BAC Information

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BAC

Clone NameB6Ng01-045M04
Chromosome3 (Build37)
Map Location 46,964,326 - 46,965,311
singlet/doubletsinglet
Overlap genenone
Upstream geneEG241989, LOC545517, LOC383849
Downstream geneLOC383850, LOC100039426, LOC666202
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-045M04.bB6Ng01-045M04.g
ACCDH871125DH871126
length1,2831,065
definitionDH871125|Mus musculus domesticus DNA, BAC clone: B6Ng01-045M04, 5' end.DH871126|Mus musculus domesticus DNA, BAC clone: B6Ng01-045M04, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctcaggatttgttgttatgtctccctttccatttctaattttga
aaattaggatactgtccctgtgccctcttgtgagtctggctaagggttta
tctgtctcgttgattttctcaaagagccagcttttggcttggttgatact
ttgaatagttctttttgtttccacttggttgattttgcccctgagtttga
ttatttcttcctgtctactcctcttgggtgaacttgcttcctttagttct
agagcttttaggtgtgctgtcaagctgctagtgtatgctctctaaagttt
ctttttgagtcactcagagctgtgatttttcctcttaggaatgctttcat
tgtgtcccataattttggctaagttgtggcttcattttcattaaactgca
ttaagagttttgatcttaccaggtaaatgggtgttgtgtttgctgaccat
ggggtgggctgttgttgtgtgggcctagcagcagaaatttgacaagagaa
tcaggagctatggccaaaagagtcggccaagttgaggtcacccagctgga
gccatgaggcctgcttgtgctggcattagtgaggaaacatgctggtttgc
ttttttgatatttccagcaacaaactaaggcattcttttttctttttttt
ttttaagattcatttgagattgtcacttttggatttcaatccatactttt
gtggctccatcatttcttatctgatataaaacaggacataaaaatagagc
cagcttgtgttcatcttaggatggacacacaggaaagagataccaataaa
aaattttagaacatgatacagttctagtggtatccccaattaacctcccc
tttaaagaaatatgttatctaaagtttgtagaattttctagtaaacacac
tagttgataatagagcaatcagtgagtatgggaaatctttcatgttcagt
cataatgagaccaaagctatttcctacaaagtattgaaataatcaaacat
atattcatttggacgttttgtagactggcatgaaccaccccaataatttg
gcaggaacacactggcattcaggaatatataaggaatctactggtgcatg
tttgggtcataagcctaactaagtaattgcactctctattcctgcttcac
aagaagagttcgttccatgatggaggccgattattctactcgatacgcac
tcacctatacacacacttgtatccagtgaatgttgcaacatggaattcaa
gagaggttagcaaaagcattaccctcgacgaat
gaattctctggtgttaatgttcaagctgtctctgcagcttgatcctcctg
tgattcttttagcctctgtcagcactcctgggagtccaactctctcctga
gttccagtggtcagagcactctctacaggcaacctctcctctttcagggc
aggtgtccagcagtctggagctctgatccacctcctgagttctggggtca
gaactctccctgttggcctactctcctctggcaaggaatgtgcccaaggg
tctagtctcagctctgcctcctggttgaggatgaaggcccaatgggaccc
tgaccaagaagctttgttgcttctatagaccatgtgctctcaggtgatca
agaggtcctgggtgtgctaggggtcctgtggcgtgaagagtcctctggtg
ccctagatccctttggcccagttcatgcagaagatgtccgggctggcccc
aacctgaatggattccagcctctggtcaggcaggattcctttgtccctgt
tcctgctggtacaagaaagaccctctgcaattctttgaagctgatgttgc
gttccactcacccatcatcccgaggtgacccagatccctatgccacagtt
tttgagactgttttttgttgttgttgttgtttgtttgtttgtttgtttga
ctgattgacattttgttttgtttttaccaatttcatcattttttcttttt
cttttcctttctttttttctattaaaaaacggataagtaaataaatggga
tttatgtttctagagttctttccttgctttcttgaacaaatgggggttat
atgtcttctcaaaacaaacaaacaaacaaacatacaacattacaaaaaaa
cagtacttcattcagcttgtgtttcagacaggttgcaagttaggatttgc
attttacttattagtaaatattttggtattgaccgacttgtagttcattg
acaaggcatgtagctctgtgaacgagccttttacttagaagaagaaatgc
ctcatttccttgggcacttgagggtgggaagctttcttaaatacacctta
tggtggatcacagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_46964326_46965311
seq2: B6Ng01-045M04.g_146_1132

seq1  TGGGAGTCCAACTCTCTCCTGAGTTCCAGTGGTCAGAGCACTCTCTACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGTCCAACTCTCTCCTGAGTTCCAGTGGTCAGAGCACTCTCTACAG  50

seq1  GCAACCTCTCCTCTTTCAGGGCAGGTGTCCAGCAGTCTGGAGCTCTGATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACCTCTCCTCTTTCAGGGCAGGTGTCCAGCAGTCTGGAGCTCTGATC  100

