BAC Information

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BAC

Clone NameB6Ng01-055G22
Chromosome19 (Build37)3 (Build37)
Map Location 20,911,320 - 20,911,842145,462,204 - 145,463,361
singlet/doubletsingletsinglet
Overlap geneTmc1
Upstream geneLOC100042218, LOC100041541, Anxa1, LOC100041560, 1500015L24Rik, E030003E18Rik, EG626549, Aldh1a1, Aldh1a7
Downstream geneLOC100042287, LOC100042294, LOC100041602, LOC100041613, Zfand5, Gda, LOC100041633, 1110059E24Rik, 5730446C15Rik, Tmem2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-055G22.bB6Ng01-055G22.g
ACCDH877882DH877883
length6481,134
definitionDH877882|Mus musculus domesticus DNA, BAC clone: B6Ng01-055G22, 5' end.DH877883|Mus musculus domesticus DNA, BAC clone: B6Ng01-055G22, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(20,911,320 - 20,911,842)(145,462,204 - 145,463,361)
sequence
gaattccttgtttttcacgcaatctgtctatcatgatttaaaataaagtt
gcagtggatgatccaactggcctgaatatgctgtgttcctttgctgaggg
gagttggagggtgagggggggaattgaaagctgcaattgcgctggtccat
agtcacccaagtatcgccacaaaaagagagaaagctagaaggttttgatt
atcttgtcactaggaattaacttacgtgtttatgtaatatttactgagaa
cttagaatttggcaaatacaacacaagagatagaggagaaaactggatta
ataccctccttaagagttctgcatgcaaaatatgcacattagaagtattg
gtgatttcgtataattctaaataaatactccctgtgaaaagcgaaacgct
atcccaaggatggtaagatctaaatttcacaatttttagcagctcattaa
tttatagtaactgccaaacaactattttgtaggccaaaaaaaaaaaaaag
ccaaaaagctacaacttttagacaatggaagtgggtttttatgaagcatg
ccactgaagtgagcagttgttctgcaggaactgagtctgtctaccatttc
catactgaggttttttgtggttttggttttttggttgttatgttgtta
gaattcatggcacgcagggaggagtcaaaggcactccacttagaagcaga
atgaatggaaacccaaaccagccataagcgcacaagaagatcatagatta
gacataaacaggaaagccaccacaggattccatttcatgttcgctacact
gaagacaccaaatcaaaaaaggatttggagtcttgggaggatgtggtcca
caggcaccctggcctttgcctgtgggaacatcagtgagacagtcacttag
gaagatattttagcccaatgtaatatatctgaaacctctacaacccagct
cttctcctaggaatcgatctgaaaggatctcctgtacctgtggcctgaga
catgtgaagatctattgattgcaggattggtcacagcagcaagaacctag
aaacaactctgatgtcactaaactcaaggagaagaagtcacagagtcata
cagactcaagtcacagcaaattcagtgggactgaattttataactttggg
gtgacacatatgtcatcggttgtaatgaataataagggcaggtagagtcc
aaaggactgtgggaaggaatacactctaggagaggatacgggagcctccc
aagtatcttgtccatacgcttgcagagcaagcactttaccaagacacctc
tccagcccctagttacttgtgcagttactgacttttgaaatttattttta
taaacaactatctccaatttctgcagaggaattcagaattctgaggtcag
ctttagagcaggctggacagcctgcaagaatgcaaagtcctgggatcgac
tctagagcagactgggcagctggtgagactacagaaccccggagtcagct
ctagagcaggctgggcagctggtgagaatacagaactcctgggtcagctc
tggagtaagctggacagctgctgtttctatcgagttcttatagagtttca
gtaggggtataagtctgcatggaacttcatggagatcacactggaattta
ttttaattatacaatctctgtggatgaacccagcagctatgaacatggaa
atactaagctgagggattatgtaaatattgcaatctgaaacagctgattt
ttaaggttgccgagacgttcctcgctcttattat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_20911320_20911842
seq2: B6Ng01-055G22.b_169_692

seq1  TTGAAAGCTGCAATTGCGCTGGTCCATAGTCACCCAAGTATCGCCACAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAGCTGCAATTGCGCTGGTCCATAGTCACCCAAGTATCGCCACAAA  50

