BAC Information

Click to search

BAC

Clone NameB6Ng01-060K02
Chromosome3 (Build37)
Map Location 159,136,330 - 159,286,360
singlet/doubletdoublet
Overlap geneLOC668907, Depdc1a, Rpe65
Upstream geneLrrc7, LOC100041008, LOC668905
Downstream geneGpr177
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-060K02.bB6Ng01-060K02.g
ACCDH881551DH881552
length9561,086
definitionDH881551|Mus musculus domesticus DNA, BAC clone: B6Ng01-060K02, 5' end.DH881552|Mus musculus domesticus DNA, BAC clone: B6Ng01-060K02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(159,136,330 - 159,137,036)(159,285,247 - 159,286,360)
sequence
gaattcctggtgtggcctaaaatttggtgatatccactggccaatgggaa
attttcaaagatgcttgttatgcacaaacatattggttttgtaggctgat
gcacagttgatttaacccaggaacttaatcatcttgtgtaaacatcctag
ctttgtggattggtctgggccttgtaataagattgagggactatactgat
accattcagttgattcatggaatcaaattgaagatccagaagtaaaccca
tacagctataaacacttgattttttgtaaagaagccaaaactataaagta
gaaaaataaagcatcttcaacaaatagtcctggtctaactgtatgtctac
atgtagaagaatgcaaatagatccatatctatcaccctgcacaaaactca
agtccaagtggatcaaagaccttaacataaaactggatacactaagtttg
agaaaagagaaagtgggcaatatccttgaacccgtaggtatagaaaacaa
cttccttaacagaacaccaacagctcaggcactaagatcaataatttcta
aatgggacctcatgaaactggaaagcatctgtaaggcaaaagacactgtc
aataggacaaaacagcagcctacagaatggaaaagattttttaaattaac
tttttatttgtttacatctcaaactgctgctcctccctctccaagtccct
ttctccattctcccacccattctcctctgagagggtgggacctacactga
gtattccaccaccctggcaaatcaagtctctcccagattaggtatatcct
ctcccattgaggcaatacaggcaagcctgtgaagactgagctgcctgcta
cacatgtgctgaagtgggagggggatgtctttgtttcagccctggtatgt
tctttggttggtggcttagattctgagagctcgcatatgtatcaaaagat
ggccta
gaattcttgctgttatgccttttcttatcccttccattcagagcttcact
atgctgcagaaggtgttttactgtggtgttttgtttttgttttggttggt
tgcattttgttttttctagtagtgatctccaagacctgaccacagaaatt
caattctggtgcagttccattcagtttaagaaccaccatttgaaagttag
taaataatcagcccaacccctttcctaatagagaacacactgaatttcaa
tataaagcaaagtccagacactcattgattccattaccatcatcttcttc
cagagcatctggttgagaaacaaagatgggttcagatgggtaagaatctg
gctcttgccacatccagatttctttagttttgacgttcatcttacagagc
tgcttatgaccaagaaaaagcaattggatagttaatgaactgctttactt
gactagcatatgactcaaagatttattggatgttagtaagatgctttatt
accttgtcaggaacaaagtgattcaacccaagtccgtatgcataagtata
aggtttccctccaaatttctggtaattgatttgaggaaattcaaaggctt
taaaacagaacacaggtagaggaaaattcaatatctttaagtagatcatt
gatccccttctcagatttttactagatcatcttaccttgacgaggccctg
aaaagagaacctcaggttccagccatatggtctcatcactgcgcagagtg
gctgtggcagttgtatggggcagtgtgactaaatttctgcctgtgtcgac
ctaagaaagaagatagcagagaccacagtgagaagggaaagaaattcaag
tatctgtaaatgcagacttcccaaacttttcctcctcttttcagaggtca
ccatttaatgaacacacacaacacaacaacacacaaccagacagagactg
gtactgtagtggccttggaagtctctcagatggcatactgtagtacaagt
acctgctgaacatatgttcaataaatgtctgtttaatgtgacacatatga
tagctaaaatcttgaaatggtcttagaactcagaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_159136330_159137036
seq2: B6Ng01-060K02.b_45_751

