BAC Information

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BAC

Clone NameB6Ng01-059H16
Chromosome3 (Build37)
Map Location 46,212,055 - 46,368,530
singlet/doubletdoublet
Overlap geneEG241989
Upstream geneLOC100039282, LOC433580, LOC671801
Downstream geneLOC545517, LOC383849, LOC383850, LOC100039426
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-059H16.bB6Ng01-059H16.g
ACCDH880751DH880752
length1,0971,044
definitionDH880751|Mus musculus domesticus DNA, BAC clone: B6Ng01-059H16, 5' end.DH880752|Mus musculus domesticus DNA, BAC clone: B6Ng01-059H16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,212,055 - 46,213,168)(46,367,474 - 46,368,530)
sequence
gaattcctctttaagggaattatattgctattgaaatccattagcagtca
gaaaaacctggagtctttggaaaatgtcagtagaattaggataggacagt
gctacatggtcaaatgttccacttcccatgtaaaatgccttttaactaca
caaaggtaaacacaagagaagtgatgaggacataaatacagaaattagat
atagaaaatattgatttgtggaaacataatacatatgagtaaacagattt
gtattttaaaatgtgttacactttaaaagacatttggtgaagagagcaga
atatgtactatacttgatgttttggtaagtttaactttctttctttggtt
aaaatggcacaagtagatgtcagagattataaacaagggaatcctgtgga
ctcttgcataatgccaaattacaagttagccatttgtaaactatacagag
tagagctgaaattgaacaaggagaaacacagagttctatgcattaattca
tgctcagctttgcgctgggaagtatatataactctgctaagcattttaag
cattaggtggagtgggtatgcatgaaagaagaatcattttttttctcctc
aggtcaaagcattacttgtatatagtccagagataaaggtaagaattaca
gtatttctagacatctgttagcatttgctgatttgagatatgaacttctt
tttcctagctctcatttttattatttatttcatttaaaacttacttggat
ttgctactttaaattgtgagtgtgttatttgtaattcttcagaagagtat
ttgttctttctctggacaatgtttatagtggaatataaagatttgcttac
tattttaaactttttcattgttagtagcttatttgatgttccatgctatc
aatttgttctctagattttgtgttttgtttattatgccaccttttaaagt
gtctatttataatatttattatcacttctatctgcctatcagcttatata
tttgatgcacaatttttttatgatataccttaactttcttttaactcact
tggatttgtctctaaattggatgagacaaataaaaatgtgaatttct
gaattcaatgacattatatatatattttttcctttacttgtcttaaaaac
aaaatgtgtttctggccaaaatctcaaaatattgctggagtacattcttc
attaaaaacaaattctatagatggaattcaaatcgcaaataaaactctat
aattgttattgacccattcattgtttctactctgtgtcttgaccattatc
cagtttaagtttttatgagttttttaaactaaactagattaacttttaat
ttttaaactaaatatcaaatgttgaataaaattgttaaacattgcaaatg
tatgtgagaatatttttatagtatgattctctcttaaaggattctcaata
ctaatgtctgttatgtataagatgcatacactttcctttaagatttagaa
gtggttagattcttgattttgaaagtcagggattgtgccctgccggccct
taccactgaagggtatgtagttgttaattttataatgacattgatacaca
tatattatggacttggttaagtttttcccagcctattctccttctctttg
ccctcatatatctctttcccttagataattttgtgtcaattttcatgtta
tctatacatacatattttatgtctatgtatacaagttggtgccatggcta
acagaaaattgtctctcattcataccctacattattcatttaatagattc
accagctgcaaatttcataattccatctgcttttatgaattcatatacag
ataggtacactgcataatttgattctatgagtcaccagttctgaataatg
ctatgtagccataaatatgcaggcatctagttatgttcttagagaccttc
atggaagcaccagaagataagacatatttactgtttgaaaatactgtgtt
gatttatggagaggctttcatttatgtttccaactgtccataaaaattcc
tcttttctcacaacacaaacaccttggtctattttcttgtttgtcatcta
ccctgatggaaatgaaatctgacataaattcatttgcatttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_46212055_46213168
seq2: B6Ng01-059H16.b_47_1143

seq1  GAATTCCTCTTTAAGGGAATTATATTGCTATTGAAATCCATTAGCAGTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCTTTAAGGGAATTATATTGCTATTGAAATCCATTAGCAGTCA  50

seq1  GAAAAACCTGGAGTCTTTGGAAAATGTCAGTAGAATTAGGATAGGACAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAACCTGGAGTCTTTGGAAAATGTCAGTAGAATTAGGATAGGACAGT  100

seq1  GCTACATGGTCAAATGTTCCACTTCCCATGTAAAATGCCTTTTAACTACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACATGGTCAAATGTTCCACTTCCCATGTAAAATGCCTTTTAACTACA  150

seq1  CAAAGGTAAACACAAGAGAAGTGATGAGGACATAAATACAGAAATTAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGTAAACACAAGAGAAGTGATGAGGACATAAATACAGAAATTAGAT  200

