BAC Information

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BAC

Clone NameB6Ng01-054K02
Chromosome3 (Build37)
Map Location 63,722,633 - 63,723,691
singlet/doubletsinglet
Overlap geneE130311K13Rik
Upstream geneLOC676984, LOC666967, Mme, Plch1, LOC100040836
Downstream geneSlc33a1, Gmps, LOC670032, EG56544, 4930518C23Rik, LOC380739, EG637004, EG667031, EG637053, LOC672951, EG639869, EG667060, EG667069, LOC100040918, 4933425M15Rik, LOC670110
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-054K02.bB6Ng01-054K02.g
ACCDH877323DH877324
length1,2591,041
definitionDH877323|Mus musculus domesticus DNA, BAC clone: B6Ng01-054K02, 5' end.DH877324|Mus musculus domesticus DNA, BAC clone: B6Ng01-054K02, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtgttaattttatatccagcctctttgctgaagttgtttat
cagctgtaggagttctctagtggaatttttgggttcacataagtatacta
ttctataatctgcaaatagtgatagcttgacctttacctttccaatctgt
atctctttgacctccttttgttgtccaatttgagaatttgagaatttgag
aagcataggcttttgacaaaattcaacaccccttcatgcaaaaagtcctg
gaatgttcagaaatacaaggcccatacataaacataataaaagcaatata
taggaaaccaaaagccaacatctaactaaatgaagagaaacttgaagcac
tcacattagaatcagggacaagacaaggctaccactctctccctatctat
tcaacatactactcaaagttctagccagaacaattagacaacaaatggag
gtcaaagggaatcaaattggaaaggaaaaagtcaagacttttgtggggga
ggggggcatcagtcttgtttggcgttgtcctaggtctctaacctagccat
gctctggatcctggcatttcaggcagtatcaggtgtcagattcctcttgt
agcatgagtctcagtcaggaccagcaattttttggccacttccacaattt
ctgtgcagcctttaacccagcacaaattataggtaggacaaattttagct
tcaaagttatgtgtctagtttgttgtcctaatacctccactagaagtctt
tcctggtgaagggagattatccgttaacttcacaatcccaatctctagaa
gttttagctataatcaccctcttagattccttggagtttccattatactg
ggtatctagattgttctcaaaatggaccacatttctatttatttgtccct
atattctctccttccatcctcccctaacctaataagtactgttccattcc
acaccctcttcacaaatcagagtcttttctatttctccttcccagcagat
tcatagacaccccttttgagctctccttctgtcacttttcttgtatcttt
ggattgtaacaatggcttatcatttacttacaggctatattccactaaat
aagtaagtacatagcatgaatgtgttcttttttcttggtttacccacact
tcagacaggatttttgggaaccatcgattacaaatttatatagtcactga
ttttaaaaatattataatattgcttccagagtgtgcccttaccatgtgac
cctcctcag
gaattcaagcagaagttactgaatcccatagtgtgcacagcatggttgtt
cacataggaaacaatgtgaggatgtggagtgaaggtgggctttcgagcca
gttggttagtctgggcaagacaatcaccacggcttagagtcctacctgtc
attgagaccagcatccccacaggatagtttcagtatacaagaagtagtgt
gtatggcatttacttttacggcttctgtgtgtgagcacacaggatattgg
agcagatggagcagtatttacctgcggaaacatccttgttctttgtagaa
gactttgttctagttgccaagctacacttctgaaatgacttctagaaaca
aactgacctaaaaactcatgcatatgtaaatatatagggctgatccttta
cttagtaatggccaaaatcaataatttggaagtttttctcctttactttt
tgtatcttatttacttacttttttttttttttttttttttttttgagaca
gggtttctctgtgtagccctgggtgtcctgggacttgctctgtagaccag
gctggccttgaactcctagagatccacctgtctctgcctccagagtgctg
ggattaaaggttcgcattaccaccatctggctattttattattttttatc
aacatgtgtttgtattttatgtgtacaagtgtttgcttgcacgtatgtat
atgcacaccatgtgtggctagtgccctcacaggccagaagaggacataaa
ttcctggaacttcagttacagagctttcagttgccatatggttattgaga
accaaacctaagtcttctacaaagggagtaagtgtcttaaccaatgagcc
ttccctcagtcctatctttttagttatttaattaaaaaacaaacattatt
ttcctacttttattatgtatgtgggtgcatgtgcctgagggttgatctgt
ggagctgcgtgcagtgcttgtcagcttgcttgtgatgggtgctggatcaa
cttccgtccttacaagaaatcttgagctcctgagacttgag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_63722633_63723691
seq2: B6Ng01-054K02.g_68_1108

seq1  GAATTCAAGCAGAAGTTACTGAATCCCATAGTGTGCACAGCATGGTTGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGCAGAAGTTACTGAATCCCATAGTGTGCACAGCATGGTTGTT  50

seq1  CACATAGGAAACAATGTGAGGATGTGGAGTGAAGGTGGGCTTTCGAGCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATAGGAAACAATGTGAGGATGTGGAGTGAAGGTGGGCTTTCGAGCCA  100

