BAC Information

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BAC

Clone NameB6Ng01-048L17
Chromosome3 (Build37)
Map Location 123,721,493 - 123,858,300
singlet/doubletdoublet
Overlap genenone
Upstream geneMyoz2, Synpo2, Sec24d, G430022H21Rik, Prss12, EG668804, Ndst3
Downstream geneLOC100043333, EG668809, Tram1l1, LOC100043740, 1700006A11Rik, 1700003H04Rik, LOC668817, LOC668820
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-048L17.bB6Ng01-048L17.g
ACCDH873204DH873205
length1,0201,055
definitionDH873204|Mus musculus domesticus DNA, BAC clone: B6Ng01-048L17, 5' end.DH873205|Mus musculus domesticus DNA, BAC clone: B6Ng01-048L17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(123,857,268 - 123,858,300)(123,721,493 - 123,722,559)
sequence
gaattctataactaatagcaacttggggatgaaagggtttatattctctt
acagcttataaatctgtcatgaagggagtaaggagaggaactgaagacag
aaacctggaggcagaaactggagcagagagcatagaagaacactcactgg
atctctctccatggcttactcagccatttttcttatacagctcaggacca
aggctcagggtcagctttacacagaatgggctggatcctccctcatcaac
catcaatgaagaaaatgccttacaaacttgtctgctaccaacctgatggg
ggcattttcccaactgaggttctgtctttataaataaatcttgccccaaa
ctaggatgcagctgggtctattaataggtaccattcttctagaccagttt
tcttataggaaactccaccaacaagttatgtaaagttctttttgccatca
ccacaacagagtccattcactctgaaaaagtatctgcattaaagttttat
tgtatatacagtccatttcttgcattttaattccaatatcacattatttc
caatccataattggaatatcatgattgtctaagggacttttacattcaaa
tgcattaccttttatactatgttgcagaaagacagcctcttagcaaataa
ttaatgatttaaaaatcactattatatattaaattattattccttatctt
tttttgttttattgaaaataggttggtttttttctcacatgatgtcctga
ttacagttttctctctctacttccagttcctcccccactcactttccatt
cagacccatgtttgtctctccttagaaaacaaacagtttctctaggatag
taataaaataatgtatagtagacaaacaaacaaacaaacaaacatcagaa
taggacagacaaacaaatagagtgaaagagccaaagaatactacataaaa
catatgtgatgcagagactcactgttcacactcagattcataataatcta
actgactgataacacacaca
gaattcttgttcaactcagcatattcacagttatatttatgcttttaaag
atacttatttcataattctgataagtcagttttggagacccaattttgat
gtcaaaatataaagattaagaaagatagtcccctatgtctcattctatag
gagtgtggggatctagctttgatgaacactggataacaaacacagatggc
gtaatcaatgaaaaaaaagcctgcaaatttatgcacaacccagtgtgtct
gacacatcccactgatcaacctactctccaacaggcttatgcttttcatc
tagcttgccccaatactgtagagcacactggacctttctttcagcaaatc
taagttctgtctttctcccctattgcaactaccttaaacaaaccttcttc
aaagaactctgttctttgttattattttgtttcataaaatttaggataat
tactgtacttattgtctgtcccagtggtgggaggatcatagaccacatca
ttcctattaagaaagatacccatcatccccataaaatgtcacctgtatac
acacaggcacactcacacgcacacacacacacacacacacacacacacac
acacacacacgcacttctctggaagacagcactgtttctatgttcccctc
tagtcttatttccaatctcatttttgtaattggacaagttatacattgtt
gtcaagtcttatagaatatataatcttttttaattaggtatttccttcat
ttacatttccaatgctatctcccaaaagtcccccataccctcccccctac
tcccctactcacccactcccacttcttggccctggcattcccctgtactg
aggcatataaagtttgcaaaactgatgggcctctctttccatgatggcca
actaggccatcttctgatacatatgcagctagagacacgagctctggggt
actgtaagttcatattgttgtccattataggttgcagacccattagctct
tggtactttcctagctctctccatggggcctgtggatccatccaataact
gactg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_123857268_123858300
seq2: B6Ng01-048L17.b_46_1065 (reverse)

seq1  TGTGTGTGTTATCAGTTCCAGTTTAGATTTATTATGGAATTCCTGAGTGT  50
      ||||||||||||||||  ||| ||||| ||||||| ||||  ||||||||
seq2  TGTGTGTGTTATCAGT--CAG-TTAGA-TTATTAT-GAAT--CTGAGTGT  43

seq1  GAACAAGTGGGTCTCTGCATCCACATATGTTTTATGTAGTATTCTTTGGC  100
      |||| |||| |||||||||| |||||||||||||||||||||||||||||
seq2  GAAC-AGTGAGTCTCTGCAT-CACATATGTTTTATGTAGTATTCTTTGGC  91

