BAC Information

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BAC

Clone NameB6Ng01-047L16
ChromosomeX (Build37)3 (Build37)
Map Location 107,329,339 - 107,329,8723,904,722 - 3,905,894
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSh3bgrl, EG622976, LOC100042831, LOC213474, LOC245573
Downstream geneEG634340, LOC668530, LOC100043316, Pou3f4, Cylc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-047L16.bB6Ng01-047L16.g
ACCDH872511DH872512
length9831,132
definitionDH872511|Mus musculus domesticus DNA, BAC clone: B6Ng01-047L16, 5' end.DH872512|Mus musculus domesticus DNA, BAC clone: B6Ng01-047L16, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(107,329,339 - 107,329,872)(3,904,722 - 3,905,894)
sequence
gaattcagtccattgatattaagagatattaaggaaaagtcattgttaat
tcttgttattattgttgttagagttggaattctgttcatgtgggtagctt
ctttaggtttgttgaaagattactttcttgctttttcttgaacttagttt
ccttcattgtgtttaagttttccctttatcatccttttaagggctttcat
agatttgtttttgtcatggaataccttagtttctccatctatagtgattg
agagttttgttgggtataatagcctgggctggcatttgtgttctcttggg
gtctgtatgacatctgcccaggattttctggctttcacagtctctgggca
gaaatctggtgtaattctaataggcatgcctttatatgttacttgacttt
tttcccttactgcttttaatattctatttttatttagtgcatttgttgtt
ctgattattatgtgtcaggaggaatttcttttctgaaccagtctatttgg
agctctgtagatttcttgtatgttcatgcgcttctctttctctaggtatg
ggaagtgttcttctataattttgttgaagatatttactggccctttaatt
tggaaatcttccttctagactatacctattatccttagctttagtcttct
caccgtgtcctggatttcctggatgttttgggttaggatcttttttgcat
ttcacattttttttattgttatgtcaatgttttctatggtatcttctgga
cccgagattctcacttctatctcttgtattctgttggttatgattgcatt
cttgtcccctgtcttctttcctagatttcctattttcaaagtggtctcac
ttcatgatttatttaatgtttctacttccatttttagatcctagatggtt
ttgttcaattctttcacctgattgggtgtgtctctgtatttcttcaaggg
aattactatttccttcctatactcctccatcat
gaattctatgtggcttaccagatgtgtgccagttaactgagggcaaaaga
atcccaaaagtccttcaggagacaagtaagaagaagggtaagggatttat
tggataaacattaggatcaggtgattttaataaggacttagaaagaattt
tccaatctgagcattttctcttcctcctacccacagaggccaataacttg
ggcatcaaaaatattctctttcttgataacaattctcatccacttatcca
ggaacacctatctggatttcacatttctcttatatttcttcttgaaccat
gactaaattcttaatgagaattattaaagaagggtattagcaacaaagag
taacatatatagtgcttcatttgatgacaaattagactttcttaagacat
gtgtgataaagcaaaaggaaaacttctttttacttaaacaatgaagacgt
ttccaggtgaatttacattgaagcttggaactgaaatatgagtaatgatt
aactaggtgaaaaacacttaagaatagatgattgggttgaagaaattaca
aatactgaactgaagaaagagctgagaagttattttgacaccctcaacat
tgggtatggcttgcagtctgtaatccttagtggagtcaagtgaggaatac
atgcaggcacacaattggggccaggagactttactactttttgttaaaga
taaattctttattttatgctggctcaagagaaggagccagataattccgg
tcagcaccatccccagggcacaaactcagcagattgtcccacggtcccca
gaggattctccatagtgcaggcacccagggatcactggtgagcagaacac
atctgttcctaataaaaaaaaaaaaaccatgaggggttcttggggaaggt
ataggagactttcaggatacattgtaatgtaatgaagaacatatctattt
taaaaagaaaaaaattctctatttcagaaatcaatagatctaactttcat
agaaagcaagtatactgggtgtttcaatgtatgaaaatgtgaggaatctg
gaaatagaacagaaagaattgggaaggcaagtgagaggttttgatgatga
tggcttactctgatgaaacactggatgaacaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_107329339_107329872
seq2: B6Ng01-047L16.b_45_545 (reverse)

seq1  TCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCA  50
      ||||||||||||||  |||||||||||||||||| |||||||||||||||
seq2  TCCAAATAGACTGGTTCAGAAAAGAAATTCCTCCTGACACATAATAATCA  50

