCTTTTTATTTCAATAAAGGCTACTGTGATATTAGAGCTCCCTAAACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTTTATTTCAATAAAGGCTACTGTGATATTAGAGCTCCCTAAACAA  150

seq1  CATTTTTATGACTGAATGATTCCTTCAATATTAATTTTTCTCTAAGCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTATGACTGAATGATTCCTTCAATATTAATTTTTCTCTAAGCTTT  200

seq1  AATTATGTTTTACAAACAACATTTCAAAGTATTTCATCTAGTTGTTTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATGTTTTACAAACAACATTTCAAAGTATTTCATCTAGTTGTTTGTG  250

seq1  GGTGTTCTTAGACAAACACAATTCTGAAGTACACAATCCTGGAATTTTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTTCTTAGACAAACACAATTCTGAAGTACACAATCCTGGAATTTTAA  300

seq1  GTAATAAAAAACAGTAGCAAGCAAGAACAAGAATGAAGGTTGTTAGCGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATAAAAAACAGTAGCAAGCAAGAACAAGAATGAAGGTTGTTAGCGAA  350

seq1  CAAGTCCCATTGATTTATATGGTCATATTTATAGGAGATGGCTCACTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCCCATTGATTTATATGGTCATATTTATAGGAGATGGCTCACTCTT  400

seq1  TTACCATGCATTCGTAAGTATAAAAAAAGAATCAAATGTCTACCTTATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCATGCATTCGTAAGTATAAAAAAAGAATCAAATGTCTACCTTATGA  450

seq1  CATTAATTGGAATAGTATTACATTGATGTTGAATGAAGAATTTCAAAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAATTGGAATAGTATTACATTGATGTTGAATGAAGAATTTCAAAATT  500

seq1  TTTTCTCTATGAAACAAGGTTTACAAAATCAGTGCTGTCGAGTATCTATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCTATGAAACAAGGTTTACAAAATCAGTGCTGTCGAGTATCTATA  550

seq1  CAAGAAGAAACACAATGAGAAGTAATTTAATAATTAATAATAATAATTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAGAAACACAATGAGAAGTAATTTAATAATTAATAATAATAATTAA  600

seq1  AATAATTTTAAATATGAGTATAAACAAAAATAACATAACAAAATTCAATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATTTTAAATATGAGTATAAACAAAAATAACATAACAAAATTCAATG  650

seq1  GAAAGGCTGAGGGGGAAAGTCTCAGGGCTATGATTTCTTCACTTGTACTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGCTGAGGGGGAAAGTCTCAGGGCTATGATTTCTTCACTTGTACTT  700

seq1  CTTTGCTTCTCTGACAAGACATGAAGGATTTTTGGTTTTGGGAGCAAGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCTTCTCTGACAAGACATGAAGGATTTTTGGTTTTGGGAGCAAGTA  750

seq1  CAATCAGAAGAGTGACCTCCAGCCACTGTGAAAAGGAACCACTTCCCTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCAGAAGAGTGACCTCCAGCCACTGTGAAAAGGAACCACTTCCCTTG  800

seq1  AATGCCACAGCCACAGGCATTCCCTTTAAATTCACTTAAGGATGAGTAGC  850
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AATGCCACAGCCACAGGCATTCCCTTT-AATTCACTTAAGGATGAGTAGC  849

seq1  CCTGTCCAAGTCTGACTTCATTGATTTTGATGTTTCATGGATTCTTGGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCCAAGTCTGACTTCATTGATTTTGATGTTTCATGGATTCTTGGAA  899

seq1  CATGAATTTTTGGCTCATCATCTGTGTTGGCTGCCTTGAGATCTTTGTAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAATTTTTGGCTCATCATCTGTGTTGGCTGCCTTGAGATCTTTGTAG  949

