BAC Information

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BAC

Clone NameB6Ng01-046P24
Chromosome3 (Build37)
Map Location 79,738,851 - 79,863,317
singlet/doubletdoublet
Overlap gene1110032E23Rik
Upstream geneLOC100041716, LOC100041725, LOC100041766, Rapgef2, LOC100041741, LOC100041793, LOC667613, Ppid, Etfdh, 4930579G24Rik, Rxfp1, Tmem144
Downstream geneEG626797, Gria2, Glrb, EG626841, Pdgfc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-046P24.bB6Ng01-046P24.g
ACCDH871987DH871988
length888579
definitionDH871987|Mus musculus domesticus DNA, BAC clone: B6Ng01-046P24, 5' end.DH871988|Mus musculus domesticus DNA, BAC clone: B6Ng01-046P24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,738,851 - 79,739,731)(79,862,743 - 79,863,317)
sequence
gaattcattcaacattcatggctttcattatagtttggatcataattctc
ccctatgttctgtctcctgtgttaaaggctcgtggcactgctgggagata
ggtattggaatctttaagagggacagaagtaggtagatctctgagtttaa
gtccagcttggtctacagagcaagtttcagggtagcaagggctacacaga
gtaatactgcctgaagcagcagcagcaacaacaacaaaccaaaaaaaaaa
aaaaaaaacaacaacaacaaaaagaaataaaaaaaataagttcatcctta
agagttaaaatctaaatgtttattctagtatagtcaaaaaatgtttcatt
tcttcatgagtgttaatctagttgaacatgaacatatgatggtgtctatg
aaaactgacctctagccagtttaagcttggctcaccgttttgcagacttt
agtccctagctggctgccctcatagagtttggacttctggaaaggcagtg
gtacagggaagagtaagctaagaatcaaagaagagcaatgagggtcttca
tcccttttctgtggcctaaatggatcacttaagaccacctactgagtctc
atctttcaaggtttctaccacttcaacagtgtaagtctgggaactaaatt
tctgctctatgggccttttgggggaagcatttagatctaaaggtaaagac
tgtatgccctattaagtgtgtcttaccctgtggcacagggccacatacat
ttttaggatagctgtgacttgtggtccaacatgtttgcaaataacaatgt
catgcttcagcatcatatctttggacagccctggcttgttagggttgtgt
acagaatttcattaattcttctactaacggcacaacat
gaattcctaatttctgatgccatttattttgaaatttttaacaactatgt
aagaataatcacagtttagcttgtttttaattattttctttagtaatagt
tagactcaatatggtataactgagcttaaagatatgggaaaactgtgact
acattaagtgtcttatttattctatccctgaaatactattccagattata
cccccatgactctttcaataacttgaaatcatgtttctctttttgacaat
ttcattggttctgttgaatgattctaaatttcacacctggagacagtggg
attaagtaaagctaatgttttatatctctgcttcaagtctgcaaatattg
atttttttgtaattatttaatttggataatgatttaattaattacatatt
acataggcttgaactggggaagccagtcactagagggcagcaaacctcat
agaaaagacatgaattcaaatgctgattcttaattcaaggtaataaaaaa
tacatcgcatgacctagagagggcaaagcaccttatgcttttcccaagtg
tctctgtatgtcataaaagtcttcggctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_79738851_79739731
seq2: B6Ng01-046P24.b_34_921

seq1  GAATTCATTCAACATTCATGGCTTTCATTATAGTTTGGATCATAATTCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCAACATTCATGGCTTTCATTATAGTTTGGATCATAATTCTC  50

seq1  CCCTATGTTCTGTCTCCTGTGTTAAAGGCTCGTGGCACTGCTGGGAGATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTATGTTCTGTCTCCTGTGTTAAAGGCTCGTGGCACTGCTGGGAGATA  100

seq1  GGTATTGGAATCTTTAAGAGGGACAGAAGTAGGTAGATCTCTGAGTTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTGGAATCTTTAAGAGGGACAGAAGTAGGTAGATCTCTGAGTTTAA  150

seq1  GTCCAGCTTGGTCTACAGAGCAAGTTTCAGGGTAGCAAGGGCTACACAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGCTTGGTCTACAGAGCAAGTTTCAGGGTAGCAAGGGCTACACAGA  200

seq1  GTAATACTGCCTGAAGCAGCAGCAGCAACAACAACAAACCAAAAAAAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATACTGCCTGAAGCAGCAGCAGCAACAACAACAAACCAAAAAAAAAA  250

seq1  AAAAAAAACAACAACAACAAAAAGAAATAAAAAAAATAAGTTCATCCTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAACAACAACAACAAAAAGAAATAAAAAAAATAAGTTCATCCTTA  300

seq1  AGAGTTAAAATCTAAATGTTTATTCTAGTATAGTCAAAAAATGTTTCATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTAAAATCTAAATGTTTATTCTAGTATAGTCAAAAAATGTTTCATT  350

seq1  TCTTCATGAGTGTTAATCTAGTTGAACATGAACATATGATGGTGTCTATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCATGAGTGTTAATCTAGTTGAACATGAACATATGATGGTGTCTATG  400

seq1  AAAACTGACCTCTAGCCAGTTTAAGCTTGGCTCACCGTTTTGCAGACTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTGACCTCTAGCCAGTTTAAGCTTGGCTCACCGTTTTGCAGACTTT  450

