BAC Information

Click to search

BAC

Clone NameB6Ng01-043O20
Chromosome3 (Build37)
Map Location 121,060,951 - 121,190,668
singlet/doubletdoublet
Overlap geneAlg14, Ppia-ps3_1234.1, Cnn3, Slc44a3
Upstream gene2510027J23Rik, LOC435752, Tmem56, LOC668778, LOC668780
Downstream geneA730020M07Rik, 4930432M17Rik, F3, Abcd3, LOC100043298, Arhgap29, Abca4, EG668788, LOC626807, LOC100043724, Gclm, Ppia-ps3_1245.1, Dnttip2, LOC675117, LOC100043726, Bcar3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-043O20.bB6Ng01-043O20.g
ACCDH869839DH869840
length8381,131
definitionDH869839|Mus musculus domesticus DNA, BAC clone: B6Ng01-043O20, 5' end.DH869840|Mus musculus domesticus DNA, BAC clone: B6Ng01-043O20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(121,060,951 - 121,061,786)(121,189,529 - 121,190,668)
sequence
gaattcaatggtatctttaacagactttttgctttgtttcggctttagtt
tttgtttgttgttttctttttttctttctttctttctttctttctttttt
ttttttttttttgcctgttttgatttttattggggagtttttgttgttgt
ttctcgcttttgtctttgtgttttaggaagagagaaagactaaagttgaa
tgggtagagatggagagtgtctgggaggacttgggggaagggacaaacag
gatcagaatatattgtgtgaaagaaaaagaaaaacctgtggtgacaacca
tgatgttagtcagccacatacatgtaaatgtatggttaggtatgtgcagt
ctatgcacaagttacaagtggacagtcctccagagggaatcagagaagag
ttgctctctttccttacacccttgctcccacttcctcttttccttgttca
cagctttactctgttgcagactgtagactgcttttgaagtaagccaagag
tcagcggccagggcagtgatagtcagtgatgggcggatactgggaggcca
gggcagtgaggggcagtgatgggagggcactgggaggccagggcagtgaa
gggcagtgatgggagggcactgagaggccaggacagtgatgggcaggaat
gggtgagcactgagaatttgcatcatcgaccattacattcaagttcttta
acacaaagcttcttggtgaccttttttcttcccccccccccccccccgga
ttggagtaacttctctgggtatgcttcttaggatataaaatccacgtttt
tggtcttgttttttttttaaagaaaacaactctaggct
gaattcagctcaggtgtggtgttgagcgtttttgcctcctaagccagctc
tccagcctgggattttttctttctttctttttgttttttaacaatagaag
taaatagaacttagtgagccatcccttccccagctaattcattctcaagc
tacacactcaaattagatttcagaagattgattgactctgaaatttagtc
tgaaaacttcactataggacttaattttccccaacattaatcgtgattat
ttgtgtgggcacatgactagtatctataatatatgattctgatttcttgt
tggtgacaaataatttgcaaacttgaatttaaaaaaatcaaagtgttcaa
ggcatgggggcacatactcatggtctcacccccagaggctagcaagagac
ttgagagctcaggactggtcttgccatacaacagcacctttgtctccaaa
ataaaataaaataatgtagccaggcattgtggtccataactaaaatacct
acatttgggaggcagaagcagaagacacaggaggagttcaaggttagcct
tagctacatagtaaatttaaggccagcttaggctatcagaaactccgtcc
tcaaaacacacacacacacacacacacacacacacacacacacacacaca
cactgtgaataccatttgacatttgacacacttagagacagatgaagaga
aaagagaagataagaatttcttctgttgttgaataccagttaacccgttt
ccctttctgtggaagttaactgaacacaccaaaagcctgcataaagctta
gctcacctgcagtgatagcaattagtccagttgcttgcatgagattgaga
cagtggggctggcaagatggctcagtgggtaagagcactgactgctcttc
caaaggtcctgagttcaattcccagcaaccacatggtggctcacaaccat
tcataataagatctgatgtcctcttctgatgcgtctgacgtcagctacgg
tgtacttatgtataataataaatctttgggcggagcagcaggactgagtt
gggagggactgacggagcaagcgaggtcctaaaattcattcccacaccaa
tgaaggctccaaaccatctgtaagcttacag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_121060951_121061786
seq2: B6Ng01-043O20.b_46_883

seq1  GAATTCAATGGTATCTTTAACAGACTTTTTGCTTTGTTTCGGCTTTAGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGGTATCTTTAACAGACTTTTTGCTTTGTTTCGGCTTTAGTT  50

seq1  TTTGTTTGTTGTTTTCTTTTTTTCTTTCTTTCTTTCTTTCTTTCTTTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTGTTGTTTTCTTTTTTTCTTTCTTTCTTTCTTTCTTTCTTTTTT  100

