BAC Information

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BAC

Clone NameB6Ng01-056N23
Chromosome3 (Build37)
Map Location 119,516,704 - 119,642,636
singlet/doubletdoublet
Overlap genenone
Upstream geneDpyd, LOC100043275, LOC100043278, Ptbp2
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-056N23.bB6Ng01-056N23.g
ACCDH878903DH878904
length1,1511,001
definitionDH878903|Mus musculus domesticus DNA, BAC clone: B6Ng01-056N23, 5' end.DH878904|Mus musculus domesticus DNA, BAC clone: B6Ng01-056N23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,641,490 - 119,642,636)(119,516,704 - 119,517,722)
sequence
gaattctctcctgggttttcacatcctcccagtgtccactgtgagtcatg
gcgactgggaaactcggatgtgtaattcccattaacaattcgacagaaac
agcaaccatgtagctaatcccctacttggtatggtgtcttctgctcacac
cacactgcatacactccctcaggagtctgacaggaagtgagtgtcacacc
accaccaccaccacccccctttgaaaagcagaatccagcaagtccagtga
ttgtttcagggagcagacatagagtctagccttggatgcattgcatgctg
tctgggctagagccattatctctttgtacacatgggatactaacagtgac
atctaattggcattccgggactgatgaactctcaatatggtcagcacaaa
gcagagaaatatgtcttgatgtggtttattaggtcaattatttaataaat
taaaatacttggggaaggaaaatgcagcctgactttttctccaatctgtt
cttttttggcaaagtgactggattgcaaagcaaattctcagagagtggag
gcagaactacattaaaagctctgtaatcaaaacagagagcataaaaacac
ttgagcattggctaatggacagtttatcatccaaacagatgcattcatta
agggaaaaattaccttcaaatatcagtaaaataaattgggcctgttctga
tttcttatttctgcagcaggagtgttcaggactacagaaacaagaatata
aaagatgttcctgtgcggaggaagggcagtttgggcatttaagtttattg
ggcgaagctgtttgaactgcttgaagatggtaaatcaagcaaatatggaa
cattccagctgataatgtctttctgggccaattacttctcttctatattt
caaatgcagagactgttttgttacttcgtggctgttgctattattaatgc
tgcagatagtgctaataagaaatcattttctgctttgccttagccggtgt
ggactctgatcactcaccacagtatccctctggtggcagggagacgtccc
cttcagcacagaactgaaagaatgggcttcctgtactggtgagcctcaca
gtcagaaggagagggaatcgctctgtgcagaatggtgggcctgggatgag
a
gaattccccagttcgtagaaatatccttagttcagatactgttatctctt
tccctacacccttacattagagtaacaataaagacccatgaatttgaaaa
aaaaaaaaaaaaacacgtcctgatcaagagtgtagaatgacaggcttgct
tgcagacttggcatcctagttcttggcatcctccgttctcccgcaaggca
cctgatgagatttacagccttcctagcctgggaggttttcttttaaagtc
taatgaagttgtccatgagcttctgttctgagtccattcttaaattcttt
tcttaatgagactaagaacctcaagacgccagtttccccccccccccccc
atcactagggcctcacgcatactaagtgagtaacatcacacagcatcctt
atccctttcctcttcttcttttgagacagggtctcactagtttcctcacg
gttttcttgaacttgctttgcagcctagacaggtgtttaatttgcaatcc
tcctgcatcaggctctcgaatatctgggtttagaggtctataccactgga
ttggacttattgcgacatcagttacttaggagctagtgatttttttagta
cttatgaatctgacacgatatagaaagaggctgggaaacccgacctcggt
ttcacgttatctaggagaagcctggtacagtagtctcatcagaacaaaat
aatcaaagctagggtaataaagagggaagcaagcatgcaagctgctgtag
aagaattaacatttccccagaaaatcagctttctgtaacataaaagcatc
caaagagggagaatcctttaaatattgtgtgttttttttttttcaacttc
aagaggatacccaggacatgcaactgtttttaacatgaaatcttcaaaga
atatatttcccatgcaatactaaaattctcaaaggggctccttcgaggca
acccttgagtgaatctcttcatcatgtgagttttttcaagagaaaacttt
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_119641490_119642636
seq2: B6Ng01-056N23.b_51_1201 (reverse)

seq1  TCTCATCCCAGG-CCACCA-TCTGCACAGAGCGATTCCCTCTGCCTTCTG  48
      |||||||||||| |||||| |||||||||||||||||||||| |||||||
seq2  TCTCATCCCAGGCCCACCATTCTGCACAGAGCGATTCCCTCT-CCTTCTG  49

seq1  ACTGTGA-GCTCA-CAGTACAGG-AGGCCAATCTTTCAGTTCTGTGCTGG  95
      ||||||| ||||| ||||||||| || ||| |||||||||||||||||| 
seq2  ACTGTGAGGCTCACCAGTACAGGAAGCCCATTCTTTCAGTTCTGTGCTGA  99

