BAC Information

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BAC

Clone NameB6Ng01-056M09
Chromosome3 (Build37)4 (Build37)
Map Location 6,924,059 - 6,925,23021,058,127 - 21,058,787
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100041193, EG620570, LOC100041214, LOC383818, 1700008P02Rik, LOC100039349, Olfr289-ps1
Downstream geneEG667801, Pkia, LOC667807, 3110050N22Rik, Il7, LOC620822
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-056M09.bB6Ng01-056M09.g
ACCDH878831DH878832
length1,155971
definitionDH878831|Mus musculus domesticus DNA, BAC clone: B6Ng01-056M09, 5' end.DH878832|Mus musculus domesticus DNA, BAC clone: B6Ng01-056M09, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(6,924,059 - 6,925,230)(21,058,127 - 21,058,787)
sequence
gaattcagtcataccgaacttgggccacatccagcagatgttttccacag
attcaaaggagatctgagagagaggttaagattaactcaataatttgggg
atgaatatcttaaagcgtggaaataattttttaaggcagagcaaaaagag
aggagggtaaggattgagtgaatttgagagtctggagtctgatttagatg
gctatttgacaattaattacatttgtcataaaaagtaactcaaaaaattc
ttaaataagaattagacttttatagactcaaattctatacatctcaatga
acatacagttagatcaggcattcttaagcttggatccctacatcataatt
tatactttcactatcaaatatatttatatacatgtatctaccactaaaac
atacaaaaacacatcattgatttaaaactagaaaatcaatgagaattata
cattgtttcatgaatcatgtctattgcctacatttagtccttcctcatct
cctaacacttcaatgttccttttctatcctttacattttacactatgccc
acatgtatatttgtcttcaaatttgttattacatttttctttagagctat
ataatattcatatgtacacacacaaaattttcttcataatttttattatc
cattcattcatctactgatgaatatgtaggttgatttcagatctttggta
cagtctataaagcagtaataagtctgggagtgatggctattaactattta
ttacaataccaaagaggcaaagagagaaggtagctatgtttactctagaa
aggctcactatcttcatcatatttgtatttgtccgtcactgtcataactt
gaccttggtcatttctactatcatacccatgcaattcagtatgatagtga
caaacaagggcttctcctactctataagccattgttgtcagagctacagc
gtattcctgtgaacaaagtgactctaatgtgagaaaaaaatgccttacca
ggtttgcttcctatttttgcattacctctacattaaccattattgcctca
gtgaatattctgcatcattatgcactggctttcagccccactccagcata
gatgtttaggtctaataatactgaatccgaaaatgtacaagaatactggc
tgttt
gaattcacgcagttgaatccttctcaacagtctgttttacgggaaccttt
atgaccatgacccgcagttctggttccggaatgaggaatcttccttgcgc
cggtgatggtaaccgtcccaggtttttcttgtcccgggttttctcgtccc
aggtcttctcgtcccgggttttctcgtcccaggtcttctcgtcccgggtc
tcagcaccaactcttacacgcattctcgcgaccggccaggaagaacacaa
caaaccggaatcttctgcggcaaaagctttattgcttacatcttcaggag
caagaaagcaagacagcaagagagcaagagagcaagagagagcaagaaag
caagaaaaagaacaagaacaagaaagcaagagagcaggagtgagaaaaca
agagaaagaatggcaaaaccccgtcccttttaaggagaattatcctccgc
ctaggacgtattactccctgattggctgcagcccatcggcccagttgtca
tcacgagaaaggcagaacacatggcgggaaaactgcccctgcacgtgtgc
agattatgtttaccacttagaacacagctgtcagcgccatcttataatgg
caaatgtgagggcggctcccaacaataaaaccagaaacattgaatctgat
agaagagaaaatgggaatagccttgaatgccttggtgcaggagacaactt
tctgaatagaacaccaatacttcaggcactaataacaaaaattaataaat
gggacctcatgaaactgaaaagcttctgtaaggcaaaagacactatcagt
aggacaaaatgacatcctacagaatgagaaaaaatattcacatctgagag
ggtgctgattccaaaacttataaataacatagaaataaattaaatcatac
attatatagatctaaacagaacagagattctcaacagaggatcttaaatg
gctgagatcacttaaagaatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_6924059_6925230
seq2: B6Ng01-056M09.b_47_1201

seq1  GAATTCAGTCATACCGAACTTGGGCCACATCCAGCAGATGTTTTCCACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTCATACCGAACTTGGGCCACATCCAGCAGATGTTTTCCACAG  50

seq1  ATTCAAAGGAGATCTGAGAGAGAGGTTAAGATTAACTCAATAATTTGGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAAGGAGATCTGAGAGAGAGGTTAAGATTAACTCAATAATTTGGGG  100

