BAC Information

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BAC

Clone NameB6Ng01-053M14
Chromosome3 (Build37)
Map Location 94,070,212 - 94,200,528
singlet/doubletdoublet
Overlap geneEG212727, Them4, Them5, Gm659, Rorc
Upstream geneEG668300, LOC668304, Flg, LOC100042701, Hrnr, Rptn, EG383891, Tchh, Tchhl1, S100a11, S100a10, EG433623, Tdpoz2, Tdpoz1, LOC668325, LOC545550, EG436563, Tdpoz4, Tdpoz3, EG668341, LOC668344, EG668346, Tdpoz5, EG668353, EG668356, LOC668359, LOC100042761, LOC433624, LOC668367, LOC433625, LOC100043188, EG383977, EG245290, EG668385
Downstream geneLingo4, Tdrkh, Oaz3, Mrpl9, LOC668403, 2310007A19Rik, Tnrc4, Snx27, LOC100043228, EG668409, Tuft1, LOC100042793, BC021767, Selenbp2, LOC100042801, Cgn, Pogz, Psmb4, Selenbp1, Rfx5, Pik4cb, Zfp687, Psmd4, Pip5k1a, Vps72, Tmod4, Scnm1, Lysmd1, Tnfaip8l2, LOC668436, Sema6c, Gabpb2, Mllt11, Cdc42se1, Gm128, Bnipl, Prune, 4930504E06Rik, Anxa9, Lass2, Setdb1, LOC100043294, 4930558C23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-053M14.bB6Ng01-053M14.g
ACCDH876729DH876730
length954692
definitionDH876729|Mus musculus domesticus DNA, BAC clone: B6Ng01-053M14, 5' end.DH876730|Mus musculus domesticus DNA, BAC clone: B6Ng01-053M14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,199,575 - 94,200,528)(94,070,212 - 94,070,901)
sequence
gaattcatgttcatcacctgcttgttttcactaaacagtttctaggaagg
tgcctaactcagcaggtagtaagtcagtatagtaagcctccagccaaagg
aaggtaaacctctaagaaaggtgcagaagcccaggggacagaggcaggga
gaaagaccccaggcaccatctctcctacgcaatttacagcataatgaact
gagacttaaaaaccactctttcttgacatctccccttcttagcttagttc
cttagaaaaagtaacaatcagaaaagtaggtagcagagtgagtcccttac
gcctcttgaatttattttgtgttttagtactttgagtttgcctgggttac
tacaatagtttcttttattcattcaaaagatatttgttgagaaactccat
aaatctagatgaggcactgtcatgagctctggtgtaacatcggtgaataa
aaagatgtgcttttattaaatgtgcacagcagccagggagtcataaacac
agttacgtaccgcctaacaacttttcggggaattatgaacctcaaacttc
agtggtcccataaggctaagggagtatggacgacagtacagctgtgtttg
tttgtattaagtatatccagttgtaccccaccatgtgaagctatgggtaa
gcatttcttagaacatattcctgttagtaagcagcatatgattgtatctg
atactaaagcaggataagggatggggtccttctccagttccggtaactgt
tttaaggaaaaccttctcttgaatgaaggcctggaaaaaatacttggaaa
acagggaagagaatatgacaggagacatagcggtataagaggccccatag
agatgggaccagtgaaaatatactgtggtcagagtaggggagtcaaagga
ttggtgcaacgtcaggtgaggaggaaggcaggtggtccattgactgtaca
tgga
gaattcacggctcacaaggccatcctagcagctcgttctccagttttcag
agccatgtttgaacatcaaatggaggagagactaacaaaccgtgttgata
tcaatggcctggatcccaaagtcttcaaggagatgatgggcttcatttac
actgggaaggcaccacacctccacatccactccatggcctgtgatctgct
ggcagctgctgacaggtatggccttgagggcttgaaggtcatgtgtgagg
atgccctctgcaggaacctctctgtggagaatgctgcacacactctcatc
ttagctgacctccacaacatagagcagctgaagactcaggccctggattt
cattgcacttcatgcttctgaggtctctgagaactcagagtggaagtcaa
tgatggagtcccatccccacttggtggctgaaacattccactccctggct
tctgcacagtgtttcttggaaccctcaatcaaacacctaaaataagttta
ggggatggaaatctatgaccaacatctgtcttccaacaggtataaccagt
gttgttaccactgatttctggttagagtacagtattgctggaacatttat
agtgaacctgtgaaaaagaagcatggtggctcaggatttaaaacagctgt
taaattttaaaaatggtgggtggggggatgggcagcactgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_94199575_94200528
seq2: B6Ng01-053M14.b_41_994 (reverse)

