BAC Information

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BAC

Clone NameB6Ng01-054M14
Chromosome3 (Build37)
Map Location 79,299,978 - 79,428,233
singlet/doubletdoublet
Overlap geneLOC100041793, LOC667613, Ppid, Etfdh
Upstream geneLOC383883, LOC100041748, LOC100041716, LOC100041725, LOC100041766, Rapgef2, LOC100041741
Downstream gene4930579G24Rik, Rxfp1, Tmem144, 1110032E23Rik, EG626797
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-054M14.bB6Ng01-054M14.g
ACCDH877437DH877438
length889907
definitionDH877437|Mus musculus domesticus DNA, BAC clone: B6Ng01-054M14, 5' end.DH877438|Mus musculus domesticus DNA, BAC clone: B6Ng01-054M14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,299,978 - 79,300,775)(79,427,618 - 79,428,233)
sequence
gaattctttgaaactccgccagggatgtctggatttgaggatgaaggggg
aaagagccatgtgtgctttggggtaggggggggtatattgaaattccaat
atactctctgttgtaagtacctccccatcataatcactcaaatttataac
tatgtttggtttatcacatatgattaacctctccttcatatttcatagct
caaaatgtggagtactgttgaggtcagatttgaacttacactgaacctat
gaaacagatagtatgatgagcctaagaatgtcccactggcaactttgtca
atttaataactagaaggcttgcaaggggcatgtctcatgtctggctcctt
tgggattcgggtgtttctccctaagggatgaaatgcccgaggctcctcag
cccccacaggtatcagagctattgctagctgcaggatacaaacaggtgtc
caaataacccaaacttgccacctatttctatgaagtcagaaaggagccag
cctttatatttacatcatccttaactactaactctctttggaagaatatt
ctacgtatttatattaaaattaactttcttttttcaaatacagactcatc
ccatagccctggctgcttgaaacttgctacatataccaggctgtcctcaa
atacatctgtctctgctccctgagtgttaagagttgaaggtgtataccac
catatatgataggaaggggtgtttttaattactgtggacttcctttcaaa
cccagaagcttttgatgccaaactctgttcccttggtaatgtgtacgtgc
actcgagcactcacccgtgagaggcatgtgtgtgcacacccgcactcacc
gttagacgcagggatggggcgtactcagccgtgacaggc
gaattctaaccaggttccagggaggcagctgaccttctgtcggaaggtta
ataaatactaagattgggacaaaagcagccatgttcctcttttttcctca
tggctctgataatggaagatacgaccccccactttgctttctaataaacc
actgtacagttcatgtggccctgatgggttccttgtctttgtcaccatga
gctgtttatatcctaaaaaagcctaatgaattgtgtgtgtgcatgtaaat
gtgcgtgtgtgttatgttgcatgtgtgtgggggggcacaaccatctataa
tgggattctatgccctctccttgtgtgtctgaaggcagcaacagtgtatt
tacatatataaaataaataaatcttaaataaaacaacaacaaaaaaaaaa
acaacaaaaaacacattatggggctggagagatggctcagcagtcaagag
cacctgatgctcttccagaggatccaggttcaattcccagcacccacatg
tcagctcacaactgtctgttactctaagtatagggatccaaccccctcac
acagacttgtgtgcaggcaaaacatgaatgcataaaataaaaataaaaat
aaatgatttaaaagagttgaaattttgcttcatgagcaaaagttagctgt
atcactcataagaaaaataattttccattttgatttgtgtttaattattt
aagaatattcattcagagcttgggcagtggtagcactttgcctttaatcc
cagcacttggaagggcagaggcagtggatttctgagttcgaggccagcct
tggtttacagattgagttccaggacagcctgggctacacagagaaactca
ttcagcttagagatttttcagtctacaacagaatggaaactaattcttaa
aaaatac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_79299978_79300775
seq2: B6Ng01-054M14.b_143_934