seq1  ATGAATATCTTAAAGCGTGGAAATAATTTTTTAAGGCAGAGCAAAAAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATATCTTAAAGCGTGGAAATAATTTTTTAAGGCAGAGCAAAAAGAG  150

seq1  AGGAGGGTAAGGATTGAGTGAATTTGAGAGTCTGGAGTCTGATTTAGATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGGTAAGGATTGAGTGAATTTGAGAGTCTGGAGTCTGATTTAGATG  200

seq1  GCTATTTGACAATTAATTACATTTGTCATAAAAAGTAACTCAAAAAATTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTTGACAATTAATTACATTTGTCATAAAAAGTAACTCAAAAAATTC  250

seq1  TTAAATAAGAATTAGACTTTTATAGACTCAAATTCTATACATCTCAATGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATAAGAATTAGACTTTTATAGACTCAAATTCTATACATCTCAATGA  300

seq1  ACATACAGTTAGATCAGGCATTCTTAAGCTTGGATCCCTACATCATAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACAGTTAGATCAGGCATTCTTAAGCTTGGATCCCTACATCATAATT  350

seq1  TATACTTTCACTATCAAATATATTTATATACATGTATCTACCACTAAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTTTCACTATCAAATATATTTATATACATGTATCTACCACTAAAAC  400

seq1  ATACAAAAACACATCATTGATTTAAAACTAGAAAATCAATGAGAATTATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAAAACACATCATTGATTTAAAACTAGAAAATCAATGAGAATTATA  450

seq1  CATTGTTTCATGAATCATGTCTATTGCCTACATTTAGTCCTTCCTCATCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTTTCATGAATCATGTCTATTGCCTACATTTAGTCCTTCCTCATCT  500

seq1  CCTAACACTTCAATGTTCCTTTTCTATCCTTTACATTTTACACTATGCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAACACTTCAATGTTCCTTTTCTATCCTTTACATTTTACACTATGCCC  550

seq1  ACATGTATATTTGTCTTCAAATTTGTTATTACATTTTTCTTTAGAGCTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTATATTTGTCTTCAAATTTGTTATTACATTTTTCTTTAGAGCTAT  600

seq1  ATAATATTCATATGTACACACACAAAATTTTCTTCATAATTTTTATTATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATATTCATATGTACACACACAAAATTTTCTTCATAATTTTTATTATC  650

seq1  CATTCATTCATCTACTGATGAATATGTAGGTTGATTTCAGATCTTTGGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCATTCATCTACTGATGAATATGTAGGTTGATTTCAGATCTTTGGTA  700

seq1  CAGTCTATAAAGCAGTAATAAGTCTGGGAGTGATGGCTATTAACTATTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTATAAAGCAGTAATAAGTCTGGGAGTGATGGCTATTAACTATTTA  750

seq1  TTACAATACCAAAGAGGCAAAGAGAGAAGGTAGCTATGTTTACTCTAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAATACCAAAGAGGCAAAGAGAGAAGGTAGCTATGTTTACTCTAGAA  800

seq1  AGGCTCACTATCTTCATCATATTTGTATTTGTCCGTCACTGTCATAACTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCACTATCTTCATCATATTTGTATTTGTCCGTCACTGTCATAACTT  850

seq1  GACCTTGGTCATTTCTACTATCATACCCATGCAATTCAGTATGATAGTGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTGGTCATTTCTACTATCATACCCATGCAATTCAGTATGATAGTGA  900

seq1  CAAACAAGGGCTTCTCCTACTCTATAAGCCATTGTTGTCAGAGCTACAGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CAAACAAGGGCTTCTCCTACTCTATAAGCCATTGTTGTCAGAGCTACAG-  949

seq1  CGGTATTCCTGTGAACAAAGTGAACTCTAATGTGAGACAAAAATGCCTTA  1000
        |||||||||||||||||||| |||||||||||||| ||||||||||||
seq2  -CGTATTCCTGTGAACAAAGTG-ACTCTAATGTGAGAAAAAAATGCCTTA  997

seq1  CCAAGGTTTGCTTCCTATTTTTTGCCATTA-CTCTACATTTAACCATTAT  1049
      || |||||||||||||||||||   ||||| ||||||| |||||||||| 
seq2  CC-AGGTTTGCTTCCTATTTTT--GCATTACCTCTACA-TTAACCATTA-  1042

seq1  TTGCCTCAAGTGATATTTCTGCATCCATAATGCACTGGCCTTTCAGCCCA  1099
      ||||||| |||||   |||||||| ||| ||||||||| |||||||||| 
seq2  TTGCCTC-AGTGAATATTCTGCAT-CATTATGCACTGG-CTTTCAGCCC-  1088

