BAC Information

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BAC

Clone NameB6Ng01-060C23
Chromosome3 (Build37)
Map Location 126,257,594 - 126,397,057
singlet/doubletdoublet
Overlap geneCamk2d
Upstream geneNdst4, Ugt8a, Arsj
Downstream geneAnk2, LOC100043749, LOC100043361, LOC100043364, Larp7, 4930422G04Rik, Neurog2, Alpk1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-060C23.bB6Ng01-060C23.g
ACCDH881235DH881236
length1,1431,006
definitionDH881235|Mus musculus domesticus DNA, BAC clone: B6Ng01-060C23, 5' end.DH881236|Mus musculus domesticus DNA, BAC clone: B6Ng01-060C23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(126,395,903 - 126,397,057)(126,257,594 - 126,258,598)
sequence
gaattcaatccatagcccagaacccagtaacccacgcaggaaagtcttct
agacaatgaagctcagattaaccaaactcactctaccatctatgtttgta
gagccatagcctggcaatggtttctctctctctttttttttttaattgca
tgaaattaataaaaaataatatttctaaagatttatttctttttataaat
atgtgtatatggtttcaaaagtttatatgttccacatgcatgtaagtgcc
caaggagccaggagaaggtgttagatctcctggaactggagttacaggtc
attgtgtgcccagttctctgcaagaacagtaagggctcttcacggctgag
ccatctctccatcccctgaaggataatgttttatgacatataaaaaatta
aatttggctttcagtgtctatcaataattctgctagaatgccatcgctct
cgccttcctccaggaaatggtatgcctgcttttgagcaatgatcattaag
aaagtgaaactagaaagaaagcccagccaccaaagcttttgactattgtt
aagtgtgcttcctgggaaaaccgaacaaccctcacttcccagcagactcc
caaagtcctttaaaggaatcacatgcagcagggcaagccagtcataacaa
cagtgagaggcagccaactctctttcgtcagtgactggttttgtgatttc
atctggagagcaggtttttgctttgaataacacgacagtctattaagtgc
taagtgtttaagaaatgttcatccgagcagagcggcatggtctataatcc
taacaatctggagacctaagttcaagggcagtctggggaggggaaaaaaa
acaaactataactttaatttatggttatgttttctgagatatcatttaat
cactcccctggaggatgaggaagcagctagcagctttagctgtccatcag
ataaaagagacttttcactctcctgacaggaggactcaagcccttctatg
gattgtgggaagcagcaagaagcacaaaatgggctcagcccagaagccag
caccttggaaaatcagtaaagttgagggaccgcttatgaaggttggtaca
ggaggttgctactgcttcgcgcctctccgctccttctgagcca
gaattccacctgattgccgcaacttccccaactggtttctgttgagttgt
gaacactcaatttgaggatgccatctctctgtgtattcattttgaaagaa
tacttggaagcctcacaaaataggctcttcctgggactccagctgactgc
cttagagagacttctctagttggtttctgctggatgctttgaatacccaa
ctgatgacatctattgtttatctatctattcatccacccatctgtccttc
tcttcattacttgctattatttttctttggcttgctatatgcttagtaaa
cttacttattcaaagctagaagtatggttataaaaggtcattatctagac
tgtcttaaacaacaaggtaccagtgacagaaacaaagaaatcattccatc
aagttgtagcttggtgattcaataagttgaattgtggttatttgtaagag
catggataagaagttacttagaagagcataagaaactagtgggtaactaa
actatagaaggaaaaagagctcttagtatgatacttgctagaatctggaa
ccacctaggaccaaaatctccagacactccagtttattattttttaaccc
cttggcaagcttttgagaaattatgttaagatttattttgttatattgag
aagattcattgtaagaataggtggtaccgtttacttggtttgggttctgg
actatgtaaaaatgtgaaagctagctgagccccaatgttcattgtacgtt
tcttcttcctgaccccagacccagtgacaagctgcttcaaggtcctgctg
tcttgtcaacaatgcatgataaactgtacctcgagctgcaagatgttctt
ccttcaattgtttttatctggcacttcattacaacaacagtaagagacat
tcatcaattcttcaccgctcatccagcctcaggagtccctccattctttg
tcatggacgcttaatggccacatcttgtggggggtttttggtgtggtttg
tgtgag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_126395903_126397057
seq2: B6Ng01-060C23.b_48_1190 (reverse)

seq1  TGGCTCATGAAGAGGAGC-GAGGAGCGCGGAGCAGGGTTAGCATACCTCC  49
      ||||||| ||  |||||| |||  ||||| |||||   ||||| ||||||
seq2  TGGCTCA-GA--AGGAGCGGAGAGGCGCGAAGCAG---TAGCA-ACCTCC  43

seq1  TTGTACCCACCCTTCATAAGCGGTCCCTCAACCTTTACTGGTATTTTCCA  99
       |||| ||| ||||||||||||||||||||| ||||||||  ||||||||
seq2  -TGTA-CCAACCTTCATAAGCGGTCCCTCAA-CTTTACTG--ATTTTCCA  88