seq1  TCTTTCACTTCTATTTGTTTGTCTTGTCCTATTCTGATGTTTGTTTGTTT  150
      |||||||| |||||||||||||| ||||||||||||||||||||||||||
seq2  TCTTTCAC-TCTATTTGTTTGTC-TGTCCTATTCTGATGTTTGTTTGTTT  139

seq1  GTTTGTTTGTCTTACTATACATTATTTTATTACTATCCTAGAGAAACCTG  200
      ||||||||||| |||||||||||||||||||||||||||||||||| |||
seq2  GTTTGTTTGTC-TACTATACATTATTTTATTACTATCCTAGAGAAA-CTG  187

seq1  TTTGTTTTCTAAGGAGAGACAAACATGGGTCTGAATGGAAAGTGAGTGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTCTAAGGAGAGACAAACATGGGTCTGAATGGAAAGTGAGTGGG  237

seq1  GGAGGAACTGGAAGTAGAGAGAGAAAACTGTAATCAGGACATCATGTGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAACTGGAAGTAGAGAGAGAAAACTGTAATCAGGACATCATGTGAG  287

seq1  AAAAAAACCAACCTATTTTCAATAAAACAAAAAAAGATAAGGAATAATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAACCAACCTATTTTCAATAAAACAAAAAAAGATAAGGAATAATAA  337

seq1  TTTAATATATAATAGTGATTTTTAAATCATTAATTATTTGCTAAGAGGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATATATAATAGTGATTTTTAAATCATTAATTATTTGCTAAGAGGCT  387

seq1  GTCTTTCTGCAACATAGTATAAAAGGTAATGCATTTGAATGTAAAAGTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTCTGCAACATAGTATAAAAGGTAATGCATTTGAATGTAAAAGTCC  437

seq1  CTTAGACAATCATGATATTCCAATTATGGATTGGAAATAATGTGATATTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGACAATCATGATATTCCAATTATGGATTGGAAATAATGTGATATTG  487

seq1  GAATTAAAATGCAAGAAATGGACTGTATATACAATAAAACTTTAATGCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTAAAATGCAAGAAATGGACTGTATATACAATAAAACTTTAATGCAG  537

seq1  ATACTTTTTCAGAGTGAATGGACTCTGTTGTGGTGATGGCAAAAAGAACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTTTTCAGAGTGAATGGACTCTGTTGTGGTGATGGCAAAAAGAACT  587

seq1  TTACATAACTTGTTGGTGGAGTTTCCTATAAGAAAACTGGTCTAGAAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATAACTTGTTGGTGGAGTTTCCTATAAGAAAACTGGTCTAGAAGAA  637

seq1  TGGTACCTATTAATAGACCCAGCTGCATCCTAGTTTGGGGCAAGATTTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTACCTATTAATAGACCCAGCTGCATCCTAGTTTGGGGCAAGATTTAT  687

seq1  TTATAAAGACAGAACCTCAGTTGGGAAAATGCCCCCATCAGGTTGGTAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAAGACAGAACCTCAGTTGGGAAAATGCCCCCATCAGGTTGGTAGC  737

seq1  AGACAAGTTTGTAAGGCATTTTCTTCATTGATGGTTGATGAGGGAGGATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAGTTTGTAAGGCATTTTCTTCATTGATGGTTGATGAGGGAGGATC  787

seq1  CAGCCCATTCTGTGTAAAGCTGACCCTGAGCCTTGGTCCTGAGCTGTATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCATTCTGTGTAAAGCTGACCCTGAGCCTTGGTCCTGAGCTGTATA  837

seq1  AGAAAAATGGCTGAGTAAGCCATGGAGAGAGATCCAGTGAGTGTTCTTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAATGGCTGAGTAAGCCATGGAGAGAGATCCAGTGAGTGTTCTTCT  887

seq1  ATGCTCTCTGCTCCAGTTTCTGCCTCCAGGTTTCTGTCTTCAGTTCCTCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCTCTGCTCCAGTTTCTGCCTCCAGGTTTCTGTCTTCAGTTCCTCT  937

seq1  CCTTACTCCCTTCATGACAGATTTATAAGCTGTAAGAGAATATAAACCCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTACTCCCTTCATGACAGATTTATAAGCTGTAAGAGAATATAAACCCT  987

seq1  TTCATCCCCAAGTTGCTATTAGTTATAGAATTC  1033
      |||||||||||||||||||||||||||||||||
seq2  TTCATCCCCAAGTTGCTATTAGTTATAGAATTC  1020

seq1: chr3_123721493_123722559
seq2: B6Ng01-048L17.g_69_1123

seq1  GAATTCTTGTTCAACTCAGCATATTCACAGTTATATTTATGCTTTTAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGTTCAACTCAGCATATTCACAGTTATATTTATGCTTTTAAAG  50

