BAC Information

Click to search

BAC

Clone NameB6Ng01-047G16
Chromosome3 (Build37)
Map Location 146,237,140 - 146,378,008
singlet/doubletdoublet
Overlap geneDnase2b, Uox, 4930503B20Rik, Gm1652, LOC670100
Upstream gene2410019A14Rik, Cyr61, Ddah1, LOC100040331, Bcl10, 2410004B18Rik, Syde2, Wdr63, Mcoln3, Mcoln2, Edg7, Ssx2ip, Ctbs, Spata1, Gng5, Bxdc5, LOC100040473
Downstream genePrkacb, LOC100040540, Ttll7, Ppia-ps3_1528.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-047G16.bB6Ng01-047G16.g
ACCDH872284DH872285
length133980
definitionDH872284|Mus musculus domesticus DNA, BAC clone: B6Ng01-047G16, 5' end.DH872285|Mus musculus domesticus DNA, BAC clone: B6Ng01-047G16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(146,237,140 - 146,237,272)(146,377,491 - 146,378,008)
sequence
gaattcaggtaagtgattgattggtctcattgggtttaatactgtggcca
ctcatatcttggtagccacatatttcggagcaaaattattcactttgtgg
tcaggaggcaagagtggcagggagggaggaagg
gaattcatgggtcattgctcttggggtgtcaaggtggttcagtgggtaaa
agtaattattcctaagtctgttgagctattgtagatccccgagactctcg
tggtaggagataacaacgtcctcaagttgtcttgtgactctacatactcg
tgaacacccatatacattcattcatgcacacatactcaattaatttttga
acatatttctctattgtgggttaacttggaatgcctgtagaaagaagcct
ttgttaaagggcaggggtaatagggcctgttatggaggaagaaaggcaaa
tcatgtgttaggaagatttcagtggggtaaggactgggagacaaggaaag
gtggggtgaagaaaaggcaaagcaacacaaaaggtgccagaaagatccat
gtgaaacctatgccttcataagcttccgaagaaatgtatttaagactttg
aatggaattaccttgtgctcctcctgaaagacatagatagcaaacaaaag
tcccagcaccagatgtgtaatatccccatctgcattattgagcaaaggaa
tccccaaaatcttaaaaaaaacaatacaagaatttgccattgctcttggt
tgcccaccagaacacgacaataagaccctatcactaaagatgccatgcgt
ttttgtcacgggacacggaagcttccaccccaccgtttaggttgcacaga
gtcagagggtgccatgcaaggacctgggaaagaagccatcaacaatctta
cctggctgtgaaccaagcaagctacaacaaagaccagcctggcaagaaac
acacacacacacacacacacacacaccaatgtagccgtggcatggataat
gtgggagtaaccaactacttcctaactggatttaatgttggctctcctca
tagaactcatgcctggtgttatccgccatggctgaaacctcatggctggg
cttctcaagtcctgaggagaagctgtcatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_146237140_146237272
seq2: B6Ng01-047G16.b_41_173

seq1  GAATTCAGGTAAGTGATTGATTGGTCTCATTGGGTTTAATACTGTGGCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGTAAGTGATTGATTGGTCTCATTGGGTTTAATACTGTGGCCA  50

seq1  CTCATATCTTGGTAGCCACATATTTCGGAGCAAAATTATTCACTTTGTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATATCTTGGTAGCCACATATTTCGGAGCAAAATTATTCACTTTGTGG  100

seq1  TCAGGAGGCAAGAGTGGCAGGGAGGGAGGAAGG  133
      |||||||||||||||||||||||||||||||||
seq2  TCAGGAGGCAAGAGTGGCAGGGAGGGAGGAAGG  133

seq1: chr3_146377491_146378008
seq2: B6Ng01-047G16.g_65_582 (reverse)

seq1  ACACATCTGGTGCTGGGACTTTTGTTTGCTATCTATGTCTTTCAGGAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATCTGGTGCTGGGACTTTTGTTTGCTATCTATGTCTTTCAGGAGGA  50

seq1  GCACAAGGTAATTCCATTCAAAGTCTTAAATACATTTCTTCGGAAGCTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAAGGTAATTCCATTCAAAGTCTTAAATACATTTCTTCGGAAGCTTA  100

seq1  TGAAGGCATAGGTTTCACATGGATCTTTCTGGCACCTTTTGTGTTGCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGCATAGGTTTCACATGGATCTTTCTGGCACCTTTTGTGTTGCTTT  150

seq1  GCCTTTTCTTCACCCCACCTTTCCTTGTCTCCCAGTCCTTACCCCACTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTTCTTCACCCCACCTTTCCTTGTCTCCCAGTCCTTACCCCACTGA  200

seq1  AATCTTCCTAACACATGATTTGCCTTTCTTCCTCCATAACAGGCCCTATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTCCTAACACATGATTTGCCTTTCTTCCTCCATAACAGGCCCTATT  250

seq1  ACCCCTGCCCTTTAACAAAGGCTTCTTTCTACAGGCATTCCAAGTTAACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCTGCCCTTTAACAAAGGCTTCTTTCTACAGGCATTCCAAGTTAACC  300

seq1  CACAATAGAGAAATATGTTCAAAAATTAATTGAGTATGTGTGCATGAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATAGAGAAATATGTTCAAAAATTAATTGAGTATGTGTGCATGAATG  350

seq1  AATGTATATGGGTGTTCACGAGTATGTAGAGTCACAAGACAACTTGAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTATATGGGTGTTCACGAGTATGTAGAGTCACAAGACAACTTGAGGA  400

seq1  CGTTGTTATCTCCTACCACGAGAGTCTCGGGGATCTACAATAGCTCAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTGTTATCTCCTACCACGAGAGTCTCGGGGATCTACAATAGCTCAACA  450

seq1  GACTTAGGAATAATTACTTTTACCCACTGAACCACCTTGACACCCCAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTAGGAATAATTACTTTTACCCACTGAACCACCTTGACACCCCAAGA  500

seq1  GCAATGACCCATGAATTC  518
      ||||||||||||||||||
seq2  GCAATGACCCATGAATTC  518