seq1  CACCTCCTGAGTTCTGGGGTCAGAACTCTCCCTGTTGGCCTACTCTCCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCCTGAGTTCTGGGGTCAGAACTCTCCCTGTTGGCCTACTCTCCTC  150

seq1  TGGCAAGGAATGTGCCCAAGGGTCTAGTCTCAGCTCTGCCTCCTGGTTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAAGGAATGTGCCCAAGGGTCTAGTCTCAGCTCTGCCTCCTGGTTGA  200

seq1  GGATGAAGGCCCAATGGGACCCTGACCAAGAAGCTTTGTTGCTTCTATAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGAAGGCCCAATGGGACCCTGACCAAGAAGCTTTGTTGCTTCTATAG  250

seq1  ACCATGTGCTCTCAGGTGATCAAGAGGTCCTGGGTGTGCTAGGGGTCCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGTGCTCTCAGGTGATCAAGAGGTCCTGGGTGTGCTAGGGGTCCTG  300

seq1  TGGCGTGAAGAGTCCTCTGGTGCCCTAGATCCCTTTGGCCCAGTTCATGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCGTGAAGAGTCCTCTGGTGCCCTAGATCCCTTTGGCCCAGTTCATGC  350

seq1  AGAAGATGTCCGGGCTGGCCCCAACCTGAATGGATTCCAGCCTCTGGTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGATGTCCGGGCTGGCCCCAACCTGAATGGATTCCAGCCTCTGGTCA  400

seq1  GGCAGGATTCCTTTGTCCCTGTTCCTGCTGGTACAAGAAAGACCCTCTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGATTCCTTTGTCCCTGTTCCTGCTGGTACAAGAAAGACCCTCTGC  450

seq1  AATTCTTTGAAGCTGATGTTGCGTTCCACTCACCCATCATCCCGAGGTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTTGAAGCTGATGTTGCGTTCCACTCACCCATCATCCCGAGGTGA  500

seq1  CCCAGATCCCTATGCCACAGTTTTTGAGACTGTTTTTTGTTGTTGTTGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGATCCCTATGCCACAGTTTTTGAGACTGTTTTTTGTTGTTGTTGTT  550

seq1  GTTTGTTTGTTTGTTTGTTTGACTGATTGACATTTTGTTTTGTTTTTACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTTGTTTGTTTGTTTGACTGATTGACATTTTGTTTTGTTTTTACC  600

seq1  AA-TTCATCATTTTTTCTTTTTCTTTTCCTTTC-TTTTTTCTATTAAAAA  648
      || |||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AATTTCATCATTTTTTCTTTTTCTTTTCCTTTCTTTTTTTCTATTAAAAA  650

seq1  ACGGATAAGTAAATAAAT-GGATTTATG-TTCTAGAGTTC-TTCCTTGCT  695
      |||||||||||||||||| ||||||||| ||||||||||| |||||||||
seq2  ACGGATAAGTAAATAAATGGGATTTATGTTTCTAGAGTTCTTTCCTTGCT  700

seq1  TTCTTG-ACAAAT-GGGGTTATATGTCTTCTCAAAACAAACAAACAAACA  743
      |||||| |||||| ||||||||||||||||||||||||||||||||||||
seq2  TTCTTGAACAAATGGGGGTTATATGTCTTCTCAAAACAAACAAACAAACA  750

seq1  AACATACAAACATAC-AAAAAACAGTACTTCA-TCAGC-TGTGTTTCAGA  790
      |||||||||   ||| |||||||||||||||| ||||| |||||||||||
seq2  AACATACAACATTACAAAAAAACAGTACTTCATTCAGCTTGTGTTTCAGA  800

seq1  CAGGTTGCAAGTTAAGAATTTGCATTTTACTTATTAGTAAAATATTTTGG  840
      ||||||||||||| || ||||||||||||||||||||| |||||||||||
seq2  CAGGTTGCAAGTT-AGGATTTGCATTTTACTTATTAGT-AAATATTTTGG  848

seq1  TATTGACCGACTTGTTAGTTCATTGACAAGGCATGTAGCTCTGTGACAGA  890
      |||||||||||||| |||||||||||||||||||||||||||||||  ||
seq2  TATTGACCGACTTG-TAGTTCATTGACAAGGCATGTAGCTCTGTGAACGA  897

seq1  GCCTTTTACTTAAAGAAGAAGAAATGCCTCAGTTCTATGGGCACCTGGAG  940
      |||||||||||  |||||||||||||||||| |||  ||||||| ||  |
seq2  GCCTTTTACTT--AGAAGAAGAAATGCCTCATTTCCTTGGGCACTTGAGG  945

seq1  GTGGGAGAGGCTTTCCTACAATACA-CTTATGTTGGATCCAACAGAA  986
      ||||  || |||||| || |||||| |||||| ||||||  ||||||
seq2  GTGG--GAAGCTTTCTTA-AATACACCTTATGGTGGATC--ACAGAA  987