seq1  AGAGGGACGTCTCCCTGCCA-CAGAGGGGATACTGTGGTGAGTGATCAGA  144
      || ||||||||||||||||| |||| ||||||||||||||||||||||||
seq2  AG-GGGACGTCTCCCTGCCACCAGA-GGGATACTGTGGTGAGTGATCAGA  147

seq1  GTCCACACC-GCTAAGGCAAAGCAGAAAATGATTTCTTATTAGCACTATC  193
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GTCCACACCGGCTAAGGCAAAGCAGAAAATGATTTCTTATTAGCACTATC  197

seq1  TGCAGCATTAATAATAGCAACAGCCACGAAGTAACAAAACAGTCTCTGCA  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCATTAATAATAGCAACAGCCACGAAGTAACAAAACAGTCTCTGCA  247

seq1  TTTGAAATATAGAAGAGAAGTAATTGGCCCAGAAAGACATTATCAGCTGG  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAATATAGAAGAGAAGTAATTGGCCCAGAAAGACATTATCAGCTGG  297

seq1  AATGTTCCATATTTGCTTGATTTACCATCTTCAAGCAGTTCAAACAGCTT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTCCATATTTGCTTGATTTACCATCTTCAAGCAGTTCAAACAGCTT  347

seq1  CGCCCAATAAACTTAAATGCCCAAACTGCCCTTCCTCCGCACAGGAACAT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCCAATAAACTTAAATGCCCAAACTGCCCTTCCTCCGCACAGGAACAT  397

seq1  CTTTTATATTCTTGTTTCTGTAGTCCTGAACACTCCTGCTGCAGAAATAA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTATATTCTTGTTTCTGTAGTCCTGAACACTCCTGCTGCAGAAATAA  447

seq1  GAAATCAGAACAGGCCCAATTTATTTTACTGATATTTGAAGGTAATTTTT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCAGAACAGGCCCAATTTATTTTACTGATATTTGAAGGTAATTTTT  497

seq1  CCCTTAATGAATGCATCTGTTTGGATGATAAACTGTCCATTAGCCAATGC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTAATGAATGCATCTGTTTGGATGATAAACTGTCCATTAGCCAATGC  547

seq1  TCAAGTGTTTTTATGCTCTCTGTTTTGATTACAGAGCTTTTAATGTAGTT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTGTTTTTATGCTCTCTGTTTTGATTACAGAGCTTTTAATGTAGTT  597

seq1  CTGCCTCCACTCTCTGAGAATTTGCTTTGCAATCCAGTCACTTTGCCAAA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTCCACTCTCTGAGAATTTGCTTTGCAATCCAGTCACTTTGCCAAA  647

seq1  AAAGAACAGATTGGAGAAAAAGTCAGGCTGCATTTTCCTTCCCCAAGTAT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAACAGATTGGAGAAAAAGTCAGGCTGCATTTTCCTTCCCCAAGTAT  697

seq1  TTTAATTTATTAAATAATTGACCTAATAAACCACATCAAGACATATTTCT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTTATTAAATAATTGACCTAATAAACCACATCAAGACATATTTCT  747

seq1  CTGCTTTGTGCTGACCATATTGAGAGTTCATCAGTCCCGGAATGCCAATT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTTGTGCTGACCATATTGAGAGTTCATCAGTCCCGGAATGCCAATT  797

seq1  AGATGTCACTGTTAGTATCCCATGTGTACAAAGAGATAATGGCTCTAGCC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTCACTGTTAGTATCCCATGTGTACAAAGAGATAATGGCTCTAGCC  847

seq1  CAGACAGCATGCAATGCATCCAAGGCTAGACTCTATGTCTGCTCCCTGAA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAGCATGCAATGCATCCAAGGCTAGACTCTATGTCTGCTCCCTGAA  897

seq1  ACAATCACTGGACTTGCTGGATTCTGCTTTTCAAAGGGGGGTGGTGGTGG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATCACTGGACTTGCTGGATTCTGCTTTTCAAAGGGGGGTGGTGGTGG  947

seq1  TGGTGGTGTGACACTCACTTCCTGTCAGACTCCTGAGGGAGTGTATGCAG  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGTGTGACACTCACTTCCTGTCAGACTCCTGAGGGAGTGTATGCAG  997

seq1  TGTGGTGTGAGCAGAAGACACCATACCAAGTAGGGGATTAGCTACATGGT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTGTGAGCAGAAGACACCATACCAAGTAGGGGATTAGCTACATGGT  1047

seq1  TGCTGTTTCTGTCGAATTGTTAATGGGAATTACACATCCGAGTTTCCCAG  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTTTCTGTCGAATTGTTAATGGGAATTACACATCCGAGTTTCCCAG  1097

seq1  TCGCCATGACTCACAGTGGACACTGGGAGGATGTGAAAACCCAGGAGAGA  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCCATGACTCACAGTGGACACTGGGAGGATGTGAAAACCCAGGAGAGA  1147