seq1  TTTTTTTTTTTTGCCTGTTTTGATTTTTATTGGGGAGTTTTTGTTGTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTGCCTGTTTTGATTTTTATTGGGGAGTTTTTGTTGTTGT  150

seq1  TTCTCGCTTTTGTCTTTGTGTTTTAGGAAGAGAGAAAGACTAAAGTTGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCGCTTTTGTCTTTGTGTTTTAGGAAGAGAGAAAGACTAAAGTTGAA  200

seq1  TGGGTAGAGATGGAGAGTGTCTGGGAGGACTTGGGGGAAGGGACAAACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTAGAGATGGAGAGTGTCTGGGAGGACTTGGGGGAAGGGACAAACAG  250

seq1  GATCAGAATATATTGTGTGAAAGAAAAAGAAAAACCTGTGGTGACAACCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGAATATATTGTGTGAAAGAAAAAGAAAAACCTGTGGTGACAACCA  300

seq1  TGATGTTAGTCAGCCACATACATGTAAATGTATGGTTAGGTATGTGCAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTTAGTCAGCCACATACATGTAAATGTATGGTTAGGTATGTGCAGT  350

seq1  CTATGCACAAGTTACAAGTGGACAGTCCTCCAGAGGGAATCAGAGAAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGCACAAGTTACAAGTGGACAGTCCTCCAGAGGGAATCAGAGAAGAG  400

seq1  TTGCTCTCTTTCCTTACACCCTTGCTCCCACTTCCTCTTTTCCTTGTTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCTCTTTCCTTACACCCTTGCTCCCACTTCCTCTTTTCCTTGTTCA  450

seq1  CAGCTTTACTCTGTTGCAGACTGTAGACTGCTTTTGAAGTAAGCCAAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTTACTCTGTTGCAGACTGTAGACTGCTTTTGAAGTAAGCCAAGAG  500

seq1  TCAGCGGCCAGGGCAGTGATAGTCAGTGATGGGCGGATACTGGGAGGCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCGGCCAGGGCAGTGATAGTCAGTGATGGGCGGATACTGGGAGGCCA  550

seq1  GGGCAGTGAGGGGCAGTGATGGGAGGGCACTGGGAGGCCAGGGCAGTGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGTGAGGGGCAGTGATGGGAGGGCACTGGGAGGCCAGGGCAGTGAA  600

seq1  GGGCAGTGATGGGAGGGCACTGAGAGGCCAGGACAGTGATGGGCAGGAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGTGATGGGAGGGCACTGAGAGGCCAGGACAGTGATGGGCAGGAAT  650

seq1  GGGTGAGCACTGAGAATTTGCATCATCGACCATTACATTCAAGTTCTTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGAGCACTGAGAATTTGCATCATCGACCATTACATTCAAGTTCTTTA  700

seq1  ACACAAAGCTTCTTGGTGACC-TTTTTCTTCCCCCCCCCCCCCCCCCGTG  749
      ||||||||||||||||||||| |||||||||||||||||||||||||| |
seq2  ACACAAAGCTTCTTGGTGACCTTTTTTCTTCCCCCCCCCCCCCCCCCG-G  749

seq1  ATTGGAGTAAACCTCTCT-GGTATGCTTCTTAGGATAATAAATCCACGTT  798
      |||||||| ||| ||||| ||||||||||||||||||  |||||||||||
seq2  ATTGGAGT-AACTTCTCTGGGTATGCTTCTTAGGATATAAAATCCACGTT  798

seq1  TTTGTTTTTG--TTTTTTTTAAAGAAAACAACTCTAGGCT  836
      |||| | |||  ||||||||||||||||||||||||||||
seq2  TTTGGTCTTGTTTTTTTTTTAAAGAAAACAACTCTAGGCT  838

seq1: chr3_121189529_121190668
seq2: B6Ng01-043O20.g_68_1198 (reverse)

seq1  CTGT-AGCTGTACAGATGGTTGTGAGCCTTCATGTGGTTGTTGGGAATTG  49
      |||| |||| |||||||||||  |||||||||| ||||   |||||| ||
seq2  CTGTAAGCT-TACAGATGGTTTGGAGCCTTCAT-TGGT--GTGGGAA-TG  45

seq1  AATTTTTAGGACCTCTGCTTGCTCCGGTCAGTCCCTCTC-ACTCAGTCCC  98
      || |||||||||||| ||||||||| ||||||||||| | ||||||| ||
seq2  AA-TTTTAGGACCTC-GCTTGCTCC-GTCAGTCCCTCCCAACTCAGT-CC  91