seq1  AATATACTCTTATATGTAAGTACCTCAAAATCATAATCACTCAAATTTAT  50
      ||||||||||    ||||||||||||   |||||||||||||||||||||
seq2  AATATACTCTCTGTTGTAAGTACCTCCCCATCATAATCACTCAAATTTAT  50

seq1  AACTATCATCATTTTAGCACATATGAATAAACTATAATCGATATATCAGA  100
      ||||||  |   |||| ||||||||| ||| || |  |  |||| ||| |
seq2  AACTATGTTTGGTTTATCACATATGATTAACCTCTCCTTCATATTTCATA  100

seq1  GCTGCCAAGCACAATTACTGTTGAGGTCAGATTTGAACTTACACTGAACC  150
      |||   ||     | |||||||||||||||||||||||||||||||||||
seq2  GCTCAAAATGTGGAGTACTGTTGAGGTCAGATTTGAACTTACACTGAACC  150

seq1  TATGAAACAGATAGTATGATGAGCCTAAGAATGTCCCACTGGCAACTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAACAGATAGTATGATGAGCCTAAGAATGTCCCACTGGCAACTTTG  200

seq1  TTCAATTTAATAACTAGAAGGCTTGCAAGGGGCATGTCTCCATGTCTGGC  250
       |||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  -TCAATTTAATAACTAGAAGGCTTGCAAGGGGCATGTCT-CATGTCTGGC  248

seq1  TCCTTTGGGATTCGGGTGTTTCTCCCTAAGGGATGAAATGCCCGAGGCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTGGGATTCGGGTGTTTCTCCCTAAGGGATGAAATGCCCGAGGCTC  298

seq1  CTCAGCCCCCACAGGTATCAGAGCTATTGCTAGCTGCAGGATACAAACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCCCCCACAGGTATCAGAGCTATTGCTAGCTGCAGGATACAAACAG  348

seq1  GTGTCCAAATAACCCAAGCTTGCCACCTAGCACGATGAAGTCAGAAAGGA  400
      ||||||||||||||||| |||||||||||   | ||||||||||||||||
seq2  GTGTCCAAATAACCCAAACTTGCCACCTATTTCTATGAAGTCAGAAAGGA  398

seq1  GCCAGCCTTTAGATTTACATCATCCTTAACTACTAACTCTCTTTAAGAAG  450
      ||||||||||| ||||||||||||||||||||||||||||||||  ||||
seq2  GCCAGCCTTTATATTTACATCATCCTTAACTACTAACTCTCTTT-GGAAG  447

seq1  AATATTCTACTTATTTATATTAAAATTAGCTTTCTTTTTTCAGATACGGT  500
      |||||||||| ||||||||||||||||| ||||||||||||| |||| | 
seq2  AATATTCTACGTATTTATATTAAAATTAACTTTCTTTTTTCAAATACAGA  497

seq1  CTCATCCCATAGCCCTGGCTGCTTGAAACTTGCTACATATACCAGGCTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCCCATAGCCCTGGCTGCTTGAAACTTGCTACATATACCAGGCTGT  547

seq1  CCTCAAATACATCTGTCTCTGCTCCCTGAGTGTTAAGAGTTGAAGGTGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAAATACATCTGTCTCTGCTCCCTGAGTGTTAAGAGTTGAAGGTGTA  597

seq1  TACCACCATATAGGATAGGAA-GGGTGTTTTTAATTACTGTGGACTTCCT  649
      |||||||||||| |||||||| ||||||||||||||||||||||||||||
seq2  TACCACCATATATGATAGGAAGGGGTGTTTTTAATTACTGTGGACTTCCT  647

seq1  TTCAAAGCCAGAAGCTTTTGATGCCAGGCTCTGTTCCAGTGGTAATGTGT  699
      |||||| |||||||||||||||||||  |||||||||  |||||||||||
seq2  TTCAAACCCAGAAGCTTTTGATGCCAAACTCTGTTCCCTTGGTAATGTGT  697

