BAC Information

Click to search

BAC

Clone NameB6Ng01-058K04
Chromosome3 (Build37)
Map Location 115,870,560 - 115,994,594
singlet/doubletdoublet
Overlap geneGpr88, Cdc14a
Upstream geneEG546808, Edg1, Dph5, LOC626061, Slc30a7, Extl2, Vcam1
Downstream geneRtcd1, Dbt, LOC100043702, LOC100043705, Lrrc39, A930028L21Rik, Sass6, Hiat1, Slc35a3, Agl, LOC100043710, LOC100043250, Frrs1, Palmd, EG668749, 1700061I17Rik, LOC674908
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-058K04.bB6Ng01-058K04.g
ACCDH880161DH880162
length798784
definitionDH880161|Mus musculus domesticus DNA, BAC clone: B6Ng01-058K04, 5' end.DH880162|Mus musculus domesticus DNA, BAC clone: B6Ng01-058K04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,993,794 - 115,994,594)(115,870,560 - 115,871,346)
sequence
gaattctttacacagtagagatccctcctgcaccccatgctgtttacaca
gtgaactttggcctcattctgttgcttcttttcactctccccctttcctc
ttcctcttcctcctcctcctcctccctcatcctccacctccttcttctcc
cactcctcctcctccacatccctctttttggccagaatagggtaaatttc
cagtaattaattataaaatgtgggggtggagttgccaactcgccccactt
cttttgttattgtgctgcagaaaacaacatttatgactagacttggcagt
atggctccctttcctctctttctccccgagaggaaagcagatccccgtgc
agacccccaatcctaagcctcctgggacctcccgtgtggttgatgtgcgg
gcttaggttctcctgctgctgcctggctggcaggaaggttaaaggaccat
ggaggtccccacttcttgtggaagtaagtaggggtttgagtcctccttca
cggcccatgaagctgctctgtgagactggccttttgctgctgaagatgaa
ggcagtgcaggagcccagaacaagcaagaccccagaacaagcaggactga
ctcgctcaacataagtgttctaagggaagtaaaacatttgcttgtgtaaa
cacagggacctgagtacaaacccataggaccactgttaagctgattctgc
tacacacatctgtaatctcagtgctcctggggtgagatgggaggcaagac
aggagaattccccaaagctggcaggcctatacatcccagtgacatgtg
gaattctgtgaaggaagactagtttaggaaaatcagcaataaagtttcaa
ctatttacttatttacagaattttttaaattatttcttttattcattgag
attaatataagtacatcatttcctccactcccttttctccttctgcatcc
tcccacattttctccttcctctctttcaaattttgggattcttaatatat
tttagggataatttatatatatgaatattatatgattaatatataaataa
tatatgttgtatttttaatttggctatctcttctaaaatatatatacatg
tatacatatatatacatgtatacgcacacacacacacacacacatatata
tatataatacagagagtgagagagagagagagagagagagagagattcct
aaatccataaatacaacagtctatgtaatgttacttttatgtatgttttc
agggtaaccatttagtattggaaagccagttgacatgcttctccctggag
aagtgtctatctctcaccttcagtagtccttagttgcctgtagttctttg
tgatggatgtgggtgggttcccctatgtccgttttggcgtgtctattgtc
attgttcttgttcagcttgtggtttagcaatcatgttggtgagactttat
ggacatagcttctgacattaccaggaaataatctcacaacaaactccctg
aacctctgactcttaaaatatttctggcccctcttcagcaatgctccctg
agccttagtacaggagttatttgagccatttact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_115993794_115994594
seq2: B6Ng01-058K04.b_50_847 (reverse)

seq1  CACATGTCACTGGGATGTATAGGCCTGCCAGCTTTGGGGAATTCTCCTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGTCACTGGGATGTATAGGCCTGCCAGCTTTGGGGAATTCTCCTGT  50

seq1  CTCTGCCTCCCATCTCACCCCAGGAGCACTGAGATTACAGATGTGTGTAG  100
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CT-TGCCTCCCATCTCACCCCAGGAGCACTGAGATTACAGATGTGTGTAG  99

seq1  CAGCATTCAGCTTTTACAGTGGTCCTATGGGTTTGAACTCAGGTCCCTGT  150
      ||| | ||||| || |||||||||||||||||||| ||||||||||||||
seq2  CAG-AATCAGC-TTAACAGTGGTCCTATGGGTTTGTACTCAGGTCCCTGT  147

seq1  GTTTACACAAGCAAATGTTTTACTTCCCTTAAAACACTTCTGTTGAGCGA  200
      ||||||||||||||||||||||||||||||| ||||||| ||||||||||
seq2  GTTTACACAAGCAAATGTTTTACTTCCCTTAGAACACTTATGTTGAGCGA  197

seq1  GTCAGTCCTGCTTGTTCTGGGGTCTTGCTTGTTCTGGGCTCCTGCACTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTCCTGCTTGTTCTGGGGTCTTGCTTGTTCTGGGCTCCTGCACTGC  247

seq1  CTTCATCTTCAGCAGCAAAAGGCCAGTCTCACAGAGCAGCTTCATGGGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATCTTCAGCAGCAAAAGGCCAGTCTCACAGAGCAGCTTCATGGGCC  297

seq1  GTGAAGGAGGACTCAAACCCCTACTTACTTCCACAAGAAGTGGGGACCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGGAGGACTCAAACCCCTACTTACTTCCACAAGAAGTGGGGACCTC  347

seq1  CATGGTCCTTTAACCTTCCTGCCAGCCAGGCAGCAGCAGGAGAACCTAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTCCTTTAACCTTCCTGCCAGCCAGGCAGCAGCAGGAGAACCTAAG  397