seq1  TGCTTGCTCCGGCCCAAAGATTTATTATTATACATAAGTACACCGTAGCT  148
      ||| |||||| |||||||||||||||||||||||||||||||||||||||
seq2  TGC-TGCTCC-GCCCAAAGATTTATTATTATACATAAGTACACCGTAGCT  139

seq1  GACGTCAGACGCATCAGAAGAGGACATCAGATCTTATTATGAATGGTTGT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGTCAGACGCATCAGAAGAGGACATCAGATCTTATTATGAATGGTTGT  189

seq1  GAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGACCTTTGGAAGAGCA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGACCTTTGGAAGAGCA  239

seq1  GTCAGTGCTCTTACCCACTGAGCCATCTTGCCAGCCCCACTGTCTCAATC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTGCTCTTACCCACTGAGCCATCTTGCCAGCCCCACTGTCTCAATC  289

seq1  TCATGCAAGCAACTGGACTAATTGCTATCACTGCAGGTGAGCTAAGCTTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCAAGCAACTGGACTAATTGCTATCACTGCAGGTGAGCTAAGCTTT  339

seq1  ATGCAGGCTTTTGGTGTGTTCAGTTAACTTCCACAGAAAGGGAAACGGGT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGGCTTTTGGTGTGTTCAGTTAACTTCCACAGAAAGGGAAACGGGT  389

seq1  TAACTGGTATTCAACAACAGAAGAAATTCTTATCTTCTCTTTTCTCTTCA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGGTATTCAACAACAGAAGAAATTCTTATCTTCTCTTTTCTCTTCA  439

seq1  TCTGTCTCTAAGTGTGTCAAATGTCAAATGGTATTCACAGTGTGTGTGTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTCTAAGTGTGTCAAATGTCAAATGGTATTCACAGTGTGTGTGTG  489

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTTGAGGACGGAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTTGAGGACGGAG  539

seq1  TTTCTGATAGCCTAAGCTGGCCTTAAATTTACTATGTAGCTAAGGCTAAC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGATAGCCTAAGCTGGCCTTAAATTTACTATGTAGCTAAGGCTAAC  589

seq1  CTTGAACTCCTCCTGTGTCTTCTGCTTCTGCCTCCCAAATGTAGGTATTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAACTCCTCCTGTGTCTTCTGCTTCTGCCTCCCAAATGTAGGTATTT  639

seq1  TAGTTATGGACCACAATGCCTGGCTACATTATTTTATTTTATTTTGGAGA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTATGGACCACAATGCCTGGCTACATTATTTTATTTTATTTTGGAGA  689

seq1  CAAAGGTGCTGTTGTATGGCAAGACCAGTCCTGAGCTCTCAAGTCTCTTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGTGCTGTTGTATGGCAAGACCAGTCCTGAGCTCTCAAGTCTCTTG  739

seq1  CTAGCCTCTGGGGGTGAGACCATGAGTATGTGCCCCCATGCCTTGAACAC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCCTCTGGGGGTGAGACCATGAGTATGTGCCCCCATGCCTTGAACAC  789

seq1  TTTGATTTTTTTAAATTCAAGTTTGCAAATTATTTGTCACCAACAAGAAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATTTTTTTAAATTCAAGTTTGCAAATTATTTGTCACCAACAAGAAA  839

seq1  TCAGAATCATATATTATAGATACTAGTCATGTGCCCACACAAATAATCAC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAATCATATATTATAGATACTAGTCATGTGCCCACACAAATAATCAC  889

seq1  GATTAATGTTGGGGAAAATTAAGTCCTATAGTGAAGTTTTCAGACTAAAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAATGTTGGGGAAAATTAAGTCCTATAGTGAAGTTTTCAGACTAAAT  939

seq1  TTCAGAGTCAATCAATCTTCTGAAATCTAATTTGAGTGTGTAGCTTGAGA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAGTCAATCAATCTTCTGAAATCTAATTTGAGTGTGTAGCTTGAGA  989

seq1  ATGAATTAGCTGGGGAAGGGATGGCTCACTAAGTTCTATTTACTTCTATT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATTAGCTGGGGAAGGGATGGCTCACTAAGTTCTATTTACTTCTATT  1039

seq1  GTTAAAAAACAAAAAGAAAGAAAGAAAAAATCCCAGGCTGGAGAGCTGGC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAAAACAAAAAGAAAGAAAGAAAAAATCCCAGGCTGGAGAGCTGGC  1089

seq1  TTAGGAGGCAAAAACGCTCAACACCACACCTGAGCTGAATTC  1140
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGAGGCAAAAACGCTCAACACCACACCTGAGCTGAATTC  1131