BAC Information

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BAC

Clone NameB6Ng01-058N22
Chromosome3 (Build37)
Map Location 94,204,780 - 94,205,433
singlet/doubletsinglet
Overlap geneLingo4
Upstream geneEG383891, Tchh, Tchhl1, S100a11, S100a10, EG433623, Tdpoz2, Tdpoz1, LOC668325, LOC545550, EG436563, Tdpoz4, Tdpoz3, EG668341, LOC668344, EG668346, Tdpoz5, EG668353, EG668356, LOC668359, LOC100042761, LOC433624, LOC668367, LOC433625, LOC100043188, EG383977, EG245290, EG668385, EG212727, Them4, Them5, Gm659, Rorc
Downstream geneTdrkh, Oaz3, Mrpl9, LOC668403, 2310007A19Rik, Tnrc4, Snx27, LOC100043228, EG668409, Tuft1, LOC100042793, BC021767, Selenbp2, LOC100042801, Cgn, Pogz, Psmb4, Selenbp1, Rfx5, Pik4cb, Zfp687, Psmd4, Pip5k1a, Vps72, Tmod4, Scnm1, Lysmd1, Tnfaip8l2, LOC668436, Sema6c, Gabpb2, Mllt11, Cdc42se1, Gm128, Bnipl, Prune, 4930504E06Rik, Anxa9, Lass2, Setdb1, LOC100043294, 4930558C23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-058N22.bB6Ng01-058N22.g
ACCDH880328DH880329
length1,112654
definitionDH880328|Mus musculus domesticus DNA, BAC clone: B6Ng01-058N22, 5' end.DH880329|Mus musculus domesticus DNA, BAC clone: B6Ng01-058N22, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttagctctgtaccccattttttattggggttattttgtt
ttctggaatccaacttcttgagttctttatatatattgaatattagtccc
ctatcggatttaggattgctaaatatcttttcccaatgtgttggtggtct
ttttgtcttactgacagtgtcctttgccttaagctttgcaattttatgag
gtcccatttgtcgattcttgatcttacagcacaggccattgttgttctgt
tcaggaatttttcccctgtgtccatatctttgaggctcttccccactttc
tcctctgtaagtttcagtgtctctggttttatgtggagttccttcacaca
cttagacttgagttttgtacaaggagattagaatggatcaatttgcattc
ttttatgtgataactgccagttgagtcagcaccattagttgaaaatgctg
tcttttttccactggatgattttagcttctttgtcaaagatcaagtgacc
acaggcatgtgggtttatttctgggtcttcaattctatccattgatctac
ctgtctgtcactgtaccagtaccatgcagtttttaatcacaattgctcta
tagtacagctttaggtcaggcatggtgattccaccagaggttcttttatt
gttgagaatagtttttgctaggttttttgttattcgagatagattggtaa
attgccctttctaactctgtgaagaattgagttggaattttgatggtgat
tgcattgaatctgtagattgcttttggcaagatagccatttttactgtat
tgatcctgccaatccatcagcattggagatactgccatcttctgagatct
tctctgatttctttcttcagagactagaagtttttatctacagatctttc
acttccttagagtcacaccaaggtagtttatattatttgtgactatgtga
aggtgttgtttcccaaatttctttctcatccatttatcctttgtgtacag
aaaggccattgatttgttgagttaattttaattcagctactgcactggag
ctgtattcaggtaggagttctctgggattttaggggcacctatatacaac
ttccactgcagt
gaattcctcaggacccatctccctgacatctgctttctacaaactctgct
atgtccctcttaccccattcttattctcccatatgttgtgcctacaactt
tacccaaggatcagggagatcccatccagacttgagagagcttctgaccc
tgggctgactgggaaaaggttcttagtttgaccaaatcatcagaagctaa
gaaacatgcaggcttcagctctgctctagtctctgccctctttccgcctg
gcccaaggcccagagtagccaatttggtgtcccaaactgtttgtgtggat
ggtaagcctggctgtatattattcatggaacagagtgcaggggcactgga
ggatgggattgggatcctttaccagagccccaaggacagcacctcttccc
ttatagatggggttgagatgtggaagatatctaaagggtactcaaatact
tcacggggtcctcagccttgagcttcccgtacatccttccttaatggtgt
tttgattctagttagtatgtgcttctgagggagagcttccacccctttcc
acccgagctgcctgagaagacacaagaaatggcttgtgagccaaggaagc
atggataaagggggagaaacagcccatgacctgatgccttgcgtgggagg
aagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_94204780_94205433
seq2: B6Ng01-058N22.g_68_721 (reverse)

seq1  CCTTCCTCCCACGCAAGGCATCAGGTCATGGGCTGTTTCTCCCCCTTTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTCCCACGCAAGGCATCAGGTCATGGGCTGTTTCTCCCCCTTTAT  50

seq1  CCATGCTTCCTTGGCTCACAAGCCATTTCTTGTGTCTTCTCAGGCAGCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCTTCCTTGGCTCACAAGCCATTTCTTGTGTCTTCTCAGGCAGCTC  100

seq1  GGGTGGAAAGGGGTGGAAGCTCTCCCTCAGAAGCACATACTAACTAGAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGAAAGGGGTGGAAGCTCTCCCTCAGAAGCACATACTAACTAGAAT  150

seq1  CAAAACACCATTAAGGAAGGATGTACGGGAAGCTCAAGGCTGAGGACCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACACCATTAAGGAAGGATGTACGGGAAGCTCAAGGCTGAGGACCCC  200

seq1  GTGAAGTATTTGAGTACCCTTTAGATATCTTCCACATCTCAACCCCATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGTATTTGAGTACCCTTTAGATATCTTCCACATCTCAACCCCATCT  250

seq1  ATAAGGGAAGAGGTGCTGTCCTTGGGGCTCTGGTAAAGGATCCCAATCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGGAAGAGGTGCTGTCCTTGGGGCTCTGGTAAAGGATCCCAATCCC  300

seq1  ATCCTCCAGTGCCCCTGCACTCTGTTCCATGAATAATATACAGCCAGGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCCAGTGCCCCTGCACTCTGTTCCATGAATAATATACAGCCAGGCT  350

seq1  TACCATCCACACAAACAGTTTGGGACACCAAATTGGCTACTCTGGGCCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATCCACACAAACAGTTTGGGACACCAAATTGGCTACTCTGGGCCTT  400

seq1  GGGCCAGGCGGAAAGAGGGCAGAGACTAGAGCAGAGCTGAAGCCTGCATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCAGGCGGAAAGAGGGCAGAGACTAGAGCAGAGCTGAAGCCTGCATG  450

seq1  TTTCTTAGCTTCTGATGATTTGGTCAAACTAAGAACCTTTTCCCAGTCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTAGCTTCTGATGATTTGGTCAAACTAAGAACCTTTTCCCAGTCAG  500

seq1  CCCAGGGTCAGAAGCTCTCTCAAGTCTGGATGGGATCTCCCTGATCCTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGGTCAGAAGCTCTCTCAAGTCTGGATGGGATCTCCCTGATCCTTG  550

seq1  GGTAAAGTTGTAGGCACAACATATGGGAGAATAAGAATGGGGTAAGAGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAAGTTGTAGGCACAACATATGGGAGAATAAGAATGGGGTAAGAGGG  600

seq1  ACATAGCAGAGTTTGTAGAAAGCAGATGTCAGGGAGATGGGTCCTGAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGCAGAGTTTGTAGAAAGCAGATGTCAGGGAGATGGGTCCTGAGGA  650

seq1  ATTC  654
      ||||
seq2  ATTC  654