BAC Information

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BAC

Clone NameB6Ng01-050F11
Chromosome3 (Build37)13 (Build37)
Map Location 41,059,187 - 41,059,73775,937,339 - 75,938,274
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-050F11.bB6Ng01-050F11.g
ACCDH874316DH874317
length825914
definitionDH874316|Mus musculus domesticus DNA, BAC clone: B6Ng01-050F11, 5' end.DH874317|Mus musculus domesticus DNA, BAC clone: B6Ng01-050F11, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,059,187 - 41,059,737)(75,937,339 - 75,938,274)
sequence
gaattctttgtttagctctgatccccgttttttaatgggattatttgatt
ttctagagtgtaccttcttgaattctttatatatatttgatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggcct
ttttctcttattgacggtgtcttttgctttgcagaagctttgcaatttta
tgaggtcccatttgtcgattcttgatctaaaagcacaagccattgctgtt
ctattcaggaatttttcccctgtaccaatatcttcgaggcttttccgtac
tttctcctctataagtttcagtgtctctggttttatgtggagttccttaa
tccacttagatttgaccttagtataaggagataggaatggatcaattctc
attcttctacatgataaccgcagttgagccagcaccatttgttgaaaatg
ctgtctttttttccactggatggtttttgctcccttttcaaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtcgctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtcaggcttggtgattccaccagaggttcttt
tatccttgagaagagtttttggtatcctaggtttttgttattccagatga
atttgcagattgacctttctaatttgttgaagaattgagttggaatttga
tggggattgaatgatctgtagattgttttggcagaaagccatttttacta
tattgatcctgccatccatgagcat
gaattccaagattgtcagcttcaaggatttggaacactggcagaggctca
cctatgtcaaaattcaacctttaaaggcacttataatgaatcaatactga
aagagagcatacaccatactaacgtggggatcgggtttgagtatacgggc
tatgagaatgccaaggttccaggaggctgaatttccttgaaactctttgc
ctcgcgactgcctccaggcttttcaaccccgacaggcagacttcactgga
gtgggcatagcacttgagagctctggacttgaacgtgtctcactgtaatg
tggcagcactggtgccatagcactggaatagcactgcagtgtagaccagt
agctgctgtgaggccctcccagccctgtggctgctaagctttaccccatc
cattccacaacacacatggttctgttactgtcacaggattgggccgcatg
tacatgagacatggcaaaggaacatggtctttgcaatcgtttgccatcta
gtgaaaccgtctatacagactggcatagtttgcagactccaggaggcagt
ttgaatttgctgggtcaccacagatgatatatttgtcaacatctgttttc
acagatctagctcactcctgccagcagtaggcctgggttccccctgaagc
caagagtccctaacagcagaaaaaacaaacaagtgccaggtgccaggtgt
gggtctaaactttagactctaaaactgtggttctcaacctccctaatgct
atgaccttcatatgtggtaactctcaaacataacattattttgtactact
cataaatgtaatttcgttatgtatatatctgttactgataatatacagat
tatctgatatgtgacccagggagggggcatcgagacacagtagacactgc
tctagcttgcaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059187_41059737
seq2: B6Ng01-050F11.b_42_593 (reverse)

seq1  AGACCAATGGAATAGAATTGAAGACTCAGAAACGAATCCACACACCTATG  50
      ||||||||||||||||||||||||| |||||| ||| |||||||||||||
seq2  AGACCAATGGAATAGAATTGAAGACCCAGAAATGAACCCACACACCTATG  50

seq1  GTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCAGTGG-AAAAAAGA  99
      ||||||||||||| || |||||||| ||||||||||||||| ||||||||
seq2  GTCACTTGATCTTTGAAAAGGGAGCAAAAACCATCCAGTGGAAAAAAAGA  100

seq1  CAGCATTTTCAACAAATGGTGCTGGCACAACTGGTTGTTATCATGTAGAA  149
      |||||||||||||||||||||||||| ||||| |  ||||||||||||||
seq2  CAGCATTTTCAACAAATGGTGCTGGCTCAACT-GCGGTTATCATGTAGAA  149

seq1  GAATGCGAATTGATCCACTCCTATCTCCTTGTACTAAGGTCAAATCTAAG  199
      ||||| ||||||||||| |||||||||||| |||||||||||||||||||
seq2  GAATGAGAATTGATCCATTCCTATCTCCTTATACTAAGGTCAAATCTAAG  199

seq1  TGGATCAAGGAACGCCACATAAAACCAGAGACACTGAAACTTATAGAGGA  249
      ||||| ||||||| ||||||||||||||||||||||||||||||||||||
seq2  TGGATTAAGGAACTCCACATAAAACCAGAGACACTGAAACTTATAGAGGA  249

seq1  GAAAGTGGGGAAAAGCCTTGAAGATATGGTCACAGGGGAAAAATTCCTGC  299
      ||||||  |||||||||| |||||||| |  |||||||||||||||||| 
seq2  GAAAGTACGGAAAAGCCTCGAAGATATTGGTACAGGGGAAAAATTCCTGA  299

seq1  ATAGAACAGCAATGGCTTGTGCTGTAAGATTGAGAATAGACAAATGGGAC  349
      ||||||||||||||||||||||| | ||||  ||||| ||||||||||||
seq2  ATAGAACAGCAATGGCTTGTGCTTTTAGATCAAGAATCGACAAATGGGAC  349