seq1  GAACAACAAAGGCACTAAATAAAGATAGGATATTAAAAGCAGTAAGGGAA  100
      |||||||||| |||||||||||| |||| |||||||||||||||||||||
seq2  GAACAACAAATGCACTAAATAAAAATAGAATATTAAAAGCAGTAAGGGAA  100

seq1  AAAGGTCAAGTAACATATAAAGGCAGGCCTATCAGAATTACACCAGACTT  150
      ||| ||||||||||||||||||||| |||||| |||||||||||||| ||
seq2  AAAAGTCAAGTAACATATAAAGGCATGCCTATTAGAATTACACCAGATTT  150

seq1  TTCACCAGAGACTATGAAAGCCAGATGATCCTGGACAGATGCTATACAGA  200
       |  ||||||||| |||||||||||  ||||||| ||||||  |||||||
seq2  CTGCCCAGAGACTGTGAAAGCCAGAAAATCCTGGGCAGATGTCATACAGA  200

seq1  CACTAAGAGAACACAAATGCCAGCCCAGGCTACTATACCCAGCCCAACTT  250
      | | |||||||||||||||||||||||||||| |||||||| |  |||| 
seq2  CCCCAAGAGAACACAAATGCCAGCCCAGGCTATTATACCCAACAAAACTC  250

seq1  TCAATAACCATAGATGGAAAAACCAAAGAATTCCTTGACAAACCCAAATC  300
      ||||| || ||||||||| |||| || | ||||| |||||||  ||||||
seq2  TCAATCACTATAGATGGAGAAACTAAGGTATTCCATGACAAAAACAAATC  300

seq1  CACATATTATCTTTCCCCAAATCCAGCCTTTCAAAGGATAATAACAAAAT  350
          ||| |               |||| || ||||||| ||        
seq2  ----TATGA--------------AAGCCCTTAAAAGGATGAT--------  324

seq1  AATAAAAAATAAAAAAATAAAAACCAAGGATGGAAACCACACCCTAGAAA  400
            |||   |||| | |||  ||| || |||||| |    | |||||
seq2  ------AAAGGGAAAACTTAAACACAATGAAGGAAACTAAGTTCAAGAAA  368

seq1  AAGCAAGAAAGTAATCCTTCAACAAACCTAGAAGAAGAAGGCCACAAGAA  450
      |||||||||||||||| ||||||||||||| ||||||    ||||| |||
seq2  AAGCAAGAAAGTAATCTTTCAACAAACCTA-AAGAAGCTACCCACATGAA  417

seq1  AATAATGCCAACTCTAACAACAGAGATAATAGAAAGCAACAATTACTTTT  500
       | ||| |||||||||||||||   |||| |  ||  |||||| ||||||
seq2  CAGAATTCCAACTCTAACAACAATAATAACAAGAATTAACAATGACTTTT  467

seq1  CCTTAATATCTCTTAATATCAATGGACTCAATTC  534
      |||||||||||||||||||||||||||| |||||
seq2  CCTTAATATCTCTTAATATCAATGGACTGAATTC  501

seq1: chr3_3904722_3905894
seq2: B6Ng01-047L16.g_67_1198

seq1  GAATTCTATGTGGCTTACCAGATGTGTGCCAGTTAACTGAGGGCAAAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATGTGGCTTACCAGATGTGTGCCAGTTAACTGAGGGCAAAAGA  50

seq1  ATCCCAAAAGTCCTTCAGGAGACAAGTAAGAAGAAGGGTAAGGGATTTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCAAAAGTCCTTCAGGAGACAAGTAAGAAGAAGGGTAAGGGATTTAT  100

seq1  TGGATAAACATTAGGATCAGGTGATTTTAATAAGGACTTAGAAAGAATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATAAACATTAGGATCAGGTGATTTTAATAAGGACTTAGAAAGAATTT  150

seq1  TCCAATCTGAGCATTTTCTCTTCCTCCTACCCACAGAGGCCAATAACTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATCTGAGCATTTTCTCTTCCTCCTACCCACAGAGGCCAATAACTTG  200

seq1  GGCATCAAAAATATTCTCTTTCTTGATAACAATTCTCATCCACTTATCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATCAAAAATATTCTCTTTCTTGATAACAATTCTCATCCACTTATCCA  250

seq1  GGAACACCTATCTGGATTTCACATTTCTCTTATATTTCTTCTTGAACCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACACCTATCTGGATTTCACATTTCTCTTATATTTCTTCTTGAACCAT  300

seq1  GACTAAATTCTTAATGAGAATTATTAAAGAAGGGTATTAGCAACAAAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAAATTCTTAATGAGAATTATTAAAGAAGGGTATTAGCAACAAAGAG  350