seq1  ATAGAAAATATTGATTTGTGGAAACATAATACATATGAGTAAACAGATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAAATATTGATTTGTGGAAACATAATACATATGAGTAAACAGATTT  250

seq1  GTATTTTAAAATGTGTTACACTTTAAAAGACATTTGGTGAAGAGAGCAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTTAAAATGTGTTACACTTTAAAAGACATTTGGTGAAGAGAGCAGA  300

seq1  ATATGTACTATACTTGATGTTTTGGTAAGTTTAACTTTCTTTCTTTGGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTACTATACTTGATGTTTTGGTAAGTTTAACTTTCTTTCTTTGGTT  350

seq1  AAAATGGCACAAGTAGATGTCAGAGATTATAAACAAGGGAATCCTGTGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGGCACAAGTAGATGTCAGAGATTATAAACAAGGGAATCCTGTGGA  400

seq1  CTCTTGCATAATGCCAAATTACAAGTTAGCCATTTGTAAACTATACAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGCATAATGCCAAATTACAAGTTAGCCATTTGTAAACTATACAGAG  450

seq1  TAGAGCTGAAATTGAACAAGGAGAAACACAGAGTTCTATGCATTAATTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGCTGAAATTGAACAAGGAGAAACACAGAGTTCTATGCATTAATTCA  500

seq1  TGCTCAGCTTTGCGCTGGGAAGTATATATAACTCTGCTAAGCATTTTAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCAGCTTTGCGCTGGGAAGTATATATAACTCTGCTAAGCATTTTAAG  550

seq1  CATTAGGTGGAGTGGGTATGCATGAAAGAAGAATCATTTTTTTTCTCCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGGTGGAGTGGGTATGCATGAAAGAAGAATCATTTTTTTTCTCCTC  600

seq1  AGGTCAAAGCATTACTTGTATATAGTCCAGAGATAAAGGTAAGAATTACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCAAAGCATTACTTGTATATAGTCCAGAGATAAAGGTAAGAATTACA  650

seq1  GTATTTCTAGACATCTGTTAGCATTTGCTGATTTGAGATATGAACTTCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTCTAGACATCTGTTAGCATTTGCTGATTTGAGATATGAACTTCTT  700

seq1  TTTCCTAGCTCTCATTTTTATTATTTATTTCATTTAAAACTTACTTGGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTAGCTCTCATTTTTATTATTTATTTCATTTAAAACTTACTTGGAT  750

seq1  TTGCTACTTTAAATTGTGAGTGTGTTATTTGTAATTCTTCAGAAGAGTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTACTTTAAATTGTGAGTGTGTTATTTGTAATTCTTCAGAAGAGTAT  800

seq1  TTGTTCTTTCTCTGGACAATGTTTATAGTGGAATATAAAGATTTGCTTAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCTTTCTCTGGACAATGTTTATAGTGGAATATAAAGATTTGCTTAC  850

seq1  TATTTTAAACTTTTTCATTGTTAGTAGCTTATTTGATGTTCCATGCTATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTAAACTTTTTCATTGTTAGTAGCTTATTTGATGTTCCATGCTATC  900

seq1  AATTTGTTCTCTAGATTTTGTGTTTTGTTTTATTATTGCCACCTTTTAAA  950
      ||||||||||||||||||||||||||| ||||||| ||||||||||||||
seq2  AATTTGTTCTCTAGATTTTGTGTTTTG-TTTATTA-TGCCACCTTTTAAA  948

seq1  GTGTCTATTTAATAATATTTATTAATCACTTCTATCTGCCTATCCAGCTT  1000
      |||||||||| |||||||||||| ||||||||||||||||||| ||||||
seq2  GTGTCTATTT-ATAATATTTATT-ATCACTTCTATCTGCCTAT-CAGCTT  995

seq1  ATATATTTTGATGCACAATTTTTTTATGATTATACCCTTAAACTATCTTT  1050
      ||||| ||||||||||||||||||||||| ||||||  | |||| |||||
seq2  ATATA-TTTGATGCACAATTTTTTTATGA-TATACC--TTAACTTTCTTT  1041

seq1  TAACTCTACTTGTGATTTTGTCTCTAAATTCTGGATTGAAGACAAATAAA  1100
      |||||| ||||| || |||||||||||||  |||||   |||||||||||
seq2  TAACTC-ACTTG-GA-TTTGTCTCTAAAT--TGGAT--GAGACAAATAAA  1084

seq1  ATATTGTAATTTCT  1114
      | ||   |||||||
seq2  A-ATGTGAATTTCT  1097

seq1: chr3_46367474_46368530
seq2: B6Ng01-059H16.g_70_1113 (reverse)

seq1  AAAAAATGCAAATGAATTTATGTCAAGATCTCATTTCATTCAGGGTAGAA  50
      |||||||||||||||||||||||| |||| |||||||  ||||||||| |
seq2  AAAAAATGCAAATGAATTTATGTC-AGATTTCATTTCCATCAGGGTAG-A  48