seq1  AGGTGCTGGCTTTCTGGGCTGGGCCCATTTTGTGCTTCTTGCTGCTTCCC  149
      |||||||||| |||||||||| ||||||||||||||||||||||||||||
seq2  AGGTGCTGGC-TTCTGGGCTGAGCCCATTTTGTGCTTCTTGCTGCTTCCC  137

seq1  ACAATCCATAG-AGGGCTTGAGTCCTCCTGTCAGGAGAGTGAAAAGTCTC  198
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ACAATCCATAGAAGGGCTTGAGTCCTCCTGTCAGGAGAGTGAAAAGTCTC  187

seq1  TTTTATCTGATGGACAGCTAAAGCTGCTAGCTGCTTCCTCATCCTCCAGG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATCTGATGGACAGCTAAAGCTGCTAGCTGCTTCCTCATCCTCCAGG  237

seq1  GGAGTGATTAAATGATATCTCAGAAAACATAACCATAAATTAAAGTTATA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGATTAAATGATATCTCAGAAAACATAACCATAAATTAAAGTTATA  287

seq1  GTTTGTTTTTTTTTCCCCTCCCCAGACTGCCCTTGAACTTAGGTCTCCAG  348
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTG-TTTTTTTTCCCCTCCCCAGACTGCCCTTGAACTTAGGTCTCCAG  336

seq1  ATTGTTAGGATTATAGACCATGCCGCTCTGCTCGGATGAACATTTCTTAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTAGGATTATAGACCATGCCGCTCTGCTCGGATGAACATTTCTTAA  386

seq1  ACACTTAGCACTTAATAGACTGTCGTGTTATTCAAAGCAAAAACCTGCTC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTAGCACTTAATAGACTGTCGTGTTATTCAAAGCAAAAACCTGCTC  436

seq1  TCCAGATGAAATCACAAAACCAGTCACTGACGAAAGAGAGTTGGCTGCCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGATGAAATCACAAAACCAGTCACTGACGAAAGAGAGTTGGCTGCCT  486

seq1  CTCACTGTTGTTATGACTGGCTTGCCCTGCTGCATGTGATTCCTTTAAAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTGTTGTTATGACTGGCTTGCCCTGCTGCATGTGATTCCTTTAAAG  536

seq1  GACTTTGGGAGTCTGCTGGGAAGTGAGGGTTGTTCGGTTTTCCCAGGAAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTGGGAGTCTGCTGGGAAGTGAGGGTTGTTCGGTTTTCCCAGGAAG  586

seq1  CACACTTAACAATAGTCAAAAGCTTTGGTGGCTGGGCTTTCTTTCTAGTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTTAACAATAGTCAAAAGCTTTGGTGGCTGGGCTTTCTTTCTAGTT  636

seq1  TCACTTTCTTAATGATCATTGCTCAAAAGCAGGCATACCATTTCCTGGAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTTCTTAATGATCATTGCTCAAAAGCAGGCATACCATTTCCTGGAG  686

seq1  GAAGGCGAGAGCGATGGCATTCTAGCAGAATTATTGATAGACACTGAAAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCGAGAGCGATGGCATTCTAGCAGAATTATTGATAGACACTGAAAG  736

seq1  CCAAATTTAATTTTTTATATGTCATAAAACATTATCCTTCAGGGGATGGA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATTTAATTTTTTATATGTCATAAAACATTATCCTTCAGGGGATGGA  786

seq1  GAGATGGCTCAGCCGTGAAGAGCCCTTACTGTTCTTGCAGAGAACTGGGC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGGCTCAGCCGTGAAGAGCCCTTACTGTTCTTGCAGAGAACTGGGC  836

seq1  ACACAATGACCTGTAACTCCAGTTCCAGGAGATCTAACACCTTCTCCTGG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAATGACCTGTAACTCCAGTTCCAGGAGATCTAACACCTTCTCCTGG  886

seq1  CTCCTTGGGCACTTACATGCATGTGGAACATATAAACTTTTGAAACCATA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTGGGCACTTACATGCATGTGGAACATATAAACTTTTGAAACCATA  936

seq1  TACACATATTTATAAAAAGAAATAAATCTTTAGAAATATTATTTTTTATT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACATATTTATAAAAAGAAATAAATCTTTAGAAATATTATTTTTTATT  986

seq1  AATTTCATGCAATTAAAAAAAAAAAGAGAGAGAGAAACCATTGCCAGGCT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCATGCAATTAAAAAAAAAAAGAGAGAGAGAAACCATTGCCAGGCT  1036

seq1  ATGGCTCTACAAACATAGATGGTAGAGTGAGTTTGGTTAATCTGAGCTTC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTCTACAAACATAGATGGTAGAGTGAGTTTGGTTAATCTGAGCTTC  1086

seq1  ATTGTCTAGAAGACTTTCCTGCGTGGGTTACTGGGTTCTGGGCTATGGAT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCTAGAAGACTTTCCTGCGTGGGTTACTGGGTTCTGGGCTATGGAT  1136