seq1  GCATCACCTCACAACCTTGGAGAGCATTGAGAAATATCAACCTTGAAGAA  1000
      |||||||||||||||||||||||||| |||| ||||||||||||||   |
seq2  GCATCACCTCACAACCTTGGAGAGCA-TGAG-AATATCAACCTTGA--GA  995

seq1  TGGCCTGAATGGAATTCAAAATGATTGAATAACAAAGAAGCTGGGATGTG  1050
      |||||||||||| ||||  |||||||||   |||||| ||||||||||||
seq2  TGGCCTGAATGG-ATTC--AATGATTGA--TACAAAG-AGCTGGGATGTG  1039

seq1  TTGTTAAAACTATCTCCACATCTCAAGGGCATTTCTAGTTTCTGGCTCTT  1100
      ||||  |||||||||||||||||| |||||| |||||| |||| ||||||
seq2  TTGT--AAACTATCTCCACATCTC-AGGGCA-TTCTAG-TTCT-GCTCTT  1083

seq1  GTATTGTTTAAATAGGTGCATACCCATCTTTCTTACAACTTGGTTTAGAA  1150
      ||||||||  |||||  ||||||||||| ||| |||||||||| |||| |
seq2  GTATTGTT--AATAGTGGCATACCCATC-TTCCTACAACTTGGGTTAG-A  1129

seq1  GCCATATATAAGGCAATATAACTGATGGATTCAAGGAGGTTTTGGAAT  1198
      ||||||| ||| |||  || |||||| |||||||||||| || |||||
seq2  GCCATAT-TAA-GCA--ATTACTGAT-GATTCAAGGAGG-TTGGGAAT  1171

seq1: chr3_114066410_114067631
seq2: B6Ng01-043M12.g_67_1258 (reverse)

seq1  TTTGACTGCATCTCTTTATTATTTTCCCAAACTGTTCTGACAACATTGTT  50
      ||||||||||| |||||| |||||  || ||| |||| ||| |||| |||
seq2  TTTGACTGCAT-TCTTTA-TATTT--CCCAACCGTTCGGAC-ACATGGTT  45

seq1  CTTTTATGTTGTGAAATGCACACACACACACATA-CACACACATGAGAAA  99
      | ||||||| |    |||| ||||||||||| || ||||||| || ||||
seq2  C-TTTATGTGG----ATGC-CACACACACACCTATCACACACTTG-GAAA  88

seq1  GAGAGAGGGGGGATTGTAGGGAGGGAGGGAAAAAGAGATGTGTTAAGGGA  149
      ||| || ||||||||||| |||||||||  | |||||||||||||   | 
seq2  GAG-GA-GGGGGATTGTA-GGAGGGAGG--ACAAGAGATGTGTTA--CGC  131

seq1  AAATGAATTCTTTATGGCAATAAGAATGTGTTTGTATGTTTGTGTGTGGG  199
      ||||| |||| |||||   |||||||| || |||| ||||| ||||||||
seq2  AAATG-ATTC-TTATG--CATAAGAAT-TG-TTGTTTGTTTTTGTGTGGG  175

seq1  GGGTATGCCTTTCACAGCAAATAAGCAAATAAAATAGAATAAAATGTCTG  249
      |||||||||||||||||||||| ||||||| |||||||||||||||||||
seq2  GGGTATGCCTTTCACAGCAAAT-AGCAAAT-AAATAGAATAAAATGTCTG  223

seq1  GATCAACACATTTAATAATAGCTCTTGAAACACACATTCTTATACCATTC  299
      |||| |||||||| |||||||||| |||||||||||||||||||||||||
seq2  GATC-ACACATTT-ATAATAGCTC-TGAAACACACATTCTTATACCATTC  270

seq1  TTGTATGAGCCAAATGCCAGGAGGTGGTTAACATGATATCTTCCTAACTG  349
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TGTATGAGCCAAATGCCAGGAGGTGGTTAACATGATATCTTCCTAACTG  319