seq1  GTTGGTTAGTCTGGGCAAGACAATCACCACGGCTTAGAGTCCTACCTGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTTAGTCTGGGCAAGACAATCACCACGGCTTAGAGTCCTACCTGTC  150

seq1  ATTGAGACCAGCATCCCCACAGGATAGTTTCAGTATACAAGAAGTAGTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGACCAGCATCCCCACAGGATAGTTTCAGTATACAAGAAGTAGTGT  200

seq1  GTATGGCATTTACTTTTACGGCTTCTGTGTGTGAGCACACAGGATATTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGGCATTTACTTTTACGGCTTCTGTGTGTGAGCACACAGGATATTGG  250

seq1  AGCAGATGGAGCAGTATTTACCTGCGGAAACATCCTTGTTCTTTGTAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGATGGAGCAGTATTTACCTGCGGAAACATCCTTGTTCTTTGTAGAA  300

seq1  GACTTTGTTCTAGTTGCCAAGCTACACTTCTGAAATGACTTCTAGAAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTGTTCTAGTTGCCAAGCTACACTTCTGAAATGACTTCTAGAAACA  350

seq1  AACTGACCTAAAAACTCATGCATATGTAAATATATAGGGCTGATCCTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGACCTAAAAACTCATGCATATGTAAATATATAGGGCTGATCCTTTA  400

seq1  CTTAGTAATGGCCAAAATCAATAATTTGGAAGTTTTTCTCCTTTACTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTAATGGCCAAAATCAATAATTTGGAAGTTTTTCTCCTTTACTTTT  450

seq1  TGTATCTTATTTACTTACTTTTTTTTTTTTTTTTTTTTTTTTTTGAGACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCTTATTTACTTACTTTTTTTTTTTTTTTTTTTTTTTTTTGAGACA  500

seq1  GGGTTTCTCTGTGTAGCCCTGGGTGTCCTGGGACTTGCTCTGTAGACCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTCTCTGTGTAGCCCTGGGTGTCCTGGGACTTGCTCTGTAGACCAG  550

seq1  GCTGGCCTTGAACTCCTAGAGATCCACCTGTCTCTGCCTCCAGAGTGCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCCTTGAACTCCTAGAGATCCACCTGTCTCTGCCTCCAGAGTGCTG  600

seq1  GGATTAAAGGTTCGCATTACCACCATCTGGCTATTTTATTATTTTTTATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTAAAGGTTCGCATTACCACCATCTGGCTATTTTATTATTTTTTATC  650

seq1  AACATGTGTTTGTATTTTATGTGTACAAGTGTTTGCTTGCACGTATGTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGTGTTTGTATTTTATGTGTACAAGTGTTTGCTTGCACGTATGTAT  700

seq1  ATGCACACCATGTGTGGCTAGTGCCCTCACAGGCCAGAAGAGGACATTAG  750
      |||||||||||||||||||||||||||||||||||||||||||||| || 
seq2  ATGCACACCATGTGTGGCTAGTGCCCTCACAGGCCAGAAGAGGACA-TAA  749

seq1  ATTCCTGGAACTTCAGTTACAGAGCTTTCAAGTTGCCATATGGTTATTGA  800
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  ATTCCTGGAACTTCAGTTACAGAGCTTTC-AGTTGCCATATGGTTATTGA  798

seq1  GAACCAAACCTAAGTCTTCTACAAAGGTAGTAAGTGTCTTAACCAATGAG  850
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GAACCAAACCTAAGTCTTCTACAAAGGGAGTAAGTGTCTTAACCAATGAG  848

seq1  CCTTCCCTCCAGTCCTATCTTTTTAGTTATTTAATTAAAAAAACAAACAT  900
      |||||||| ||||||||||||||||||||||||||| |||||||||||||
seq2  CCTTCCCT-CAGTCCTATCTTTTTAGTTATTTAATT-AAAAAACAAACAT  896

seq1  TTATTTTTCCTACTTTTATTTATGTATGTGTGTGCATGTGCCTGAGGAGT  950
      |   |||||||||||||| ||||||||||| |||||||||||||||  | 
seq2  T--ATTTTCCTACTTTTA-TTATGTATGTGGGTGCATGTGCCTGAG--GG  941

seq1  TTGATCCTGTGGAGCTGCAGTTCCAGGTGCTTGTCAGC-TGCTTGGTGTG  999
      ||||| |||||||||||| || |   |||||||||||| ||||||   ||
seq2  TTGAT-CTGTGGAGCTGC-GTGC--AGTGCTTGTCAGCTTGCTTGTGATG  987

seq1  GGTGCTGGGAATCAAACTCACGTCCTTTACAAGAATACTATGAGCTCCTG  1049
      ||||||||  ||| ||||  ||||| |||||||||  || ||||||||||
seq2  GGTGCTGG--ATC-AACTTCCGTCC-TTACAAGAAATCT-TGAGCTCCTG  1032

seq1  AGCACTTGAG  1059
      || |||||||
seq2  AG-ACTTGAG  1041