BAC Information

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BAC

Clone NameB6Ng01-044N16
Chromosome3 (Build37)
Map Location 4,467,327 - 4,563,212
singlet/doubletdoublet
Overlap genenone
Upstream geneHnf4g, EG383815, LOC100039157, LOC100039167, LOC667709
Downstream geneLOC620283, Zfhx4, Pxmp3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-044N16.bB6Ng01-044N16.g
ACCDH870487DH870488
length1,155559
definitionDH870487|Mus musculus domesticus DNA, BAC clone: B6Ng01-044N16, 5' end.DH870488|Mus musculus domesticus DNA, BAC clone: B6Ng01-044N16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(4,562,031 - 4,563,212)(4,467,327 - 4,467,891)
sequence
gaattcagagactgggggtttgatgggctttacataaatactttttatgc
tgtgtgagctttcattcaaatcaagaacatgttggtgattggagagtagg
gctttggattcagaaattcggaaaatgaagtaagttggatgcttttatca
aaactggaggaaaagtaattgggataaaattatgtgctgataagaatatg
agtttaggagttctcaaagacatgttaagtgatcagagtagttagcaaaa
ataaagcatctgctggtgaggtgtctttagaaataatgagatgttaagtg
ttcaatttcattaacttcagcatttctttcttggcaaaacattcataaaa
gtaaaataaaagggcagtatgtacaattcttattatgtatatgatgattt
ctgagcaggctgattctaatggcttaggctggcacacccagtgtgtaaaa
ggtcctggcaataaaggccctgtttcagtaccactggagaaatggctcac
tcactgtaaactaataggataataatgaatgctgctcctgctgcttggtg
tatgggtaagcagaggaagagttgtaccctctgagggtaccagtaaaaga
agagaaagttgagtgggaacccaagacacatgtaagtcttggtagtcata
agtaggagtgaaattagttgtatattaatttgacactggccattggcata
ttccattacagcatgctacaataaatcaagttttgactaaacttagtgtt
atagctttacatagatccatgtctagcactgaagtcccctatactgccat
gtgactattctcaagaatgtttcaaatcacagcctatctatcttctttaa
gtaggtgaaacagaatgaactgccaggatactggcagacaaagcagatag
gtttgagaaattgcaataagtgattaccaatgaaaatgaagaggatggta
tgtctggaaggatgagcttatctgaggaatatgataatatcagaaagcac
tttgactccatcttctcatagattaaacaataaaacccagtaggaaaaac
aacattaaaggccaatctaatcaacctgttacaaatggcctatctagaaa
gactattcagctaagcagatgtagatgaatcctggaattgttcatgatct
aaaaa

ttgttcaacgaaacccaaaacagtaaaaacagcaaaagcatgtgtggcca
gaatggagaaaaaaaaaaaattggaagcaatcatgaaaaataaactaagg
ttctagtaaggccaaggaccaatgttggtcttgcttttactgagattaca
atgctttatccagctggagtcatgaatccccccatctgtactctttggtt
ggtggtttaatatctgagagctctggggattctggttggttgatattgtt
gttcttcttatggggctgtaaacaccttcagctccttcagtccttgccct
aattcctccattggggtccccatgcccagtccaatggttgactgcatgca
tctgcatctgtattggtcagtctatggcagaacctctccgctggatatgt
agcagaagatggccttattggccatcattaggaggggagtcccttggtac
tggggaggctctaaaactcagggtagggaaattctagggagatgaggcag
gagttgctgagtaggtggaggtgcaccctcatagaggcagggggtgagga
aggggagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_4562031_4563212
seq2: B6Ng01-044N16.b_48_1202 (reverse)

seq1  TTTTTAGATCATAGGACCAAATTTTCAGGATATCATCTAACAATTCTCTG  50
      ||||||||||||  || |||  || |||||| |||||| |||    ||||
seq2  TTTTTAGATCAT--GAACAA--TTCCAGGAT-TCATCT-ACA----TCTG  40