seq1  TAATCTATTCTTTTCTTTTTCCTGTTCCGGCTTGTGAAAGAACTGCCAAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTATTCTTTTCTTTTTCCTGTTCCGGCTTGTGAAAGAACTGCCAAT  369

seq1  AACTAAAAGTAGATGCATTTTTTCCTCTTTGGTATTGCAAACCAGGTATA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAAAGTAGATGCATTTTTTCCTCTTTGGTATTGCAAACCAGGTATA  419

seq1  AACTAAGTAGATGTCATTTCAAAATAGCTTATACACAGGCTTAAATGACA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAGTAGATGTCATTTCAAAATAGCTTATACACAGGCTTAAATGACA  469

seq1  TTATATTTAATAACTTCATTAAGCAACAGTAAGTATAGATTTTAATATTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATTTAATAACTTCATTAAGCAACAGTAAGTATAGATTTTAATATTA  519

seq1  ATACATGAGAGTAAACTTTTATCATTAGTGACATTTAATGACTAATGAGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATGAGAGTAAACTTTTATCATTAGTGACATTTAATGACTAATGAGA  569

seq1  GTAATATTTATAGATCGGGTGCTTAGTTGAAACACAAAGCTTTTTGAATT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATATTTATAGATCGGGTGCTTAGTTGAAACACAAAGCTTTTTGAATT  619

seq1  ACTGACCCCATCATACACTATGATAAAAGACACCATAAGAGGAGAAAACA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACCCCATCATACACTATGATAAAAGACACCATAAGAGGAGAAAACA  669

seq1  GAGGCAGCTCAGATTCAGTTAGGTGGAGAACTAGAGCTAATTCCTCGGAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGCTCAGATTCAGTTAGGTGGAGAACTAGAGCTAATTCCTCGGAT  719

seq1  CTCATTTTCCTCTCATTTTCTTTATACTGCACTTGCCAATTAAACTCATC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTTTCCTCTCATTTTCTTTATACTGCACTTGCCAATTAAACTCATC  769

seq1  TATAATTTCAGAAAAACCTTCTGTGTGTATCATGATGCTGATATTGTGTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATTTCAGAAAAACCTTCTGTGTGTATCATGATGCTGATATTGTGTG  819

seq1  AACTTGACAAGACTTAGAACAGTTCTTTAATTTGCATCGGGTCACACTGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGACAAGACTTAGAACAGTTCTTTAATTTGCATCGGGTCACACTGA  869

seq1  AGGCACTTGTTAGGTTGTTCTAAGTCTGAAAATCTTCTGAGACTTTCTTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACTTGTTAGGTTGTTCTAAGTCTGAAAATCTTCTGAGACTTTCTTT  919

seq1  TATTCTTAAAAAAATTAATATACACATTTTGTGAGAGTTTATGAATACAC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTTAAAAAAATTAATATACACATTTTGTGAGAGTTTATGAATACAC  969

seq1  TTATCTCACCTGAGTCCCACAATCAGTTTGAATTATCTCTAGCTTTATAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTCACCTGAGTCCCACAATCAGTTTGAATTATCTCTAGCTTTATAA  1019

seq1  CATTATGAAGAAAATGTGTTTTTTTCTCATTTCTCCTAGAAGTGATATTA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATGAAGAAAATGTGTTTTTTTCTCATTTCTCCTAGAAGTGATATTA  1069

seq1  AGGGGTCTGCAAATTAAATTGAAGAAGGGAAAATTAACAGGTGCCAACAC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGTCTGCAAATTAAATTGAAGAAGGGAAAATTAACAGGTGCCAACAC  1119

seq1  AAATAATTCATAAAAATATTTATATTCATGCATGCTCATAGAAAAGAAGT  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATTCATAAAAATATTTATATTCATGCATGCTCATAGAAAAGAAGT  1169

seq1  AAAATTACAAGTTTCCTGAATTC  1222
      |||||||||||||||||||||||
seq2  AAAATTACAAGTTTCCTGAATTC  1192