BAC Information

Click to search

BAC

Clone NameB6Ng01-058D21
Chromosome3 (Build37)
Map Location 6,399,920 - 6,400,872
singlet/doubletsinglet
Overlap genenone
Upstream geneZfhx4, Pxmp3, EG620382, EG667759, LOC100041165, LOC100041193, EG620570, LOC100041214
Downstream geneLOC383818, 1700008P02Rik, LOC100039349, Olfr289-ps1, EG667801, Pkia
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-058D21.bB6Ng01-058D21.g
ACCDH879874DH879875
length1,257951
definitionDH879874|Mus musculus domesticus DNA, BAC clone: B6Ng01-058D21, 5' end.DH879875|Mus musculus domesticus DNA, BAC clone: B6Ng01-058D21, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctcctcctatctgccctcccctttgcctctgaaaggacagctcc
tcccatacctcccaccttagtgtatcaagtctctgcagaattaggtgcat
cctgtcccacagaggccagtcaaggcaaccctctgctatgtgcttgggaa
tctctgaccagactgtgtatgctgtttggttggttgtttagtgtctggga
gcgcccaggggtccaggttagttgacaatgttagtcttcctacaggattg
ttatctccttgaggcccttcaatctttcccttaactcttctacaggggac
cctgacttcagtccattgtttgtctgtggctgtctatgtcagctgctgtg
tagagcttctcagagggttgctatgctaagttctgtctgcaagcacatca
tagcatactgtgagtgattgttatctgcctatgtgatgggtctcaaaata
agccagtcactggtcagtcattcctatagtctctgttccagctttgtctc
tgcatttctcttctgcagggccaatttcgggtcagaagttggggtcgatt
ggtgttcctgtccttcaactaggggtcccatatggctactggaggtagtc
tattcaggttccatattcccactgttcaggattttggctaaagtcctggg
tctctgtgacttcctagagaatcccccttaacccctacccacactcctgg
tacctgcatatttccatttatacttctggacccttggaactctcttcttt
ttctatccattcctgaacatgtcccctctctatttccctcaccctcctct
cttccatctatgtgtatttttaaggcaaatatctgtatgtaggattcttg
gttaatactaacacttttaatgcattatgtccttcaaaaattatatttct
ttgttgatgaagtattattgtggatattttctatgtgtcaaatgttgata
tatatattctagtgattattaattgattagcaaagtttattggtactagg
tttggttccaaattcaataaaatagatgcctcccatgataattcatgttt
ctattgaataaaggacatgtattgccacaccagccagaaggtggcgttcc
aggtctaatcgaatatttatattcattattgcatttcttgcactctagag
ccttcggtgagaagaaaaccgaaggatcgaattggtctccttccttcttg
gggagaagctgtttatgggaagagagacaatgatcctgggggaaaagacc
ataggat
gaattcaagtctatcaataacatagtgttcatactgtaaagtgtttaagc
agcggtgttcactgtggtcctgtagacctttgactttcatagctaaaact
ttcccctttaaacacatcttttcaggtgagtactttaagatcctggtagc
aactcttctattctgtattcctgtggatttgtacctcttagagacagcat
atcaggggaacaatggagtgcctgctttactcagtgtggtttagttggtt
tagtgtaatctgttttaaaataagaaatcaggatctcagagaggcattat
tcacatgggtggttcagcagttttcagaatgcccaaaatatcaaaaccat
ctcatatcccgcataaaatgaaatggtcagaggatcaatgtacacaaatg
ggtattataatgactctctatgcagaaaatattgccatagaagcatcatg
attaactcagagaaaccactgtaaatactatctgcattacatagtttgga
gtacactacaaactcaagagttacttaatctaaaatgtgtctttctaaac
aaattttccttacaatttgcttttttcaatgcaaaagcaagaggtttatt
ttctgacacattggggtcaacctcaatcagttcctctaggcaagtgataa
gaaggcaactcagaatggttattacagtgttttgttttgttttttacttt
ttaggggcacaggttacatcaacaaggttacagttcaaacttattgccta
agcatattgacctttaaatctattgtgtagcaagtatgacatacatatga
actctacctgggactttcctgagggttgggtgacttttagtacattctga
taatgtttactcaaggatgttcctgtgattggagagtggaatttggccta
gccttgacttcaggtgggaaggggaactgtaaggagggtattggatggaa
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_6399920_6400872
seq2: B6Ng01-058D21.g_68_1018