seq1  CACT-CAGCAT-GATGTATAGGGTCATATAAATACTGAGTCAGAAAAAAT  1147
      |||| |||||| ||||| || |||| ||  |||||||| || |  |||||
seq2  CACTCCAGCATAGATGTTTA-GGTC-TAATAATACTGAATCCG--AAAAT  1134

seq1  GTTAAACAAGATAACTGGCTAGTTT  1172
      ||   ||||||  ||||||| ||||
seq2  GT---ACAAGAATACTGGCT-GTTT  1155

seq1: chr4_21058127_21058787
seq2: B6Ng01-056M09.g_68_692

seq1  GAATCCACGCAGTTGAATCCTTTTCAACAGTCTGTTTTTCGGGAACCTTT  50
      |||| ||||||||||||||||| ||||||||||||||| |||||||||||
seq2  GAATTCACGCAGTTGAATCCTTCTCAACAGTCTGTTTTACGGGAACCTTT  50

seq1  ATGACCGTGACCCGCAGTTCTGGTTCCGGAATGAGGGATCTTCCTTGCGC  100
      |||||| ||||||||||||||||||||||||||||| |||||||||||||
seq2  ATGACCATGACCCGCAGTTCTGGTTCCGGAATGAGGAATCTTCCTTGCGC  100

seq1  CGGTGATGGTAACCGTCCCAGG-TTTTCTTGTCCCAGGTCTTCTCGTCCC  149
      |||||||||||||||||||||| |||||||||||| ||| ||||||||||
seq2  CGGTGATGGTAACCGTCCCAGGTTTTTCTTGTCCCGGGTTTTCTCGTCCC  150

seq1  AGGTCTTCTCGTCCCGGGATTTCTCGTCCCAGGTCTTCACGTCGCGGGTC  199
      |||||||||||||||||| ||||||||||||||||||| |||| ||||||
seq2  AGGTCTTCTCGTCCCGGGTTTTCTCGTCCCAGGTCTTCTCGTCCCGGGTC  200

seq1  TCAGCACCAACTCTTACACGCGTTCTCGCGACCAGCCAGGAAAGACGCAA  249
      ||||||||||||||||||||| ||||||||||| ||||||||  || |||
seq2  TCAGCACCAACTCTTACACGCATTCTCGCGACCGGCCAGGAAGAACACAA  250

seq1  CAAACCAGAATCTTCTGCGGCAAAA-CTTTATTGCTTACATCTTCAGGAG  298
      |||||| |||||||||||||||||| ||||||||||||||||||||||||
seq2  CAAACCGGAATCTTCTGCGGCAAAAGCTTTATTGCTTACATCTTCAGGAG  300

seq1  CAAGAGTGCAAGAGAGCAAGAAAAAGAATAAGAGAGCAAGAAAGCAAGAA  348
      |||||  |||||| |||            |||||||||||| ||||||  
seq2  CAAGAAAGCAAGACAGC------------AAGAGAGCAAGAGAGCAAG--  336

seq1  AAAGAACAAGAA--CAAGAAAAAGAACAAGAACAAGAAAGCAAGAGAGAG  396
      | ||| ||||||  ||||||||||||||||||||||||||||||||    
seq2  AGAGAGCAAGAAAGCAAGAAAAAGAACAAGAACAAGAAAGCAAGAG----  382

seq1  AAAGAACAAGAAAGCAAGAGGAAGAACAAGAGCAAGAGAGAGAAAAAGAA  446
                  |||| |||  ||||    | ||||||      ||||||
seq2  ------------AGCAGGAGTGAGAA----AACAAGAG------AAAGAA  410

seq1  TGGCAAAACCCCGTCCCTTTTAAGGAGAATTATCCTCCGCCTAGGACGTA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAAAACCCCGTCCCTTTTAAGGAGAATTATCCTCCGCCTAGGACGTA  460

seq1  TTACTCCCTGATTGGCTGCAGCCCATCAGCCCAGTTGTCATCACGGGAAA  546
      ||||||||||||||||||||||||||| ||||||||||||||||| ||||
seq2  TTACTCCCTGATTGGCTGCAGCCCATCGGCCCAGTTGTCATCACGAGAAA  510

seq1  GGCAGAACACATGGCGGGAAAACTGCCCCTGCACGTGTGCAGATTATGTT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAACACATGGCGGGAAAACTGCCCCTGCACGTGTGCAGATTATGTT  560

seq1  TACCACTTAGAACACAGCTGTCAGCGCCATCTTATAATGGCAAATGTGAG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACTTAGAACACAGCTGTCAGCGCCATCTTATAATGGCAAATGTGAG  610

seq1  GGCGGCTCCCCACAA  661
      |||||||||| ||||
seq2  GGCGGCTCCCAACAA  625