seq1  TCCATGTTACAGTCAAATGGACCACCCTGCCTTCCTCCTCACCTGACGTT  50
      |||||| ||||||| ||||||||| |||||||||||||||||||||||||
seq2  TCCATG-TACAGTC-AATGGACCA-CCTGCCTTCCTCCTCACCTGACGTT  47

seq1  GCACC-ATCCTTTGACTCCCCTACTCTGACCACAGTATTTTTTCACTGGT  99
      ||||| |||||||||||||||||||||||||||||||| |||||||||||
seq2  GCACCAATCCTTTGACTCCCCTACTCTGACCACAGTATATTTTCACTGGT  97

seq1  CCCATCTCTCTGGGGCCTCTTATACCTGCTATTGTCTCCTGTCATATTCT  149
      ||||||||| |||||||||||||||| |||| ||||||||||||||||||
seq2  CCCATCTCTATGGGGCCTCTTATACC-GCTA-TGTCTCCTGTCATATTCT  145

seq1  CTTCCCTG-TTTCCAAGTATTTTCTCCAGGCCTTCATTCAAGAG-AGGTT  197
      |||||||| |||||||||||||| |||||||||||||||||||| |||||
seq2  CTTCCCTGTTTTCCAAGTATTTTTTCCAGGCCTTCATTCAAGAGAAGGTT  195

seq1  TTCCTT-AAACAGTTACCGG-ACTGGAGAAGGACCCCATCCCTTATCCTG  245
      |||||| ||||||||||||| |||||||||||||||||||||||||||||
seq2  TTCCTTAAAACAGTTACCGGAACTGGAGAAGGACCCCATCCCTTATCCTG  245

seq1  CTTTAGTATCAGATACAATCATATGCTGCTTACTAACAGGAATATGTTCT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGTATCAGATACAATCATATGCTGCTTACTAACAGGAATATGTTCT  295

seq1  AAGAAATGCTTACCCATAGCTTCACATGGTGGGGTACAACTGGATATACT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATGCTTACCCATAGCTTCACATGGTGGGGTACAACTGGATATACT  345

seq1  TAATACAAACAAACACAGCTGTACTGTCGTCCATACTCCCTTAGCCTTAT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACAAACAAACACAGCTGTACTGTCGTCCATACTCCCTTAGCCTTAT  395

seq1  GGGACCACTGAAGTTTGAGGTTCATAATTCCCCGAAAAGTTGTTAGGCGG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACCACTGAAGTTTGAGGTTCATAATTCCCCGAAAAGTTGTTAGGCGG  445

seq1  TACGTAACTGTGTTTATGACTCCCTGGCTGCTGTGCACATTTAATAAAAG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGTAACTGTGTTTATGACTCCCTGGCTGCTGTGCACATTTAATAAAAG  495

seq1  CACATCTTTTTATTCACCGATGTTACACCAGAGCTCATGACAGTGCCTCA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCTTTTTATTCACCGATGTTACACCAGAGCTCATGACAGTGCCTCA  545

seq1  TCTAGATTTATGGAGTTTCTCAACAAATATCTTTTGAATGAATAAAAGAA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGATTTATGGAGTTTCTCAACAAATATCTTTTGAATGAATAAAAGAA  595

seq1  ACTATTGTAGTAACCCAGGCAAACTCAAAGTACTAAAACACAAAATAAAT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTGTAGTAACCCAGGCAAACTCAAAGTACTAAAACACAAAATAAAT  645

seq1  TCAAGAGGCGTAAGGGACTCACTCTGCTACCTACTTTTCTGATTGTTACT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGAGGCGTAAGGGACTCACTCTGCTACCTACTTTTCTGATTGTTACT  695

seq1  TTTTCTAAGGAACTAAGCTAAGAAGGGGAGATGTCAAGAAAGAGTGGTTT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTAAGGAACTAAGCTAAGAAGGGGAGATGTCAAGAAAGAGTGGTTT  745

