BAC Information

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BAC

Clone NameB6Ng01-050N05
Chromosome3 (Build37)
Map Location 40,000,780 - 40,156,505
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100041432, LOC100040853, LOC100041443, LOC100041458
Downstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-050N05.bB6Ng01-050N05.g
ACCDH874655DH874656
length8081,016
definitionDH874655|Mus musculus domesticus DNA, BAC clone: B6Ng01-050N05, 5' end.DH874656|Mus musculus domesticus DNA, BAC clone: B6Ng01-050N05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,000,780 - 40,001,635)(40,155,485 - 40,156,505)
sequence
gaattctacatagcagtcaaaggaagagattctgtgatttgctcttaagt
agatgactttctagtggaagaagaagaaatttttcaaaaatacctacaaa
gaccatctcctatagcatgaaaactgtttcaatggtttccttggtcactg
ctcactctctccacacaagaatgtggtgttttttttgtttgtttgtttgt
ttgtttttgtttgtttgtttgttttttactgcaataaactctgcctgtct
tctgtgctgcatcctatgtgcccagtttaaatgcgttccacagagatcac
aaggatcaagaaatcagtgaagctctgagcttagacagattcgctctcac
catcatgggctactgtcaagtagtgctcttgcatagtggaaagaagatgc
tgatgttaaattgaggtcaaagctagaaagcagtgagactgcctgatcct
gaacttgaaaaactcaatgtaaaaatagtgagtagaatactctttactaa
cacccacaacagttactatgagcgcttgttttctttgtgcagaagagttt
tttcacatacccaaccctctgacaattttggaactgaatctgaaaaaaat
aaataaaaaatgttttcttcttactcaagaatcagtccccaaataaagca
tgatggaacaggaaagcatacactgggaattataatttgaagcagatggc
aggaagctcttgaagaaaaattacacatgcgtagatgaccctaccaagga
aaatcttctggtataaacactgggttcattcaggaaatgcaagaacagga
attaaatt
gaattcatttctccttttggcttttttcggtatgtgtttgctggctttga
ttagcagacccacagagcaatctgaaataaattagtactgatggatggaa
atcttggtggtttaaatatcattattagtacacacagaatgtctgaaagc
ccacattcttctcttggctatgtctctttgttcctcatctttccaaagtt
ctgtcaaataaaaccctaagtagcttacgatttgcatgtgatgtaggaat
aagaaagacttaaattcttcagacaaaaggatcttttactgacctgctta
aagtttaggtattgctgggtgaatggatggacattggaacagattagata
tctaggttaaaattagatgtacttattgttcatcttactgttaaatggaa
aaacattaccttcatataatatttgtagtaaatggacagataaagcaggt
tgtatttaaataatttatagatggtacatgggtcatctatcagtcaagtg
gaaatacagtttcttttgacctcatacatggcatcactctcttaataatc
gttaggaaaggctgagacaatgaacatatatttagtgttgttgacactaa
ttaagtggtggtgcagggcagacagcacacccttatccagtgggtcttct
ttttctcctttctttctgtactattttctttgccactcctcctccccatt
ctcagctctcctggatggcacaggatgcacagtagccttcagtaaaggtc
aacatcaagttggaattaatgatggtggtgacccatgagaacttataaac
acaggcttgcttggtgattaaggagctgaggggacaaagcttccaggggt
gtcccctgctgagcaacacaggatattgacaggctgggaggtaccttctc
aggaaacacatcttttgagagcagaagacaccgagaactggaaacaagtc
ctttcttctgtggtccaagaccactgggtgggatgggtctcctgtttttt
tttttttttataatct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_40000780_40001635
seq2: B6Ng01-050N05.b_43_850

seq1  GAATTCTACATAGCAGTCAAAGGAAGAGATTCTGTGATTTGCTCTTAAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACATAGCAGTCAAAGGAAGAGATTCTGTGATTTGCTCTTAAGT  50

seq1  AGATGACTTTCTAGTGGAAGAAGAAGAAATTTTTCAAAAATACCTACAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGACTTTCTAGTGGAAGAAGAAGAAATTTTTCAAAAATACCTACAAA  100

seq1  GACCATCTCCTATAGCATGAAAACTGTTTCAATGGTTTCCTTGGTCACTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCATCTCCTATAGCATGAAAACTGTTTCAATGGTTTCCTTGGTCACTG  150

seq1  CTCACTCTCTCCACACAAGAATGTGGTGTTTTTTTTGTTTGTTTGTTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTCTCTCCACACAAGAATGTGGTGTTTTTTTTGTTTGTTTGTTTGT  200

