BAC Information

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BAC

Clone NameB6Ng01-048O23
Chromosome3 (Build37)X (Build37)
Map Location 41,059,201 - 41,059,737146,753,825 - 146,754,998
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-048O23.bB6Ng01-048O23.g
ACCDH873346DH873347
length9601,175
definitionDH873346|Mus musculus domesticus DNA, BAC clone: B6Ng01-048O23, 5' end.DH873347|Mus musculus domesticus DNA, BAC clone: B6Ng01-048O23, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,059,201 - 41,059,737)(146,753,825 - 146,754,998)
sequence
gaattctttgtttagctctgaccccattttttaatggggttatttaattt
tctggagtccaccttcttgagttctttatatatattggatattagtccat
tatctgatataggatagataaagatcctttcccaatctgttggtggcctt
tttgtcttattgacggtgtcttttgccttgcagaagctttgcagtttcat
gaggtcccatttgtcaatgctcgatcttacagcacaagccattgctgttc
tattcaggaatttttcccctgtgcccatatcttcgaggcttttcaccact
ttctcccctataagtttcagtgtctctggttttatgtgaagttccttgat
ttacttagatttgaccttagtacaaggagataggaatggattgattcaca
ttcttctacatgataccaaccagttgtgccagcaccatttgttgaaaatg
tttccacttgatggttttagctcccttgtcgaagatcaagtgaccatagg
tgtgtaggttcatttctgggtcttcaattctattccattggtctacttgt
ctgtcactataccagtgccatacagtttttatcacaattgctctgtagta
cagctttaggtcaggcatggtgattccaccagaggttcttttatccttga
gaagagtttttgctatcctaggttttttgttattccagatgaatttgcag
attgctctttctaattcgttgaagaattgatttggaattttgatggggat
tgcattgaatctgtatattgcttttggcaagatagccatttctacaatgt
tgatcctgccaattcatgagcatgggagatctttcgatcttctgagatct
tctttaatttctttcttcaggacttgaagattttatcatacagatctttc
tcttccttagtaagagtcacgccaagatatttttataattgtgactatga
gaagggtgtt
gaattcatttcttgggcttcctcttcctgtccactaatacccagcacagt
cacatggtggacctcaagagtgtccctacaagggttgaaaccaacatctc
cctgtttcttgaggatcccattgcaaactgaggagacacattcctgtgct
ctgagctgaggctatcggttgatgcattcaagtctttcctttcgacacca
gtaagcctcaagtgccactatctttaatcacagcctcttctctgaaacaa
actgttttccatctcattcctccatttcacgctcagaagagagcagaaca
ttgatcagaataactcagagaaaattgccatagatagaaagtttctatct
aacatatgccaagtgactgtatgaacccaggtccttgaaaattgcttaat
tattttggaacttatgtcttgagtttcagaactatagttatactaccttg
tgaaagcattcataagagttcataattgctaaaactactttaggtaaaaa
actagtctctgatgacctatatccgtcataaattcctaaggtaaactggt
gtctgaaacaaacatgaattccacacataaatataatgtgtccctgatct
gaaggtcctttttcatttaaacaaccaagcagtccttgcctataaaactc
aaatgaacttgaagtcgaggatgcttatctccattttcctggggccagaa
tattggctttgatagtcatgaataccaaagactctgtataacttatgcag
gaacctcaggcatcttgtaacacttttacatgggaaaagggccagggtgt
attttagctgtagagcaactgtctacaatgcccagggccctgggttccat
gcctagcaacccaggatgaagtcaaattgctgcatcagtaggtgattgtg
ggtgtaggcctcatgtatattcaggacttggaaagctgtgggatgctacc
cttctcactgagtgatcacatccaggagcctctatggaagtcagattctt
ctactcatcaatttctagtgggggcccaagagatcctctctttatctttt
ggccaggtcttttttattcaccaaagctgccttctttggatgtggttact
ccaagaatttccccaacgaatgagccagactggccttggtccgctatacc
aggccatctgactacaacaggcctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059201_41059737
seq2: B6Ng01-048O23.b_50_578 (reverse)

seq1  GAATTGAAGACTCAGAAACGAATCCACACACCTATGGTCACTTGATCTTC  50
      ||||||||||| |||||| ||| | |||||||||||||||||||||||||
seq2  GAATTGAAGACCCAGAAATGAACCTACACACCTATGGTCACTTGATCTTC  50