seq1  CCCGCACATCAACCACACGGGAGGTCCCAGGAGGCTTAGGATTGGGGGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGCACATCAACCACACGGGAGGTCCCAGGAGGCTTAGGATTGGGGGTC  447

seq1  TGCACGGGGATCTGCTTTCCTCTCGGGGAGAAAGAGAGGAAAGGGAGCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACGGGGATCTGCTTTCCTCTCGGGGAGAAAGAGAGGAAAGGGAGCCA  497

seq1  TACTGCCAAGTCTAGTCATAAATGTTGTTTTCTGCAGCACAATAACAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGCCAAGTCTAGTCATAAATGTTGTTTTCTGCAGCACAATAACAAAA  547

seq1  GAAGTGGGGCGAGTTGGCAACTCCACCCCCACATTTTATAATTAATTACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGGGGCGAGTTGGCAACTCCACCCCCACATTTTATAATTAATTACT  597

seq1  GGAAATTTACCCTATTCTGGCCAAAAAGAGGGATGTGGAGGAGGAGGAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATTTACCCTATTCTGGCCAAAAAGAGGGATGTGGAGGAGGAGGAGT  647

seq1  GGGAGAAGAAGGAGGTGGAGGAGGAGGGAGGAGGAGGAGGAGGAAGAGGA  700
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GGGAGAAGAAGGAGGTGGAGGATGAGGGAGGAGGAGGAGGAGGAAGAGGA  697

seq1  AGAGGAAAGGGGGAGAGTGAAAAGAAGCAACAGAATGAGGCCAAAGTTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAAAGGGGGAGAGTGAAAAGAAGCAACAGAATGAGGCCAAAGTTCA  747

seq1  CTGTGTAAACAGCATGGGGTGCAGGAGGGATCTCTACTGTGTAAAGAATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTAAACAGCATGGGGTGCAGGAGGGATCTCTACTGTGTAAAGAATT  797

seq1  C  801
      |
seq2  C  798

seq1: chr3_115870560_115871346
seq2: B6Ng01-058K04.g_67_850

seq1  GAATTCTGTGAAGGAAGACTAGTTTAGGAAAATCAGCAATAAAGTTTCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGAAGGAAGACTAGTTTAGGAAAATCAGCAATAAAGTTTCAA  50

seq1  CTATTTACTTATTTACAGAATTTTTTAAATTATTTCTTTTATTCATTGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTACTTATTTACAGAATTTTTTAAATTATTTCTTTTATTCATTGAG  100

seq1  ATTAATATAAGTACATCATTTCCTCCACTCCCTTTTCTCCTTCTGCATCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATATAAGTACATCATTTCCTCCACTCCCTTTTCTCCTTCTGCATCC  150

seq1  TCCCACATTTTCTCCTTCCTCTCTTTCAAATTTTGGGATTCTTAATATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACATTTTCTCCTTCCTCTCTTTCAAATTTTGGGATTCTTAATATAT  200

seq1  TTTAGGGATAATTTATATATATGAATATTATATGATTAATATATAAATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGGATAATTTATATATATGAATATTATATGATTAATATATAAATAA  250

seq1  TATATGTTGTATTTTTAATTTGGCTATCTCTTCTAAAATATATATACATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGTTGTATTTTTAATTTGGCTATCTCTTCTAAAATATATATACATG  300

seq1  TATACATATATATACATGTATACGCACACACACACACACACACATATATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACATATATATACATGTATACGCACACACACACACACACACATATATA  350

seq1  TATATAATACAGAGAGTGAGAGAGAGAGAGAGAGAGAGAGAGAGATTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAATACAGAGAGTGAGAGAGAGAGAGAGAGAGAGAGAGAGATTCCT  400

seq1  AAATCCATAAATACAACAGTCTATGTAATGTTACTTTTATGTATGTTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCATAAATACAACAGTCTATGTAATGTTACTTTTATGTATGTTTTC  450

seq1  AGGGTAACCATTTAGTATTGGAAAGCCAGTTGACATGCTTCTCCCTGGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTAACCATTTAGTATTGGAAAGCCAGTTGACATGCTTCTCCCTGGAG  500

seq1  AAGTGTCTATCTCTCACCTTCAGTAGTCCTTAGTTGCCTGTAGTTCTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTCTATCTCTCACCTTCAGTAGTCCTTAGTTGCCTGTAGTTCTTTG  550

seq1  TGATGGATGTGGGTGGGTTCCCCTATGTCCGTTTTGGCGTGTCTATTGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGATGTGGGTGGGTTCCCCTATGTCCGTTTTGGCGTGTCTATTGTC  600

seq1  ATTGTTCTTGTTCAGCTTGTGGTTTAGCAATCATGTTGGTGAGACTTTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTCTTGTTCAGCTTGTGGTTTAGCAATCATGTTGGTGAGACTTTAT  650

seq1  GGACATAGCTTCTGACATTACCAGGAAATAATCTCACAACAAACTCCCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATAGCTTCTGACATTACCAGGAAATAATCTCACAACAAACTCCCTG  700

seq1  AACCTCTGACTCTTAGAATATTTCTGGCCCCTCTTCAGCAATGCTCCCTG  750
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AACCTCTGACTCTTAAAATATTTCTGGCCCCTCTTCAGCAATGCTCCCTG  750

seq1  AGCCTTAGGTACAGGAGTTATTTTGTAGCCATTTACT  787
      ||||||| |||||||||||||||   |||||||||||
seq2  AGCCTTA-GTACAGGAGTTATTT--GAGCCATTTACT  784