seq1  ATACTTATTTCATAATTCTGATAAGTCAGTTTTGGAGACCCAATTTTGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTATTTCATAATTCTGATAAGTCAGTTTTGGAGACCCAATTTTGAT  100

seq1  GTCAAAATATAAAGATTAAGAAAGATAGTCCCCTATGTCTCATTCTATAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAAATATAAAGATTAAGAAAGATAGTCCCCTATGTCTCATTCTATAG  150

seq1  GAGTGTGGGGATCTAGCTTTGATGAACACTGGATAACAAACACAGATGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTGGGGATCTAGCTTTGATGAACACTGGATAACAAACACAGATGGC  200

seq1  GTAATCAATGAAAAAAAAGCCTGCAAATTTATGCACAACCCAGTGTGTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATCAATGAAAAAAAAGCCTGCAAATTTATGCACAACCCAGTGTGTCT  250

seq1  GACACATCCCACTGATCAACCTACTCTCCAACAGGCTTATGCTTTTCATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACATCCCACTGATCAACCTACTCTCCAACAGGCTTATGCTTTTCATC  300

seq1  TAGCTTGCCCCAATACTGTAGAGCACACTGGACCTTTCTTTCAGCAAATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTGCCCCAATACTGTAGAGCACACTGGACCTTTCTTTCAGCAAATC  350

seq1  TAAGTTCTGTCTTTCTCCCCTATTGCAACTACCTTAAACAAACCTTCTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTCTGTCTTTCTCCCCTATTGCAACTACCTTAAACAAACCTTCTTC  400

seq1  AAAGAACTCTGTTCTTTGTTATTATTTTGTTTCATAAAATTTAGGATAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAACTCTGTTCTTTGTTATTATTTTGTTTCATAAAATTTAGGATAAT  450

seq1  TACTGTACTTATTGTCTGTCCCAGTGGTGGGAGGATCATAGACCACATCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTACTTATTGTCTGTCCCAGTGGTGGGAGGATCATAGACCACATCA  500

seq1  TTCCTATTAAGAAAGATACCCATCATCCCCATAAAATGTCACCTGTATAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTATTAAGAAAGATACCCATCATCCCCATAAAATGTCACCTGTATAC  550

seq1  ACACAGGCACACTCACACGCACACACACACACACACACACACACACACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGGCACACTCACACGCACACACACACACACACACACACACACACAC  600

seq1  ACACACACACGCACTTCTCTGGAAGACAGCACTGTTTCTATGTTCCCCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACGCACTTCTCTGGAAGACAGCACTGTTTCTATGTTCCCCTC  650

seq1  TAGTCTTATTTCCAATCTCATTTTTGTAATTGGACAAGTTATACATTGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTTATTTCCAATCTCATTTTTGTAATTGGACAAGTTATACATTGTT  700

seq1  GTCAAGTCTTATAGAATATATAATCTTTTTTAATTAGGTATTTCCTTCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGTCTTATAGAATATATAATCTTTTTTAATTAGGTATTTCCTTCAT  750

seq1  TTACATTTCCAATGCTATCTCCCAAAAGTCCCCCATACCCTCCCCCCTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATTTCCAATGCTATCTCCCAAAAGTCCCCCATACCCTCCCCCCTAC  800

seq1  TCCCCTACTCACCCACTCCCACTTCTTGGCCCTGGCATTCCCCTGTACTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTACTCACCCACTCCCACTTCTTGGCCCTGGCATTCCCCTGTACTG  850

seq1  AGGCATATAAAGTTTGCAAAACTGATGGGCCTCTCTTTCCAATGATGGCC  900
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AGGCATATAAAGTTTGCAAAACTGATGGGCCTCTCTTTCC-ATGATGGCC  899

seq1  AACTAGGCCATCTTCTGATACATATGCAGCTAGAGACACGAGCTCTGGGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||  ||
seq2  AACTAGGCCATCTTCTGATACATATGCAGCTAGAGACACGAGCTCT--GG  947

seq1  GGTACTGGTTAGTTCATATTGTTGTTCCATCTATAGGGTTGCAGACCCCT  1000
      |||||| || |||||||||||||| ||||| |||| ||||||||| ||| 
seq2  GGTACT-GTAAGTTCATATTGTTG-TCCAT-TATA-GGTTGCAGA-CCCA  992

seq1  TTAGCTCCTTGGGTACTTTCTCTAGCTC-CTCCATTGGGGGCCCTGT-GA  1048
      |||||||  | ||||||||| ||||||| ||||||   ||| ||||| ||
seq2  TTAGCTC--TTGGTACTTTC-CTAGCTCTCTCCAT---GGGGCCTGTGGA  1036

seq1  TCCATCCAATAGCTGACTG  1067
      ||||||||||| |||||||
seq2  TCCATCCAATAACTGACTG  1055