seq1  AAGAGAGAAAGCTAGAAGGTTTTGATTATCTTGTCACTAGGAATTAACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAGAAAGCTAGAAGGTTTTGATTATCTTGTCACTAGGAATTAACTT  100

seq1  ACGTGTTTATGTAATATTTACTGAGAACTTAGAATTTGGCAAATACAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGTTTATGTAATATTTACTGAGAACTTAGAATTTGGCAAATACAACA  150

seq1  CAAGAGATAGAGGAGAAAACTGGATTAATACCCTCCTTAAGAGTTCTGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGATAGAGGAGAAAACTGGATTAATACCCTCCTTAAGAGTTCTGCA  200

seq1  TGCAAAATATGCACATTAGAAGTATTGGTGATTTCGTATAATTCTAAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAATATGCACATTAGAAGTATTGGTGATTTCGTATAATTCTAAATA  250

seq1  AATACTCCCTGTGAAAAGCGAAACGCTATCCCAAGGATGGTAAGATCTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTCCCTGTGAAAAGCGAAACGCTATCCCAAGGATGGTAAGATCTAA  300

seq1  ATTTCACAATTTTTAGCAGCTCATTAATTTATAGTAACTGCCAAACAACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCACAATTTTTAGCAGCTCATTAATTTATAGTAACTGCCAAACAACT  350

seq1  ATTTTGTAGGCCAAAAAAAAAAAAAAGCCAAAAAGCTACAACTTTTAGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTAGGCCAAAAAAAAAAAAAAGCCAAAAAGCTACAACTTTTAGAC  400

seq1  AATGGAAGTGGGTTTTTATGAAGCATGCCACTGAAGTGAGCAGTTGTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAAGTGGGTTTTTATGAAGCATGCCACTGAAGTGAGCAGTTGTTCT  450

seq1  GCAGGAACTGAGTCTGTCTACCATTTCCATACTGAGGTTTTTTGGGGTTT  500
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GCAGGAACTGAGTCTGTCTACCATTTCCATACTGAGGTTTTTTGTGGTTT  500

seq1  TGG-TTTTTGGTTGTTTTGTTGTT  523
      ||| |||||||||||| |||||||
seq2  TGGTTTTTTGGTTGTTATGTTGTT  524

seq1: chr3_145462204_145463361
seq2: B6Ng01-055G22.g_68_1201 (reverse)

seq1  ATAAAAAGA-CGAGGAACGTCTCTGAGACGACCCTTTAAAAAAAATCAGC  49
      |||| |||| ||||||||||||| |     | ||||    ||||||||||
seq2  ATAATAAGAGCGAGGAACGTCTCGG----CAACCTT----AAAAATCAGC  42

seq1  TTGGTCTCAGATTGGAATATTTTACACTTATTCCCCTTCAGCTTAGTAAT  99
      |  || |||||||| |||||||   || || ||||  ||||||||||| |
seq2  T--GTTTCAGATTGCAATATTT---ACATAATCCC--TCAGCTTAGTATT  85

seq1  TTCATTGTTTCATAGCTGCTGGGTTTCATCCACAGAGATTGTATAATTAA  149
      | |||   ||||||||||||||| ||||||||||||||||||||||||||
seq2  TCCAT--GTTCATAGCTGCTGGG-TTCATCCACAGAGATTGTATAATTAA  132

seq1  AAATTAAATTCCAGTGTGATCTTCCATGAAGTTCCATGCAGACTTATACC  199
      ||  ||||||||||||||||| |||||||||||||||||||||||||| |
seq2  AA--TAAATTCCAGTGTGATC-TCCATGAAGTTCCATGCAGACTTATA-C  178

seq1  CCCTACTGAAAACTCTATAAGAACTCGATTAGAAAACAGCAGCTGTCCAG  249
      |||||||| ||||||||||||||||||| ||| |||||||||||||||||
seq2  CCCTACTG-AAACTCTATAAGAACTCGA-TAG-AAACAGCAGCTGTCCAG  225

seq1  CCTACTCCAGAGCTGACCCAGGAGTTCTGTATTCTCACCAGCTGCCCAGC  299
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTCCAGAGCTGACCCAGGAGTTCTGTATTCTCACCAGCTGCCCAGC  275