seq1  CTTTAGCTGAAATTAAGTCTTTCTTAAGATTAGGCCATTTGT-ACAGGTA  99
      | |||||||||    |||||||||  ||| |||||||||||| |||||| 
seq2  C-TTAGCTGAA---TAGTCTTTCT--AGA-TAGGCCATTTGTAACAGGT-  82

seq1  TGATTAGTTTTGGCCCTTTATTGTTGTTTTTCCTACTGGGTTTTATTTGT  149
      ||||||| ||  | |||||| |||||||||||||||||||||||| ||||
seq2  TGATTAGATT--GGCCTTTAATGTTGTTTTTCCTACTGGGTTTTA-TTGT  129

seq1  TTAATCCTTATTGAGAAGATGGAGTCAAAGTGCTTTCTGATTATTATTCA  199
      ||||||  || ||||||||||||||||||||||||||||| ||||| |||
seq2  TTAATC--TA-TGAGAAGATGGAGTCAAAGTGCTTTCTGA-TATTA-TCA  174

seq1  TATTCCTCAGATTAAGCTCATCCCTTCCAGACATACCATCCTCTTCATTT  249
      ||||||||||| ||||||||| ||||||||||||||||||||||||||||
seq2  TATTCCTCAGA-TAAGCTCAT-CCTTCCAGACATACCATCCTCTTCATTT  222

seq1  TCATTGGTAATCACTTATTGCAATTTCTCAAACCTATCTGCTTTGTCTGC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGGTAATCACTTATTGCAATTTCTCAAACCTATCTGCTTTGTCTGC  272

seq1  CAGTATCCTGGCAGTTCATTCTGTTTCACCTACTTAAAGAAGATAGATAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATCCTGGCAGTTCATTCTGTTTCACCTACTTAAAGAAGATAGATAG  322

seq1  GCTGTGATTTGAAACATTCTTGAGAATAGTCACATGGCAGTATAGGGGAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGATTTGAAACATTCTTGAGAATAGTCACATGGCAGTATAGGGGAC  372

seq1  TTCAGTGCTAGACATGGATCTATGTAAAGCTATAACACTAAGTTTAGTCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTGCTAGACATGGATCTATGTAAAGCTATAACACTAAGTTTAGTCA  422

seq1  AAACTTGATTTATTGTAGCATGCTGTAATGGAATATGCCAATGGCCAGTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTGATTTATTGTAGCATGCTGTAATGGAATATGCCAATGGCCAGTG  472

seq1  TCAAATTAATATACAACTAATTTCACTCCTACTTATGACTACCAAGACTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATTAATATACAACTAATTTCACTCCTACTTATGACTACCAAGACTT  522

seq1  ACATGTGTCTTGGGTTCCCACTCAACTTTCTCTTCTTTTACTGGTACCCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTGTCTTGGGTTCCCACTCAACTTTCTCTTCTTTTACTGGTACCCT  572

seq1  CAGAGGGTACAACTCTTCCTCTGCTTACCCATACACCAAGCAGCAGGAGC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGGTACAACTCTTCCTCTGCTTACCCATACACCAAGCAGCAGGAGC  622

seq1  AGCATTCATTATTATCCTATTAGTTTACAGTGAGTGAGCCATTTCTCCAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTCATTATTATCCTATTAGTTTACAGTGAGTGAGCCATTTCTCCAG  672

seq1  TGGTACTGAAACAGGGCCTTTATTGCCAGGACCTTTTACACACTGGGTGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTACTGAAACAGGGCCTTTATTGCCAGGACCTTTTACACACTGGGTGT  722

seq1  GCCAGCCTAAGCCATTAGAATCAGCCTGCTCAGAAATCATCATATACATA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCCTAAGCCATTAGAATCAGCCTGCTCAGAAATCATCATATACATA  772

seq1  ATAAGAATTGTACATACTGCCCTTTTATTTTACTTTTATGAATGTTTTGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGAATTGTACATACTGCCCTTTTATTTTACTTTTATGAATGTTTTGC  822

seq1  CAAGAAAGAAATGCTGAAGTTAATGAAATTGAACACTTAACATCTCATTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAAGAAATGCTGAAGTTAATGAAATTGAACACTTAACATCTCATTA  872