seq1  AGTCCCTAGCTGGCTGCCCTCATAGAGTTTGGACTTCTGGAAAGGCAGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCTAGCTGGCTGCCCTCATAGAGTTTGGACTTCTGGAAAGGCAGTG  500

seq1  GTACAGGGAAGAGTAAGCTAAGAATCAAAGAAGAGCAATGAGGGTCTTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGGGAAGAGTAAGCTAAGAATCAAAGAAGAGCAATGAGGGTCTTCA  550

seq1  TCCC-TTTCTGTGGCCTAAATGGATCACTTAAGACCACCTACTGAGTCTC  599
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTTTCTGTGGCCTAAATGGATCACTTAAGACCACCTACTGAGTCTC  600

seq1  ATCTTTCAAGGTTTCTACCACTTCAACAGTGTAAGTCTGGGAACTAAATT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTCAAGGTTTCTACCACTTCAACAGTGTAAGTCTGGGAACTAAATT  650

seq1  TCTGCTCTATGGGCC-TTTGGGGGAAGCATTTAGATCTAAA-GTAAAGAC  697
      ||||||||||||||| ||||||||||||||||||||||||| ||||||||
seq2  TCTGCTCTATGGGCCTTTTGGGGGAAGCATTTAGATCTAAAGGTAAAGAC  700

seq1  TGTATGCCCTATTAAGTGTGTC-TAACCTGTGGCACAGGGCCACATACA-  745
      |||||||||||||||||||||| || ||||||||||||||||||||||| 
seq2  TGTATGCCCTATTAAGTGTGTCTTACCCTGTGGCACAGGGCCACATACAT  750

seq1  TTTTAGGATAGCTGTGAC-TGTGGTCCAACATGTTTGCAAATAACAATGT  794
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TTTTAGGATAGCTGTGACTTGTGGTCCAACATGTTTGCAAATAACAATGT  800

seq1  CATGCTTCAGCATCATAATCTTGGACAGCCCT-GCCTGTTAGGGCTGTGT  843
      |||||||||||||||||   |||||||||||| || |||||||| |||||
seq2  CATGCTTCAGCATCATATCTTTGGACAGCCCTGGCTTGTTAGGGTTGTGT  850

seq1  ACAGTATTTCATTAATCTTTCTACTAACTGCACAACAT  881
      |||| |||||||||||  |||||||||| |||||||||
seq2  ACAGAATTTCATTAATTCTTCTACTAACGGCACAACAT  888

seq1: chr3_79862743_79863317
seq2: B6Ng01-046P24.g_71_649 (reverse)

seq1  GAGCCG-AGAC-TTTATGACATACAGAGACACTTGGG-AAAGCAT-AGGT  46
      |||||| |||| ||||||||||||||||||||||||| ||||||| ||||
seq2  GAGCCGAAGACTTTTATGACATACAGAGACACTTGGGAAAAGCATAAGGT  50

seq1  GCTTTGCCCTCTCTAGGTCATGCGATGTATTTTTTATTACCTTGAATTAA  96
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGCCCTCTCTAGGTCATGCGATGTATTTTTTATTACCTTGAATTAA  100

seq1  GAATCAGCATTTGAATTCATGTCTTTTCTCTGAGGTTTGCTGCCCTCTAG  146
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GAATCAGCATTTGAATTCATGTCTTTTCTATGAGGTTTGCTGCCCTCTAG  150

seq1  TGACTGGCTTCCCCAGTTCAAGCCTATGTAATATGTAATTAATTAAATCA  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGGCTTCCCCAGTTCAAGCCTATGTAATATGTAATTAATTAAATCA  200

seq1  TTATCCAAATTAAATAATTACAAAAAAATCAATATTTGCAGACTTGAAGC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCAAATTAAATAATTACAAAAAAATCAATATTTGCAGACTTGAAGC  250

seq1  AGAGATATAAAACATTAGCTTTACTTAATCCCACTGTCTCCAGGTGTGAA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATATAAAACATTAGCTTTACTTAATCCCACTGTCTCCAGGTGTGAA  300

seq1  ATTTAGAATCATTCAACAGAACCAATGAAATTGTCAAAAAGAGAAACATG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGAATCATTCAACAGAACCAATGAAATTGTCAAAAAGAGAAACATG  350

seq1  ATTTCAAGTTATTGAAAGAGTCATGGGGGTATAATCTGGAATAGTATTTC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAAGTTATTGAAAGAGTCATGGGGGTATAATCTGGAATAGTATTTC  400

seq1  AGGGATAGAATAAATAAGACACTTAATGTAGTCACAGTTTTCCCATATCT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATAGAATAAATAAGACACTTAATGTAGTCACAGTTTTCCCATATCT  450

seq1  TTAAGCTCAGTTATACCATATTGAGTCTAACTATTACTAAAGAAAATAAT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCTCAGTTATACCATATTGAGTCTAACTATTACTAAAGAAAATAAT  500

seq1  TAAAAACAAGCTAAACTGTGATTATTCTTACATAGTTGTTAAAAATTTCA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAACAAGCTAAACTGTGATTATTCTTACATAGTTGTTAAAAATTTCA  550

seq1  AAATAAATGGCATCAGAAATTAGGAATTC  575
      |||||||||||||||||||||||||||||
seq2  AAATAAATGGCATCAGAAATTAGGAATTC  579