seq1  GAATTCCTGGTGTGGCCTAAAATTTGGTGATATCCACTGGCCAATGGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGGTGTGGCCTAAAATTTGGTGATATCCACTGGCCAATGGGAA  50

seq1  ATTTTCAAAGATGCTTGTTATGCACAAACATATTGGTTTTGTAGGCTGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCAAAGATGCTTGTTATGCACAAACATATTGGTTTTGTAGGCTGAT  100

seq1  GCACAGTTGATTTAACCCAGGAACTTAATCATCTTGTGTAAACATCCTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGTTGATTTAACCCAGGAACTTAATCATCTTGTGTAAACATCCTAG  150

seq1  CTTTGTGGATTGGTCTGGGCCTTGTAATAAGATTGAGGGACTATACTGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTGGATTGGTCTGGGCCTTGTAATAAGATTGAGGGACTATACTGAT  200

seq1  ACCATTCAGTTGATTCATGGAATCAAATTGAAGATCCAGAAGTAAACCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTCAGTTGATTCATGGAATCAAATTGAAGATCCAGAAGTAAACCCA  250

seq1  TACAGCTATAAACACTTGATTTTTTGTAAAGAAGCCAAAACTATAAAGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCTATAAACACTTGATTTTTTGTAAAGAAGCCAAAACTATAAAGTA  300

seq1  GAAAAATAAAGCATCTTCAACAAATAGTCCTGGTCTAACTGTATGTCTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATAAAGCATCTTCAACAAATAGTCCTGGTCTAACTGTATGTCTAC  350

seq1  ATGTAGAAGAATGCAAATAGATCCATATCTATCACCCTGCACAAAACTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGAAGAATGCAAATAGATCCATATCTATCACCCTGCACAAAACTCA  400

seq1  AGTCCAAGTGGATCAAAGACCTTAACATAAAACTGGATACACTAAGTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCAAGTGGATCAAAGACCTTAACATAAAACTGGATACACTAAGTTTG  450

seq1  AGAAAAGAGAAAGTGGGCAATATCCTTGAACCCGTAGGTATAGAAAACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGAGAAAGTGGGCAATATCCTTGAACCCGTAGGTATAGAAAACAA  500

seq1  CTTCCTTAACAGAACACCAACAGCTCAGGCACTAAGATCAATAATTTCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTAACAGAACACCAACAGCTCAGGCACTAAGATCAATAATTTCTA  550

seq1  AATGGGACCTCATGAAACTGGAAAGCATCTGTAAGGCAAAAGACACTGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGACCTCATGAAACTGGAAAGCATCTGTAAGGCAAAAGACACTGTC  600

seq1  AATAGGACAAAACAGCAGCCTACAGAATGGAAAAGATTTTTTAAATTAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGACAAAACAGCAGCCTACAGAATGGAAAAGATTTTTTAAATTAAC  650

seq1  TTTTTATTTGTTTACATCTCAAACTGCTGCTCCTCCCTCTCCAAGTCCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATTTGTTTACATCTCAAACTGCTGCTCCTCCCTCTCCAAGTCCCT  700

seq1  TTCTCCA  707
      |||||||
seq2  TTCTCCA  707

seq1: chr3_159285247_159286360
seq2: B6Ng01-060K02.g_67_1152 (reverse)

seq1  ATTCTGAAGTCTAAGACCATTATCAAGGATTTTTAGCTAATCAATATGGT  50
      |||||||  |||||||||||| |||||   |||||||| ||| |||||  
seq2  ATTCTGAGTTCTAAGACCATT-TCAAG--ATTTTAGCT-ATC-ATATG--  43