seq1  ATTC  1147
      ||||
seq2  ATTC  1151

seq1: chr3_119516704_119517722
seq2: B6Ng01-056N23.g_68_1068

seq1  GAATTCCCCAGTTCGTAGAAATATCCTTAGTTCAGATACTGTTATCTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCAGTTCGTAGAAATATCCTTAGTTCAGATACTGTTATCTCTT  50

seq1  TCCCTACACCCTTACATTAGAGTAACAATAAAGACCCATGAATTTGAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTACACCCTTACATTAGAGTAACAATAAAGACCCATGAATTTGAAAA  100

seq1  AAAAAAAAAAAAACACGTCCTGATCAAGAGTGTAGAATGACAGGCTTGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAACACGTCCTGATCAAGAGTGTAGAATGACAGGCTTGCT  150

seq1  TGCAGACTTGGCATCCTAGTTCTTGGCATCCTCCGTTCTCCCGCAAGGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGACTTGGCATCCTAGTTCTTGGCATCCTCCGTTCTCCCGCAAGGCA  200

seq1  CCTGATGAGATTTACAGCCTTCCTAGCCTGGGAGGTTTTCTTTTAAAGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATGAGATTTACAGCCTTCCTAGCCTGGGAGGTTTTCTTTTAAAGTC  250

seq1  TAATGAAGTTGTCCATGAGCTTCTGTTCTGAGTCCATTCTTAAATTCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAAGTTGTCCATGAGCTTCTGTTCTGAGTCCATTCTTAAATTCTTT  300

seq1  TCTTAATGAGACTAAGAACCTCAAGACGCCAGTTTCCCCCCCCCCCCCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAATGAGACTAAGAACCTCAAGACGCCAGTTTCCCCCCCCCCCCCCC  350

seq1  ATCACTAGGGCCTCACGCATACTAAGTGAGTAACATCACACAGCATCCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTAGGGCCTCACGCATACTAAGTGAGTAACATCACACAGCATCCTT  400

seq1  ATCCCTTTCCTCTTCTTCTTTTGAGACAGGGTCTCACTAGTTTCCTCACG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTTTCCTCTTCTTCTTTTGAGACAGGGTCTCACTAGTTTCCTCACG  450

seq1  GTTTTCTTGAACTTGCTTTGCAGCCTAGACAGGTGTTTAATTTGCAATCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTTGAACTTGCTTTGCAGCCTAGACAGGTGTTTAATTTGCAATCC  500

seq1  TCCTGCATCAGGCTCTCGAATATCTGGGTTTAGAGGTCTATACCACTGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCATCAGGCTCTCGAATATCTGGGTTTAGAGGTCTATACCACTGGA  550

seq1  TTGGACTTATTGCGACATCAGTTACTTAGGAGCTAGTGATTTTTTTAGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGACTTATTGCGACATCAGTTACTTAGGAGCTAGTGATTTTTTTAGTA  600

seq1  CTTATGAATCTGACACGATATAGAAAGAGGCTGGGAAACCCGACCTCGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGAATCTGACACGATATAGAAAGAGGCTGGGAAACCCGACCTCGGT  650

seq1  TTCACGTTATCTAGGAGAAGCCTGGTACAGTAGTCTCATCAGAACAAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACGTTATCTAGGAGAAGCCTGGTACAGTAGTCTCATCAGAACAAAAT  700

seq1  AATCAAAGCTAGGGTAATAAAGAGGGAAGCAAGCATGCAAGCTGCTGTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAAGCTAGGGTAATAAAGAGGGAAGCAAGCATGCAAGCTGCTGTAG  750

seq1  AAGAATTAACATTTCCCCAGAAAATCAGCTTTCTGTAACATAAAAGCATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATTAACATTTCCCCAGAAAATCAGCTTTCTGTAACATAAAAGCATC  800

seq1  CAAAGAGGGAGAATCCTTTAAATATTGTGTGTTTTTTTTTTTTTCAACTT  850
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CAAAGAGGGAGAATCCTTTAAATATTGTGTG-TTTTTTTTTTTTCAACTT  849

seq1  CAAAGAGGATACCCAGGACATGCAACTGTTTTTTAACATGAAAATCTTCA  900
      | |||||||||||||||||||||||||| ||||||||||| |||||||||
seq2  C-AAGAGGATACCCAGGACATGCAACTG-TTTTTAACATG-AAATCTTCA  896

seq1  AAGAATATATTTCCCATGCAATACTTAAAATTCTCAAAGGGGGCTCCTTC  950
      |||||||||||||||||||||||| ||||||||||||| |||||||||||
seq2  AAGAATATATTTCCCATGCAATAC-TAAAATTCTCAAA-GGGGCTCCTTC  944

seq1  GGGAGGCAAACCCTTTGAAGGTGAAATCTCTTCAATCATGTGAGTTTTTT  1000
        |||||||  || ||||  ||| ||||||||| ||||||||||||||||
seq2  --GAGGCAA--CCCTTGA--GTG-AATCTCTTC-ATCATGTGAGTTTTTT  986

seq1  TCAAAGAGAAAAACCTTTT  1019
         |||||||||  |||||
seq2  --CAAGAGAAAA--CTTTT  1001