seq1  TTGTTTTTGTTTGTTTGTTTGTTTTTTACTGCAATAAACTCTGCCTGTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTTGTTTGTTTGTTTGTTTTTTACTGCAATAAACTCTGCCTGTCT  250

seq1  TCTGTGCTGCATCCTATGTGCCCAGTTTAAATGCGTTCCACAGAGATCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGCTGCATCCTATGTGCCCAGTTTAAATGCGTTCCACAGAGATCAC  300

seq1  AAGGATCAAGAAATCAGTGAAGCTCTGAGCTTAGACAGATTCGCTCTCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATCAAGAAATCAGTGAAGCTCTGAGCTTAGACAGATTCGCTCTCAC  350

seq1  CATCATGGGCTACTGTCAAGTAGTGCTCTTGCATAGTGGAAAGAAGATGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATGGGCTACTGTCAAGTAGTGCTCTTGCATAGTGGAAAGAAGATGC  400

seq1  TGATGTTAAATTGAGGTCAAAGCTAGAAAGCAGTGAGACTGCCTGAGCCT  450
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TGATGTTAAATTGAGGTCAAAGCTAGAAAGCAGTGAGACTGCCTGATCCT  450

seq1  GAACTTGAAAAACTCAATGT-AAAATAGTGAGTAGAATACTCTTTACTAA  499
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GAACTTGAAAAACTCAATGTAAAAATAGTGAGTAGAATACTCTTTACTAA  500

seq1  CACCCACAACAGTTACTATGAGCGCTTGTTTTCTTTGTGCAGAAGAG-TT  548
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CACCCACAACAGTTACTATGAGCGCTTGTTTTCTTTGTGCAGAAGAGTTT  550

seq1  TTTCACATACCCAACCCTCTGACAA-TTTGGAACTGAATCTGAAAAAAAT  597
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TTTCACATACCCAACCCTCTGACAATTTTGGAACTGAATCTGAAAAAAAT  600

seq1  AAATAAAAAATG-TTTCTTCTTACTCAAGAATCAGTCCCCAAATAAAGCA  646
      |||||||||||| |||||||||||||||||||||||||||||||||||| 
seq2  AAATAAAAAATGTTTTCTTCTTACTCAAGAATCAGTCCCCAAATAAAGC-  649

seq1  ATGATGGAACAGGAAAGCATACAC-GGGAAATAAAATTTGAAGCAGATGG  695
      |||||||||||||||||||||||| ||||| || ||||||||||||||||
seq2  ATGATGGAACAGGAAAGCATACACTGGGAATTATAATTTGAAGCAGATGG  699

seq1  CAGGAAGCCCTTGAAGAAAAATTACACATGCGTAGATGACCCTACCAAGG  745
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAGCTCTTGAAGAAAAATTACACATGCGTAGATGACCCTACCAAGG  749

seq1  AAAATCATTCTGGTATAAACACTGGGTTCATTCAAGAGATGGCTAAGAAC  795
      |||||| ||||||||||||||||||||||||||| || |||   ||||||
seq2  AAAATC-TTCTGGTATAAACACTGGGTTCATTCAGGAAATG--CAAGAAC  796

seq1  AGGAA-TAAAGTGAAATAGTTTGACCGATAAGTGATTACCATGGGGAAAA  844
      ||||| |||| |                                      
seq2  AGGAATTAAATT--------------------------------------  808

seq1  TATTTTTAAATT  856
                  
seq2  ------------  808

seq1: chr3_40155485_40156505
seq2: B6Ng01-050N05.g_66_1081 (reverse)

seq1  AGATTAAAAAAAAAAAAAAAAACAGAAAGACCCATCCCACCCAAGGTGTC  50
      |||||| ||||||||||||||||||  ||||||||||||||| ||  |||
seq2  AGATTATAAAAAAAAAAAAAAACAG-GAGACCCATCCCACCC-AGTGGTC  48

seq1  TTTGAGCACAGAAGAAAGGACTTGTGTCCAGTTTCTC-GTGTC-TCTGCT  98
      || || ||||||||||||||||||| ||||| ||||| ||||| ||||||
seq2  TTGGACCACAGAAGAAAGGACTTGTTTCCAG-TTCTCGGTGTCTTCTGCT  97