seq1  CTCATGAAACTGCAAAGCTTCTGCAAGGCAAAAGACACCGTCAATAAGAC  399
      ||||| ||| |||||||||||||||| |||||||||||||||||||||| 
seq2  CTCATAAAATTGCAAAGCTTCTGCAAAGCAAAAGACACCGTCAATAAGAG  399

seq1  AAAAAGG-CACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAG  448
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGGCCACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAG  449

seq1  ATAGGGGACTAATATCCAATATATATCAAGAACTCAAGAAGGTGGATTCC  498
      |||||||||||||||| ||||||||| ||||| ||||||||||  | || 
seq2  ATAGGGGACTAATATCAAATATATATAAAGAATTCAAGAAGGTACACTCT  499

seq1  AGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAGCTAAACAAAGA  548
      |||||||||||||| |||||||||||| |||| |||||||||||||||||
seq2  AGAAAATCAAATAATCCCATTAAAAAACGGGGATCAGAGCTAAACAAAGA  549

seq1  ATT  551
      |||
seq2  ATT  552

seq1: chr13_75937339_75938274
seq2: B6Ng01-050F11.g_66_979

seq1  GAATTCCAAGATTGTCAGCTTCAAGGATTTGGAACACTGGCAGAGGCTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGATTGTCAGCTTCAAGGATTTGGAACACTGGCAGAGGCTCA  50

seq1  CCTATGTCAAAATTCAACCTTTAAAGGCACTTATAATGAATCAATACTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATGTCAAAATTCAACCTTTAAAGGCACTTATAATGAATCAATACTGA  100

seq1  AAGAGAGCATACACCATACTAACGTGGGGATCGGGTTTGAGTATACGGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAGCATACACCATACTAACGTGGGGATCGGGTTTGAGTATACGGGC  150

seq1  TATGAGAATGCCAAGGTTCCAGGAGGCTGAATTTCCTTGAAACTCTTTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGAATGCCAAGGTTCCAGGAGGCTGAATTTCCTTGAAACTCTTTGC  200

seq1  CTCGCGACTGCCTCCAGGCTTTTCAACCCCGACAGGCAGACTTCACTGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGCGACTGCCTCCAGGCTTTTCAACCCCGACAGGCAGACTTCACTGGA  250

seq1  GTGGGCATAGCACTTGAGAGCTCTGGACTTGAACGTGTCTCACTGTAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGCATAGCACTTGAGAGCTCTGGACTTGAACGTGTCTCACTGTAATG  300

seq1  TGGCAGCACTGGTGCCATAGCACTGGAATAGCACTGCAGTGTAGACCAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGCACTGGTGCCATAGCACTGGAATAGCACTGCAGTGTAGACCAGT  350

seq1  AGCTGCTGTGAGGCCCTCCCAGCCCTGTGGCTGCTAAGCTTTACCCCATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCTGTGAGGCCCTCCCAGCCCTGTGGCTGCTAAGCTTTACCCCATC  400

seq1  CATTCCACAACACACATGGTTCTGTTACTGTCACAGGATTGGGCCGCATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCACAACACACATGGTTCTGTTACTGTCACAGGATTGGGCCGCATG  450

seq1  TACATGAGACATGGCAAAGGAACATGGTCTTTGCAATCGTTTGCCATCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGAGACATGGCAAAGGAACATGGTCTTTGCAATCGTTTGCCATCTA  500

seq1  GTGAAACCGTCTATACAGACTGGCATAGTTTGCAGACTCCAGGAGGCAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAACCGTCTATACAGACTGGCATAGTTTGCAGACTCCAGGAGGCAGT  550

seq1  TTGAATTTGCTGGGTCACCACAGATGATATATTTGTCAACATCTGTTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATTTGCTGGGTCACCACAGATGATATATTTGTCAACATCTGTTTTC  600

seq1  ACAGATCTAGCTCACTCCTGCCAGCAGTAGGCCTGGGTTCCCCCTGAAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATCTAGCTCACTCCTGCCAGCAGTAGGCCTGGGTTCCCCCTGAAGC  650

seq1  CAAGAGTCCCTAACAGCAGAAAAAACAAACAAGTGCCAGGTGCCAGGTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGTCCCTAACAGCAGAAAAAACAAACAAGTGCCAGGTGCCAGGTGT  700

seq1  GGGTCTAAACTTTAGACTCTAAAACTGTGGTTCTCAACCTCCCTAATGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTAAACTTTAGACTCTAAAACTGTGGTTCTCAACCTCCCTAATGCT  750

seq1  ATGACCTTCATATTGTGGTAACTCTCAAACATAACATTATTTTGTTACTA  800
      |||||||||||| ||||||||||||||||||||||||||||||| |||||
seq2  ATGACCTTCATA-TGTGGTAACTCTCAAACATAACATTATTTTG-TACTA  798

seq1  CTTCATAAATGTAATTTCGTTATTGTTATATTATCTGTATACTGATAATA  850
      | |||||||||||||||||||||   |||| ||||||| |||||||||||
seq2  C-TCATAAATGTAATTTCGTTAT--GTATA-TATCTGT-TACTGATAATA  843

seq1  TACAGATTATCTGATATGTGAACCCAAGGGGAGGGGGGCATCGAGAACCA  900
      |||||||||||||||||||| |||||  |||| |||||||||||||  ||
seq2  TACAGATTATCTGATATGTG-ACCCA--GGGA-GGGGGCATCGAGA--CA  887

seq1  CAGGTTAAGAACCACTGCTCTAAAGGCTTTGCAGGG  936
      |||    |||  ||||||||||   || ||||||||
seq2  CAG---TAGA--CACTGCTCTA---GC-TTGCAGGG  914