seq1  GAATTCAAGTCTATCAATAACATAGTGTTCATACTGTAAAGTGTTTAAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGTCTATCAATAACATAGTGTTCATACTGTAAAGTGTTTAAGC  50

seq1  AGCGGTGTTCACTGTGGTCCTGTAGACCTTTGACTTTCATAGCTAAAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGGTGTTCACTGTGGTCCTGTAGACCTTTGACTTTCATAGCTAAAACT  100

seq1  TTCCCCTTTAAACACATCTTTTCAGGTGAGTACTTTAAGATCCTGGTAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCTTTAAACACATCTTTTCAGGTGAGTACTTTAAGATCCTGGTAGC  150

seq1  AACTCTTCTATTCTGTATTCCTGTGGATTTGTACCTCTTAGAGACAGCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTTCTATTCTGTATTCCTGTGGATTTGTACCTCTTAGAGACAGCAT  200

seq1  ATCAGGGGAACAATGGAGTGCCTGCTTTACTCAGTGTGGTTTAGTTGGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGGGGAACAATGGAGTGCCTGCTTTACTCAGTGTGGTTTAGTTGGTT  250

seq1  TAGTGTAATCTGTTTTAAAATAAGAAATCAGGATCTCAGAGAGGCATTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTAATCTGTTTTAAAATAAGAAATCAGGATCTCAGAGAGGCATTAT  300

seq1  TCACATGGGTGGTTCAGCAGTTTTCAGAATGCCCAAAATATCAAAACCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATGGGTGGTTCAGCAGTTTTCAGAATGCCCAAAATATCAAAACCAT  350

seq1  CTCATATCCCGCATAAAATGAAATGGTCAGAGGATCAATGTACACAAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATATCCCGCATAAAATGAAATGGTCAGAGGATCAATGTACACAAATG  400

seq1  GGTATTATAATGACTCTCTATGCAGAAAATATTGCCATAGAAGCATCATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTATAATGACTCTCTATGCAGAAAATATTGCCATAGAAGCATCATG  450

seq1  ATTAACTCAGAGAAACCACTGTAAATACTATCTGCATTACATAGTTTGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACTCAGAGAAACCACTGTAAATACTATCTGCATTACATAGTTTGGA  500

seq1  GTACACTACAAACTCAAGAGTTACTTAATCTAAAATGTGTCTTTCTAAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACACTACAAACTCAAGAGTTACTTAATCTAAAATGTGTCTTTCTAAAC  550

seq1  AAATTTTCCTTACAATTTGCTTTTTTCAATGCAAAAGCAAGAGGTTTATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTCCTTACAATTTGCTTTTTTCAATGCAAAAGCAAGAGGTTTATT  600

seq1  TTCTGACACATTGGGGTCAACCTCAATCAGTTCCTCTAGGCAAGTGATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGACACATTGGGGTCAACCTCAATCAGTTCCTCTAGGCAAGTGATAA  650

seq1  GAAGGCAACTCAGAATGGTTATTACAGTGTTTTGTTTTGTTTTTTACTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCAACTCAGAATGGTTATTACAGTGTTTTGTTTTGTTTTTTACTTT  700

seq1  TTAGGGGCACAGGTTACATCAACAAGGTTACAGTTCAAACTTATTGCCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGGCACAGGTTACATCAACAAGGTTACAGTTCAAACTTATTGCCTA  750

seq1  AGCATATTGACCTTTAAATCTATTGTGTAGCAAGTATGACATACATATGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATATTGACCTTTAAATCTATTGTGTAGCAAGTATGACATACATATGA  800

seq1  ACTCTACCTGGGACTTTCCTGAGGGTTGGGTGACTTTTAGTACATTCTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTACCTGGGACTTTCCTGAGGGTTGGGTGACTTTTAGTACATTCTGA  850

seq1  TAATGTTTTACTCAAGGATGTTCCTGTGATTGGAGAGTGGAATTTGGCCT  900
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATG-TTTACTCAAGGATGTTCCTGTGATTGGAGAGTGGAATTTGGCCT  899

seq1  AGCCTTGACTTCAGGTGGGAAGGGGAAGCTGTAAGGAGGGTATGGGATGG  950
      ||||||||||||||||||||||||||| ||||||||||||||| ||||||
seq2  AGCCTTGACTTCAGGTGGGAAGGGGAA-CTGTAAGGAGGGTATTGGATGG  948

seq1  GAA  953
       ||
seq2  AAA  951