seq1  TGACAAACAAGGAAATAGAACCAAGGGTGTTTGTGTTGTTGAGAAAAGAG  100
      ||||||||||| |||||| ||||| ||||||||||||| |||||||||||
seq2  TGACAAACAAGAAAATAG-ACCAA-GGTGTTTGTGTTG-TGAGAAAAGAG  95

seq1  G-ATTTTTATGGACAGTTTGTGAAAACATAAATTGAAAAGCCTCTCCATA  149
      | |||||||||||||||   || ||||||||||   ||||||||||||||
seq2  GAATTTTTATGGACAGT---TGGAAACATAAAT--GAAAGCCTCTCCATA  140

seq1  AATCAACACAGTATTTTCAAAACAGTAAATATAGTCTTATCTTCTTGGTG  199
      |||||||||||||||||| ||||||||||||| ||||||||||| |||||
seq2  AATCAACACAGTATTTTC-AAACAGTAAATAT-GTCTTATCTTC-TGGTG  187

seq1  CTTCCATGAAGGTCTCTAAGAACATAACCTAGATGCCTGCATATTTATGG  249
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CTTCCATGAAGGTCTCTAAGAACATAA-CTAGATGCCTGCATATTTATGG  236

seq1  CTACATAGCATTATTCAGAACTGGTGACTCATAGAATCAAATTATGCAGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATAGCATTATTCAGAACTGGTGACTCATAGAATCAAATTATGCAGT  286

seq1  GTACCTATCTGTATATGAATTCATAAAAGCAGATGGAATTATGAAATTTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCTATCTGTATATGAATTCATAAAAGCAGATGGAATTATGAAATTTG  336

seq1  CAGCTGGTGAATCTATTAAATGAATAATGTAGGGTATGAATGAGAGACAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGGTGAATCTATTAAATGAATAATGTAGGGTATGAATGAGAGACAA  386

seq1  TTTTCTGTTAGCCATGGCACCAACTTGTATACATAGACATAAAATATGTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGTTAGCCATGGCACCAACTTGTATACATAGACATAAAATATGTA  436

seq1  TGTATAGATAACATGAAAATTGACACAAAATTATCTAAGGGAAAGAGATA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATAGATAACATGAAAATTGACACAAAATTATCTAAGGGAAAGAGATA  486

seq1  TATGAGGGCAAAGAGAAGGAGAATAGGCTGGGAAAAACTTAACCAAGTCC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGGGCAAAGAGAAGGAGAATAGGCTGGGAAAAACTTAACCAAGTCC  536

seq1  ATAATATATGTGTATCAATGTCATTATAAAATTAACAACTACATACCCTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATATATGTGTATCAATGTCATTATAAAATTAACAACTACATACCCTT  586

seq1  CAGTGGTAAGGGCCGGCAGGGCACAATCCCTGACTTTCAAAATCAAGAAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGTAAGGGCCGGCAGGGCACAATCCCTGACTTTCAAAATCAAGAAT  636

seq1  CTAACCACTTCTAAATCTTAAAGGAAAGTGTATGCATCTTATACATAACA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACCACTTCTAAATCTTAAAGGAAAGTGTATGCATCTTATACATAACA  686

seq1  GACATTAGTATTGAGAATCCTTTAAGAGAGAATCATACTATAAAAATATT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTAGTATTGAGAATCCTTTAAGAGAGAATCATACTATAAAAATATT  736

seq1  CTCACATACATTTGCAATGTTTAACAATTTTATTCAACATTTGATATTTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACATACATTTGCAATGTTTAACAATTTTATTCAACATTTGATATTTA  786

seq1  GTTTAAAAATTAAAAGTTAATCTAGTTTAGTTTAAAAAACTCATAAAAAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAAAATTAAAAGTTAATCTAGTTTAGTTTAAAAAACTCATAAAAAC  836

seq1  TTAAACTGGATAATGGTCAAGACACAGAGTAGAAACAATGAATGGGTCAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACTGGATAATGGTCAAGACACAGAGTAGAAACAATGAATGGGTCAA  886

seq1  TAACAATTATAGAGTTTTATTTGCGATTTGAATTCCATCTATAGAATTTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAATTATAGAGTTTTATTTGCGATTTGAATTCCATCTATAGAATTTG  936

seq1  TTTTTAATGAAGAATGTACTCCAGCAATATTTTGAGATTTTGGCCAGAAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAATGAAGAATGTACTCCAGCAATATTTTGAGATTTTGGCCAGAAA  986

seq1  CACATTTTGTTTTTAAGACAAGTAAAGGAAAAAATATATATATAATGTCA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTTTGTTTTTAAGACAAGTAAAGGAAAAAATATATATATAATGTCA  1036

seq1  TTGAATTC  1057
      ||||||||
seq2  TTGAATTC  1044