seq1  TTTCTAAAGACACCTCACCAGCAGATGCTTTATTTTTGCTAACTACTCTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAAAGACACCTCACCAGCAGATGCTTTATTTTTGCTAACTACTCTG  922

seq1  ATCACTTAACATGTCTTTGAGAACTCCTAAACTCATATTCTTATCAGCAC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTTAACATGTCTTTGAGAACTCCTAAACTCATATTCTTATCAGCAC  972

seq1  ATAATTTTATCCCAATTACTTTTCCTCCAGTTTTGATAAAAGCATCCAAC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTTATCCCAATTACTTTTCCTCCAGTTTTGATAAAAGCATCCAAC  1022

seq1  TTACTTCATTTTCCGAATTTCTGAATCCAAAGCCCTACTCTCCAATCACC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTCATTTTCCGAATTTCTGAATCCAAAGCCCTACTCTCCAATCACC  1072

seq1  AACATGTTCTTGATTTGAATGAAAGCTCACACAGCATAAAAAGTATTTAT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGTTCTTGATTTGAATGAAAGCTCACACAGCATAAAAAGTATTTAT  1122

seq1  GTAAAGCCCATCAAACCCCCAGTCTCTGAATTC  1182
      |||||||||||||||||||||||||||||||||
seq2  GTAAAGCCCATCAAACCCCCAGTCTCTGAATTC  1155


seq1: chr3_4467327_4467891
seq2: B6Ng01-044N16.g_69_633

seq1  GAATTCTTGTTCAACGAAACCCAAAACAGTAAAAACAGCAAAAGCATGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGTTCAACGAAACCCAAAACAGTAAAAACAGCAAAAGCATGTG  50

seq1  TGGCCAGAATGGAGAAAAAAAAAAAATTGGAAGCAATCATGAAAAATAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCAGAATGGAGAAAAAAAAAAAATTGGAAGCAATCATGAAAAATAAA  100

seq1  CTAAGGTTCTAGTAAGGCCAAGGACCAATGTTGGTCTTGCTTTTACTGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGTTCTAGTAAGGCCAAGGACCAATGTTGGTCTTGCTTTTACTGAG  150

seq1  ATTACAATGCTTTATCCAGCTGGAGTCATGAATCCCCCCATCTGTACTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACAATGCTTTATCCAGCTGGAGTCATGAATCCCCCCATCTGTACTCT  200

seq1  TTGGTTGGTGGTTTAATATCTGAGAGCTCTGGGGATTCTGGTTGGTTGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTGGTGGTTTAATATCTGAGAGCTCTGGGGATTCTGGTTGGTTGAT  250

seq1  ATTGTTGTTCTTCTTATGGGGCTGTAAACACCTTCAGCTCCTTCAGTCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTGTTCTTCTTATGGGGCTGTAAACACCTTCAGCTCCTTCAGTCCT  300

seq1  TGCCCTAATTCCTCCATTGGGGTCCCCATGCCCAGTCCAATGGTTGACTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTAATTCCTCCATTGGGGTCCCCATGCCCAGTCCAATGGTTGACTG  350

seq1  CATGCATCTGCATCTGTATTGGTCAGTCTATGGCAGAACCTCTCCGCTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCATCTGCATCTGTATTGGTCAGTCTATGGCAGAACCTCTCCGCTGG  400

seq1  ATATGTAGCAGAAGATGGCCTTATTGGCCATCATTAGGAGGGGAGTCCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTAGCAGAAGATGGCCTTATTGGCCATCATTAGGAGGGGAGTCCCT  450

seq1  TGGTACTGGGGAGGCTCTAAAACTCAGGGTAGGGAAATTCTAGGGAGATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTACTGGGGAGGCTCTAAAACTCAGGGTAGGGAAATTCTAGGGAGATG  500

seq1  AGGCAGGAGTTGCTGAGTAGGTGGAGGTGCACCCTCATAGAGGCAGGGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGAGTTGCTGAGTAGGTGGAGGTGCACCCTCATAGAGGCAGGGGG  550

seq1  TGAGGAAGGGGAGAA  565
      |||||||||||||||
seq2  TGAGGAAGGGGAGAA  565


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