seq1  GACAAGGGAGCTAAAACCATCCAGTGGAAAAAAGACAGCATTTTCAACAA  100
      ||||||||||||||||||||| ||||||||        ||||||||||||
seq2  GACAAGGGAGCTAAAACCATCAAGTGGAAA--------CATTTTCAACAA  92

seq1  ATGGTGCTGGCACAACTGGTTGTTATCATGTAGAAGAATGCGAATTGATC  150
      |||||||||||||||||||||| ||||||||||||||||| ||||  |||
seq2  ATGGTGCTGGCACAACTGGTTGGTATCATGTAGAAGAATGTGAATCAATC  142

seq1  CACTCCTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGAACGC  200
      || |||||||||||||||||||||||||||||||||  ||||||||||  
seq2  CATTCCTATCTCCTTGTACTAAGGTCAAATCTAAGTAAATCAAGGAACTT  192

seq1  CACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAG  250
      ||||||||||||||||||||||||||||||| ||||||||||| ||||||
seq2  CACATAAAACCAGAGACACTGAAACTTATAGGGGAGAAAGTGGTGAAAAG  242

seq1  CCTTGAAGATATGGTCACAGGGGAAAAATTCCTGCATAGAACAGCAATGG  300
      ||| |||||||||| ||||||||||||||||||| |||||||||||||||
seq2  CCTCGAAGATATGGGCACAGGGGAAAAATTCCTGAATAGAACAGCAATGG  292

seq1  CTTGTGCTGTAAGATTGAGAATAGACAAATGGGACCTCATGAAACTGCAA  350
      ||||||||||||||| ||| || |||||||||||||||||||||||||||
seq2  CTTGTGCTGTAAGATCGAGCATTGACAAATGGGACCTCATGAAACTGCAA  342

seq1  AGCTTCTGCAAGGCAAAAGACACCGTCAATAAGACAAAAAGG-CACCAAC  399
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AGCTTCTGCAAGGCAAAAGACACCGTCAATAAGACAAAAAGGCCACCAAC  392

seq1  AGATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACTAATAT  449
      |||||||||||||||||||| |||||||| ||||||||  ||||||||||
seq2  AGATTGGGAAAGGATCTTTATCTATCCTATATCAGATAATGGACTAATAT  442

seq1  CCAATATATATCAAGAACTCAAGAAGGTGGATTCCAGAAAATCAAATAAC  499
      ||||||||||| ||||||||||||||||||| |||||||||| |||||||
seq2  CCAATATATATAAAGAACTCAAGAAGGTGGACTCCAGAAAATTAAATAAC  492

seq1  CCCATTAAAAAATGGGGCTCAGAGCTAAACAAAGAATT  537
      ||||||||||||||||| ||||||||||||||||||||
seq2  CCCATTAAAAAATGGGG-TCAGAGCTAAACAAAGAATT  529

seq1: chrX_146753825_146754998
seq2: B6Ng01-048O23.g_66_1240 (reverse)

seq1  AAGG-CAGTTGTAGTCAGAATGACT-GTATAGCAGAACAAAGCCAG-CTA  47
      |||| | ||||||||||||  | || ||||||| || ||| ||||| || 
seq2  AAGGCCTGTTGTAGTCAGATGGCCTGGTATAGCGGACCAAGGCCAGTCTG  50

seq1  GCTCATCTGTGGGGAGAAATCTTTGAGTAA-CACATCCAAAGAA-GCAGC  95
      ||||||  || |||  || |||| |||||| ||||||||||||| |||||
seq2  GCTCATTCGTTGGGGAAATTCTTGGAGTAACCACATCCAAAGAAGGCAGC  100

seq1  TTGGTGGAAAATAAAAAAGA-CTTGCACAAAGATAAAGAGAGGATCTCTT  144
      ||  |||  ||||||||||| || ||  ||||||||||||||||||||||
seq2  TT--TGGTGAATAAAAAAGACCTGGCCAAAAGATAAAGAGAGGATCTCTT  148

seq1  GAGCCCCCCACTAGATATTGATGAGTAGAAAGAATCTGACTTCCATAGAG  194
      | | ||||||||||| |||||||||||| |||||||||||||||||||||
seq2  G-GGCCCCCACTAGAAATTGATGAGTAG-AAGAATCTGACTTCCATAGAG  196

seq1  GCTCCTGGATGTGATCACTTCAGTGAGAAGGGTAGCATCCCACAGCTTTC  244
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GCTCCTGGATGTGATCAC-TCAGTGAGAAGGGTAGCATCCCACAGCTTTC  245