seq1  TGAATTC  1155
      |||||||
seq2  TGAATTC  1143

seq1: chr3_126257594_126258598
seq2: B6Ng01-060C23.g_64_1069

seq1  GAATTCCACCTGATTGCCGCAACTTCCCCAACTGGTTTCTGTTGAGTTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACCTGATTGCCGCAACTTCCCCAACTGGTTTCTGTTGAGTTGT  50

seq1  GAACACTCAATTTGAGGATGCCATCTCTCTGTGTATTCATTTTGAAAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACTCAATTTGAGGATGCCATCTCTCTGTGTATTCATTTTGAAAGAA  100

seq1  TACTTGGAAGCCTCACAAAATAGGCTCTTCCTGGGACTCCAGCTGACTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGGAAGCCTCACAAAATAGGCTCTTCCTGGGACTCCAGCTGACTGC  150

seq1  CTTAGAGAGACTTCTCTAGTTGGTTTCTGCTGGATGCTTTGAATACCCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGAGAGACTTCTCTAGTTGGTTTCTGCTGGATGCTTTGAATACCCAA  200

seq1  CTGATGACATCTATTGTTTATCTATCTATTCATCCACCCATCTGTCCTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGACATCTATTGTTTATCTATCTATTCATCCACCCATCTGTCCTTC  250

seq1  TCTTCATTACTTGCTATTATTTTTCTTTGGCTTGCTATATGCTTAGTAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCATTACTTGCTATTATTTTTCTTTGGCTTGCTATATGCTTAGTAAA  300

seq1  CTTACTTATTCAAAGCTAGAAGTATGGTTATAAAAGGTCATTATCTAGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTTATTCAAAGCTAGAAGTATGGTTATAAAAGGTCATTATCTAGAC  350

seq1  TGTCTTAAACAACAAGGTACCAGTGACAGAAACAAAGAAATCATTCCATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTAAACAACAAGGTACCAGTGACAGAAACAAAGAAATCATTCCATC  400

seq1  AAGTTGTAGCTTGGTGATTCAATAAGTTGAATTGTGGTTATTTGTAAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGTAGCTTGGTGATTCAATAAGTTGAATTGTGGTTATTTGTAAGAG  450

seq1  CATGGATAAGAAGTTACTTAGAAGAGCATAAGAAACTAGTGGGTAACTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGATAAGAAGTTACTTAGAAGAGCATAAGAAACTAGTGGGTAACTAA  500

seq1  ACTATAGAAGGAAAAAGAGCTCTTAGTATGATACTTGCTAGAATCTGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATAGAAGGAAAAAGAGCTCTTAGTATGATACTTGCTAGAATCTGGAA  550

seq1  CCACCTAGGACCAAAATCTCCAGACACTCCAGTTTATTATTTTTTAACCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTAGGACCAAAATCTCCAGACACTCCAGTTTATTATTTTTTAACCC  600

seq1  CTTGGCAAGCTTTTGAGAAATTATGTTAAGATTTATTTTGTTATATTGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCAAGCTTTTGAGAAATTATGTTAAGATTTATTTTGTTATATTGAG  650

seq1  AAGATTCATTGTAAGAATAGGTGGTACCGTTTACTTGGTTTGGGTTCTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTCATTGTAAGAATAGGTGGTACCGTTTACTTGGTTTGGGTTCTGG  700

seq1  ACTATGTAAAAATGTGAAAGCTAGCTGAGCCCCAATGTTCATTGTACGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGTAAAAATGTGAAAGCTAGCTGAGCCCCAATGTTCATTGTACGTT  750

seq1  TCTTCTTCCTGACCCCAGACCCAGTGACAAGCTGCTTCAAGGTCCTGCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTCCTGACCCCAGACCCAGTGACAAGCTGCTTCAAGGTCCTGCTG  800

seq1  TCTTGTCAACAATGCATGATAAACTGTACCTCGAGCTGCAAGATGTTCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTCAACAATGCATGATAAACTGTACCTCGAGCTGCAAGATGTTCTT  850

seq1  CCTTCAATTGTTTTTATCTGGCACTTCATTACAACAACAGTAAGAGACAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCAATTGTTTTTATCTGGCACTTCATTACAACAACAGTAAGAGACAT  900

seq1  TCATCAATTCTTCACCGCTCATCCAGCCTCAGGAGTCCCTCCATTCTTTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCAATTCTTCACCGCTCATCCAGCCTCAGGAGTCCCTCCATTCTTTG  950

seq1  TCATGGACGCTTAATGGCCACAATCTTGTGTGGGGTGTGT-GTGT-GTTT  998
      ||||||||||||||||||||| |||||||| ||||| | | |||| ||||
seq2  TCATGGACGCTTAATGGCCAC-ATCTTGTGGGGGGTTTTTGGTGTGGTTT  999

seq1  GTGTGTG  1005
      ||||| |
seq2  GTGTGAG  1006