seq1  TAACATATATAGTGCTTCATTTGATGACAAATTAGACTTTCTTAAGACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATATATAGTGCTTCATTTGATGACAAATTAGACTTTCTTAAGACAT  400

seq1  GTGTGATAAAGCAAAAGGAAAACTTCTTTTTACTTAAACAATGAAGACGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGATAAAGCAAAAGGAAAACTTCTTTTTACTTAAACAATGAAGACGT  450

seq1  TTCCAGGTGAATTTACATTGAAGCTTGGAACTGAAATATGAGTAATGATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGGTGAATTTACATTGAAGCTTGGAACTGAAATATGAGTAATGATT  500

seq1  AACTAGGTGAAAAACACTTAAGAATAGATGATTGGGTTGAAGAAATTACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGGTGAAAAACACTTAAGAATAGATGATTGGGTTGAAGAAATTACA  550

seq1  AATACTGAACTGAAGAAAGAGCTGAGAAGTTATTTTGACACCCTCAACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTGAACTGAAGAAAGAGCTGAGAAGTTATTTTGACACCCTCAACAT  600

seq1  TGGGTATGGCTTGCAGTCTGTAATCCTTAGTGGAGTCAAGTGAGGAATAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTATGGCTTGCAGTCTGTAATCCTTAGTGGAGTCAAGTGAGGAATAC  650

seq1  ATGCAGGCACACAATTGGGGCCAGGAGACTTTACTACTTTTTGTTAAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGGCACACAATTGGGGCCAGGAGACTTTACTACTTTTTGTTAAAGA  700

seq1  TAAATTCTTTATTTTATGCTGGCTCAAGAGAAGGAGCCAGATAATTCCGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTCTTTATTTTATGCTGGCTCAAGAGAAGGAGCCAGATAATTCCGG  750

seq1  TCAGCACCATCCCCAGGGCACAAACTCAGCAGATTGTCCCACGGTCCCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCACCATCCCCAGGGCACAAACTCAGCAGATTGTCCCACGGTCCCCA  800

seq1  GAGGATTCTCCATAGTGCAGGCACCCAGGGATCACTGGTGAGCAGAACAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATTCTCCATAGTGCAGGCACCCAGGGATCACTGGTGAGCAGAACAC  850

seq1  ATCTGTTCCTAAAAAAAAAAAAAAAAAAAAAACCATGAGGGGGTTCTTGG  900
      ||||||||||      || ||||||||||||||||||| |||||||||||
seq2  ATCTGTTCCT------AATAAAAAAAAAAAAACCATGA-GGGGTTCTTGG  893

seq1  GGGAAGGGTATAGGAGACTTTCAGGATAACATTTGTAATGTAAATGAAGA  950
      ||  | ||||||||||||||||||||| ||| ||||||||| ||||||||
seq2  GG--AAGGTATAGGAGACTTTCAGGAT-ACA-TTGTAATGT-AATGAAGA  938

seq1  ACATATCTAATTTTAAAAAAGAAAAAAAATTCTCTATTTCAGAAATTCAA  1000
      |||||||| ||||||||||   ||||||||||||||||||||||||   |
seq2  ACATATCT-ATTTTAAAAA--GAAAAAAATTCTCTATTTCAGAAAT--CA  983

seq1  ATAAGGATCTAAACTTTCATAGAAAGCAAGTATACTGGGTGTTTTCAAAT  1050
      |||  ||||| |||||||||||||||||||||||||||||||||   |||
seq2  ATA--GATCT-AACTTTCATAGAAAGCAAGTATACTGGGTGTTT--CAAT  1028

seq1  GTATTGAGATGTGAGGGATACTTGAAATAGAACAAGAAAGAAATTGGGAG  1100
      ||||  | |||||||| || || |||||||||| |||||| ||||||  |
seq2  GTATGAAAATGTGAGGAAT-CTGGAAATAGAAC-AGAAAG-AATTGG--G  1073

seq1  AAGGCAAGTTGAGAGGTTTTTGA--ATGATTGAATAAAGACAATAACAAC  1148
      |||||||| ||||||| ||||||  ||||| |  |    ||  | |    
seq2  AAGGCAAG-TGAGAGG-TTTTGATGATGATGGCTT----ACTCTGA----  1113

seq1  AAGAGTGAAAAACATGGATGAACAA  1173
           ||||| || |||||||||||
seq2  -----TGAAACAC-TGGATGAACAA  1132