seq1  CTTCAAAAGATTGTGTTTTCCTGAGAAGGTACCTCCCAGCCTGTCAATAT  148
      | |||||||| |||| ||||||||||||||||||||||||||||||||| 
seq2  C-TCAAAAGA-TGTG-TTTCCTGAGAAGGTACCTCCCAGCCTGTCAATA-  143

seq1  TCCTGTGTTCGCTCAGCAGGGGACA-CCCTGGAAGCTTTTGTCCCCTCAG  197
      ||||||||| ||||||||||||||| |||||||||| |||||||||||||
seq2  TCCTGTGTT-GCTCAGCAGGGGACACCCCTGGAAGC-TTTGTCCCCTCAG  191

seq1  CTCCTTATTCACC-AGCAAGCCTGTGTTTATAAGTTCTCATGTGTCACCA  246
      ||||||| ||||| |||||||||||||||||||||||||||| |||||||
seq2  CTCCTTAATCACCAAGCAAGCCTGTGTTTATAAGTTCTCATGGGTCACCA  241

seq1  CCATCATTAATTCCAACTTGATGTTGACC-TTACTGAAGGCTACTGTGCA  295
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CCATCATTAATTCCAACTTGATGTTGACCTTTACTGAAGGCTACTGTGCA  291

seq1  TCCTGTGCCATCCAGGAGAGCTGAGAATTGGGGAGGAGGAGTGGCAAAGA  345
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TCCTGTGCCATCCAGGAGAGCTGAGAA-TGGGGAGGAGGAGTGGCAAAGA  340

seq1  AAATAGTACAGAAAGAAAGGAGAAAAAGAAGACCCACTGGATAAGGGTGT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGTACAGAAAGAAAGGAGAAAAAGAAGACCCACTGGATAAGGGTGT  390

seq1  GCTGTCTGCCCTGCACCACCACTTAATTAGTGTCAACAACACTAAATATA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCTGCCCTGCACCACCACTTAATTAGTGTCAACAACACTAAATATA  440

seq1  TGTTCATTGTCTCAGCCTTTCCTAACGATTATTAAGAGAGTGATGCCATG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCATTGTCTCAGCCTTTCCTAACGATTATTAAGAGAGTGATGCCATG  490

seq1  TATGAGGTCAAAAGAAACTGTATTTCCACTTGACTGATAGATGACCCATG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGGTCAAAAGAAACTGTATTTCCACTTGACTGATAGATGACCCATG  540

seq1  TACCATCTATAAATTATTTAAATACAACCTGCTTTATCTGTCCATTTACT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATCTATAAATTATTTAAATACAACCTGCTTTATCTGTCCATTTACT  590

seq1  ACAAATATTATATGAAGGTAATGTTTTTCCATTTAACAGTAAGATGAACA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATATTATATGAAGGTAATGTTTTTCCATTTAACAGTAAGATGAACA  640

seq1  ATAAGTACATCTAATTTTAACCTAGATATCTAATCTGTTCCAATGTCCAT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTACATCTAATTTTAACCTAGATATCTAATCTGTTCCAATGTCCAT  690

seq1  CCATTCACCCAGCAATACCTAAACTTTAAGCAGGTCAGTAAAAGATCCTT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCACCCAGCAATACCTAAACTTTAAGCAGGTCAGTAAAAGATCCTT  740

seq1  TTGTCTGAAGAATTTAAGTCTTTCTTATTCCTACATCACATGCAAATCGT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTGAAGAATTTAAGTCTTTCTTATTCCTACATCACATGCAAATCGT  790

seq1  AAGCTACTTAGGGTTTTATTTGACAGAACTTTGGAAAGATGAGGAACAAA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTACTTAGGGTTTTATTTGACAGAACTTTGGAAAGATGAGGAACAAA  840

seq1  GAGACATAGCCAAGAGAAGAATGTGGGCTTTCAGACATTCTGTGTGTACT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACATAGCCAAGAGAAGAATGTGGGCTTTCAGACATTCTGTGTGTACT  890

seq1  AATAATGATATTTAAACCACCAAGATTTCCATCCATCAGTACTAATTTAT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATGATATTTAAACCACCAAGATTTCCATCCATCAGTACTAATTTAT  940

seq1  TTCAGATTGCTCTGTGGGTCTGCTAATCAAAGCCAGCAAACACATACCGA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGATTGCTCTGTGGGTCTGCTAATCAAAGCCAGCAAACACATACCGA  990

seq1  AAAAAGCCAAAAGGAGAAATGAATTC  1021
      ||||||||||||||||||||||||||
seq2  AAAAAGCCAAAAGGAGAAATGAATTC  1016