seq1  ACGTGCACTCTAGCACTCAGCCGTGAGAGGCAGTGTGTGTGCACACCAGC  749
      |||||||||| |||||||| |||||||||||| |||||||||||||| ||
seq2  ACGTGCACTCGAGCACTCACCCGTGAGAGGCA-TGTGTGTGCACACCCGC  746

seq1  ACTCAGCCGTGAGAGGCAGTGTGTGTGCCTGTACTCAGCCGTGAGAGGC  798
      ||||| |||| ||| |||| |   | ||  |||||||||||||| ||||
seq2  ACTCA-CCGTTAGACGCAGGGATGGGGC--GTACTCAGCCGTGACAGGC  792

seq1: chr3_79427618_79428233
seq2: B6Ng01-054M14.g_351_972 (reverse)

seq1  GTATCTTTTTAAGAATTAGTTTCCA-TCTGTTGTAGACTGAAAAATCTCT  49
      |||| |||||||||||||||||||| ||||||||||||||||||||||||
seq2  GTAT-TTTTTAAGAATTAGTTTCCATTCTGTTGTAGACTGAAAAATCTCT  49

seq1  AAGCTGAATGAGTTTCTCTGTGTAGCCCAGGCTGTCCTGGAACTCAATCT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGAATGAGTTTCTCTGTGTAGCCCAGGCTGTCCTGGAACTCAATCT  99

seq1  GTAAACC-AGGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTG-CCTTC  147
      ||||||| |||||||||||||||||||||||||| ||||||||| |||||
seq2  GTAAACCAAGGCTGGCCTCGAACTCAGAAATCCA-CTGCCTCTGCCCTTC  148

seq1  CAAGTGCTGGGATTAAAGGC-AAGTGCTACCACTGCCC-AGCTCTGAATG  195
      |||||||||||||||||||| ||||||||||||||||| |||||||||||
seq2  CAAGTGCTGGGATTAAAGGCAAAGTGCTACCACTGCCCAAGCTCTGAATG  198

seq1  AATATTCTT-AATAATT-AACACAAATCAAAATGGAAAATTATTTTTCTT  243
      ||||||||| ||||||| ||||||||||||||||||||||||||||||||
seq2  AATATTCTTAAATAATTAAACACAAATCAAAATGGAAAATTATTTTTCTT  248

seq1  ATGAGTGATACAGCTAACTTTTGCTCATGAAGCAAAATTTCAACTCTTTT  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTGATACAGCTAACTTTTGCTCATGAAGCAAAATTTCAACTCTTTT  298

seq1  AAATCATTTA-TTTTATTTTTATTTTATGCATTCATGTTTTGCCTGCACA  342
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AAATCATTTATTTTTATTTTTATTTTATGCATTCATGTTTTGCCTGCACA  348

seq1  CAAGTCTGTGTGAGGGGGTTGGATCCCTATACTTAGAGTAACAGACAGTT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCTGTGTGAGGGGGTTGGATCCCTATACTTAGAGTAACAGACAGTT  398

seq1  GTGAGCTGACATGTGGGTGCTGGGAATTGAACCTGGATCCTCTGGAAGAG  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCTGACATGTGGGTGCTGGGAATTGAACCTGGATCCTCTGGAAGAG  448

seq1  CATCAGGTGCTCTTGACTGCTGAGCCATCTCTCCAGCCCCATAATGTGTT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGGTGCTCTTGACTGCTGAGCCATCTCTCCAGCCCCATAATGTGTT  498

seq1  TTTTGTTGTTTTTTTTTTTGTTGTTGTTTTATTTAAGATTTATTTATTTT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTGTTTTTTTTTTTGTTGTTGTTTTATTTAAGATTTATTTATTTT  548

seq1  ATATATGTAAATACACTGTTGCTGCCTTCAGACACACAAGGAGAGGGCAT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATGTAAATACACTGTTGCTGCCTTCAGACACACAAGGAGAGGGCAT  598

seq1  AGAATCCCATTATAGATGGTTGTG  616
      ||||||||||||||||||||||||
seq2  AGAATCCCATTATAGATGGTTGTG  622