seq1  CAAGTCCTGAATATACATGAGGCCTACACCCACAATCACCTACTGATGCA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCCTGAATATACATGAGGCCTACACCCACAATCACCTACTGATGCA  295

seq1  GCAATTTGACTTCATCCTGGGTTGCTAGGCATGGAACCCAGGGCCCTGGG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTTGACTTCATCCTGGGTTGCTAGGCATGGAACCCAGGGCCCTGGG  345

seq1  CATTGTAGACAGTTGCTCTACAGCTAAAATACACCCTGGCCCTTTTCCCA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTAGACAGTTGCTCTACAGCTAAAATACACCCTGGCCCTTTTCCCA  395

seq1  TGTAAAAGTGTTACAAGATGCCTGAGGTTCCTGCATAAGTTATACAGAGT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAAGTGTTACAAGATGCCTGAGGTTCCTGCATAAGTTATACAGAGT  445

seq1  CTTTGGTATTCATGACTATCAAAGCCAATATTCTGGCCCCAGGAAAATGG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGTATTCATGACTATCAAAGCCAATATTCTGGCCCCAGGAAAATGG  495

seq1  AGATAAGCATCCTCGACTTCAAGTTCATTTGAGTTTTATAGGCAAGGACT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAGCATCCTCGACTTCAAGTTCATTTGAGTTTTATAGGCAAGGACT  545

seq1  GCTTGGTTGTTTAAATGAAAAAGGACCTTCAGATCAGGGACACATTATAT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGTTGTTTAAATGAAAAAGGACCTTCAGATCAGGGACACATTATAT  595

seq1  TTATGTGTGGAATTCATGTTTGTTTCAGACACCAGTTTACCTTAGGAATT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTGTGGAATTCATGTTTGTTTCAGACACCAGTTTACCTTAGGAATT  645

seq1  TATGACGGATATAGGTCATCAGAGACTAGTTTTTTACCTAAAGTAGTTTT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGACGGATATAGGTCATCAGAGACTAGTTTTTTACCTAAAGTAGTTTT  695

seq1  AGCAATTATGAACTCTTATGAATGCTTTCACAAGGTAGTATAACTATAGT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATTATGAACTCTTATGAATGCTTTCACAAGGTAGTATAACTATAGT  745

seq1  TCTGAAACTCAAGACATAAGTTCCAAAATAATTAAGCAATTTTCAAGGAC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAACTCAAGACATAAGTTCCAAAATAATTAAGCAATTTTCAAGGAC  795

seq1  CTGGGTTCATACAGTCACTTGGCATATGTTAGATAGAAACTTTCTATCTA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTTCATACAGTCACTTGGCATATGTTAGATAGAAACTTTCTATCTA  845

seq1  TGGCAATTTTCTCTGAGTTATTCTGATCAATGTTCTGCTCTCTTCTGAGC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAATTTTCTCTGAGTTATTCTGATCAATGTTCTGCTCTCTTCTGAGC  895

seq1  GTGAAATGGAGGAATGAGATGGAAAACAGTTTGTTTCAGAGAAGAGGCTG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAATGGAGGAATGAGATGGAAAACAGTTTGTTTCAGAGAAGAGGCTG  945

seq1  TGATTAAAGATAGTGGCACTTGAGGCTTACTGGTGTCGAAAGGAAAGACT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTAAAGATAGTGGCACTTGAGGCTTACTGGTGTCGAAAGGAAAGACT  995

seq1  TGAATGCATCAACCGATAGCCTCAGCTCAGAGCACAGGAATGTGTCTCCT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGCATCAACCGATAGCCTCAGCTCAGAGCACAGGAATGTGTCTCCT  1045

seq1  CAGTTTGCAATGGGATCCTCAAGAAACAGGGAGATGTTGGTTTCAACCCT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTGCAATGGGATCCTCAAGAAACAGGGAGATGTTGGTTTCAACCCT  1095

seq1  TGTAGGGACACTCTTGAGGTCCACCATGTGACTGTGCTGGGTATTAGTGG  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGGACACTCTTGAGGTCCACCATGTGACTGTGCTGGGTATTAGTGG  1145

seq1  ACAGGAAGAGGAAGCCCAAGAAATGAATTC  1174
      ||||||||||||||||||||||||||||||
seq2  ACAGGAAGAGGAAGCCCAAGAAATGAATTC  1175