seq1  CTGCTCTAGAGCTGACTCCGGGGTTCTGTAGTCTCACCAGCTGCCCAGTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCTAGAGCTGACTCCGGGGTTCTGTAGTCTCACCAGCTGCCCAGTC  325

seq1  TGCTCTAGAGTCGATCCCAGGACTTTGCATTCTTGCAGGCTGTCCAGCCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTAGAGTCGATCCCAGGACTTTGCATTCTTGCAGGCTGTCCAGCCT  375

seq1  GCTCTAAAGCTGACCTCAGAATTCTGAATTCCTCTGCAGAAATTGGAGAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTAAAGCTGACCTCAGAATTCTGAATTCCTCTGCAGAAATTGGAGAT  425

seq1  AGTTGTTTATAAAAATAAATTTCAAAAGTCAGTAACTGCACAAGTAACTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTTTATAAAAATAAATTTCAAAAGTCAGTAACTGCACAAGTAACTA  475

seq1  GGGGCTGGAGAGGTGTCTTGGTAAAGTGCTTGCTCTGCAAGCGTATGGAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTGGAGAGGTGTCTTGGTAAAGTGCTTGCTCTGCAAGCGTATGGAC  525

seq1  AAGATACTTGGGAGGCTCCCGTATCCTCTCCTAGAGTGTATTCCTTCCCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATACTTGGGAGGCTCCCGTATCCTCTCCTAGAGTGTATTCCTTCCCA  575

seq1  CAGTCCTTTGGACTCTACCTGCCCTTATTATTCATTACAACCGATGACAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCTTTGGACTCTACCTGCCCTTATTATTCATTACAACCGATGACAT  625

seq1  ATGTGTCACCCCAAAGTTATAAAATTCAGTCCCACTGAATTTGCTGTGAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTCACCCCAAAGTTATAAAATTCAGTCCCACTGAATTTGCTGTGAC  675

seq1  TTGAGTCTGTATGACTCTGTGACTTCTTCTCCTTGAGTTTAGTGACATCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTCTGTATGACTCTGTGACTTCTTCTCCTTGAGTTTAGTGACATCA  725

seq1  GAGTTGTTTCTAGGTTCTTGCTGCTGTGACCAATCCTGCAATCAATAGAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGTTTCTAGGTTCTTGCTGCTGTGACCAATCCTGCAATCAATAGAT  775

seq1  CTTCACATGTCTCAGGCCACAGGTACAGGAGATCCTTTCAGATCGATTCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACATGTCTCAGGCCACAGGTACAGGAGATCCTTTCAGATCGATTCC  825

seq1  TAGGAGAAGAGCTGGGTTGTAGAGGTTTCAGATATATTACATTGGGCTAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGAAGAGCTGGGTTGTAGAGGTTTCAGATATATTACATTGGGCTAA  875

seq1  AATATCTTCCTAAGTGACTGTCTCACTGATGTTCCCACAGGCAAAGGCCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCTTCCTAAGTGACTGTCTCACTGATGTTCCCACAGGCAAAGGCCA  925

seq1  GGGTGCCTGTGGACCACATCCTCCCAAGACTCCAAATCCTTTTTTGATTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGCCTGTGGACCACATCCTCCCAAGACTCCAAATCCTTTTTTGATTT  975

seq1  GGTGTCTTCAGTGTAGCGAACATGAAATGGAATCCTGTGGTGGCTTTCCT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTCTTCAGTGTAGCGAACATGAAATGGAATCCTGTGGTGGCTTTCCT  1025

seq1  GTTTATGTCTAATCTATGATCTTCTTGTGCGCTTATGGCTGGTTTGGGTT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATGTCTAATCTATGATCTTCTTGTGCGCTTATGGCTGGTTTGGGTT  1075

seq1  TCCATTCATTCTGCTTCTAAGTGGAGTGCCTTTGACTCCTCCCTGCGTGC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTCATTCTGCTTCTAAGTGGAGTGCCTTTGACTCCTCCCTGCGTGC  1125

seq1  CATGAATTC  1158
      |||||||||
seq2  CATGAATTC  1134