seq1  TTAAGTCTCAGTTCATTATGCTGTAAATTGCGTAGGAGAGATGGTGCCTG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTCTCAGTTCATTATGCTGTAAATTGCGTAGGAGAGATGGTGCCTG  795

seq1  GGGTCTTTCTCCCTGCCTCTGTCCCCTGGGCTTCTGCACCTTTCTTAGAG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTTTCTCCCTGCCTCTGTCCCCTGGGCTTCTGCACCTTTCTTAGAG  845

seq1  GTTTACCTTCCTTTGGCTGGAGGCTTACTATACTGACTTACTACCTGCTG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTACCTTCCTTTGGCTGGAGGCTTACTATACTGACTTACTACCTGCTG  895

seq1  AGTTAGGCACCTTCCTAGAAACTGTTTAGTTAAAACAAGCAGGTGATGAA  945
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AGTTAGGCACCTTCCTAGAAACTGTTTAGTGAAAACAAGCAGGTGATGAA  945

seq1  CATGAATTC  954
      |||||||||
seq2  CATGAATTC  954

seq1: chr3_94070212_94070901
seq2: B6Ng01-053M14.g_70_761

seq1  GAATTCAGGGCTCACAAGGCCATCCTAGCAGCTCGTTCTCCAGTTTTCAG  50
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACGGCTCACAAGGCCATCCTAGCAGCTCGTTCTCCAGTTTTCAG  50

seq1  AGCCATGTTTGAACATCAAATGGAGGAGAGACTAACAAACCGTGTTGATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATGTTTGAACATCAAATGGAGGAGAGACTAACAAACCGTGTTGATA  100

seq1  TCAATGGCCTGGATCCCAAAGTCTTCAAGGAGATGATGGGCTTCATTTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGGCCTGGATCCCAAAGTCTTCAAGGAGATGATGGGCTTCATTTAC  150

seq1  ACTGGGAAGGCACCACACCTCCACATCCACTCCATGGCCTGTGATCTGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGAAGGCACCACACCTCCACATCCACTCCATGGCCTGTGATCTGCT  200

seq1  GGCAGCTGCTGACAGGTATGGCCTTGAGGGCTTGAAGGTCATGTGTGAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCTGCTGACAGGTATGGCCTTGAGGGCTTGAAGGTCATGTGTGAGG  250

seq1  ATGCCCTCTGCAGGAACCTCTCTGTGGAGAATGCTGCACACACTCTCATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCCTCTGCAGGAACCTCTCTGTGGAGAATGCTGCACACACTCTCATC  300

seq1  TTAGCTGACCTCCACAACATAGAGCAGCTGAAGACTCAGGCCCTGGATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTGACCTCCACAACATAGAGCAGCTGAAGACTCAGGCCCTGGATTT  350

seq1  CATTGCACTTCATGCTTCTGAGGTCTCTGAGAACTCAGAGTGGAAGTCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCACTTCATGCTTCTGAGGTCTCTGAGAACTCAGAGTGGAAGTCAA  400

seq1  TGATGGAGTCCCATCCCCACTTGGTGGCTGAAACATTCCACTCCCTGGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGAGTCCCATCCCCACTTGGTGGCTGAAACATTCCACTCCCTGGCT  450

seq1  TCTGCACAGTGTTTCTTGGAACCCTCAATCAAACACCTAAAATAAGTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCACAGTGTTTCTTGGAACCCTCAATCAAACACCTAAAATAAGTTTA  500

seq1  GGGGATGGAAATCTATGACCAACATCTGTCTTCCAACAGGTATAACCAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGATGGAAATCTATGACCAACATCTGTCTTCCAACAGGTATAACCAGT  550

seq1  GTTGTTACCACTGATTTCTGGTTAGAGTACAGTATTGCTGGAACATTTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTACCACTGATTTCTGGTTAGAGTACAGTATTGCTGGAACATTTAT  600

seq1  AGTGAACCTGTGAAAAAGAAGCATGGTGGCTCAGGATTTAAAACAGCTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAACCTGTGAAAAAGAAGCATGGTGGCTCAGGATTTAAAACAGCTGT  650

seq1  TATATGTT-AAAATGGTGGGT-GGGGGATGGGCAGCACTGGA  690
      || || || |||||||||||| ||||||||||||||||||||
seq2  TAAATTTTAAAAATGGTGGGTGGGGGGATGGGCAGCACTGGA  692