seq1  TGTCACATTAAAGACAGACATTTAACCCTGAACAATATGTTTCCAGCAGG  100
      |||||||||||  |||||||||||    ||||| |||||||  |||||||
seq2  TGTCACATTAA--ACAGACATTTA---TTGAAC-ATATGTT--CAGCAGG  85

seq1  TTACTTGTAACCTACCAGTATGCCATCTGAGAGACTTCCAAGGCCACTAC  150
       ||||||||  ||| |||||||||||||||||||||||||||||||||||
seq2  -TACTTGTA--CTA-CAGTATGCCATCTGAGAGACTTCCAAGGCCACTAC  131

seq1  AGTAACCAGTCTCCTTGTCTGGTTGTTGTTGTTGTTGTTGTTGTTGTTGT  200
      ||| |||||||||  |||||||||||      |||||||| ||||||   
seq2  AGT-ACCAGTCTC--TGTCTGGTTGT-----GTGTTGTTG-TGTTGTGTG  172

seq1  TGTTCCTTAAATGGTGACCTCTGAAAAGAGGAGGAAAAGTTTGGGAAGTC  250
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCATTAAATGGTGACCTCTGAAAAGAGGAGGAAAAGTTTGGGAAGTC  222

seq1  TGCATTTACAGATACTTGAATTTCTTTCCCTTCTCACTGTGGTCTCTGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTTACAGATACTTGAATTTCTTTCCCTTCTCACTGTGGTCTCTGCT  272

seq1  ATCTTCTTTCTTAGGTCGACACAGGCAGAAATTTAGTCACACTGCCCCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCTTTCTTAGGTCGACACAGGCAGAAATTTAGTCACACTGCCCCAT  322

seq1  ACAACTGCCACAGCCACTCTGCGCAGTGATGAGACCATATGGCTGGAACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTGCCACAGCCACTCTGCGCAGTGATGAGACCATATGGCTGGAACC  372

seq1  TGAGGTTCTCTTTTCAGGGCCTCGTCAAGGTAAGATGATCTAGTAAAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTTCTCTTTTCAGGGCCTCGTCAAGGTAAGATGATCTAGTAAAAAT  422

seq1  CTGAGAAGGGGATCAATGATCTACTTAAAGATATTGAATTTTCCTCTACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAAGGGGATCAATGATCTACTTAAAGATATTGAATTTTCCTCTACC  472

seq1  TGTGTTCTGTTTTAAAGCCTTTGAATTTCCTCAAATCAATTACCAGAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTCTGTTTTAAAGCCTTTGAATTTCCTCAAATCAATTACCAGAAAT  522

seq1  TTGGAGGGAAACCTTATACTTATGCATACGGACTTGGGTTGAATCACTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGGGAAACCTTATACTTATGCATACGGACTTGGGTTGAATCACTTT  572

seq1  GTTCCTGACAAGGTAATAAAGCATCTTACTAACATCCAATAAATCTTTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTGACAAGGTAATAAAGCATCTTACTAACATCCAATAAATCTTTGA  622

seq1  GTCATATGCTAGTCAAGTAAAGCAGTTCATTAACTATCCAATTGCTTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATATGCTAGTCAAGTAAAGCAGTTCATTAACTATCCAATTGCTTTTT  672

seq1  CTTGGTCATAAGCAGCTCTGTAAGATGAACGTCAAAACTAAAGAAATCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTCATAAGCAGCTCTGTAAGATGAACGTCAAAACTAAAGAAATCTG  722

seq1  GATGTGGCAAGAGCCAGATTCTTACCCATCTGAACCCATCTTTGTTTCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGGCAAGAGCCAGATTCTTACCCATCTGAACCCATCTTTGTTTCTC  772

seq1  AACCAGATGCTCTGGAAGAAGATGATGGTAATGGAATCAATGAGTGTCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGATGCTCTGGAAGAAGATGATGGTAATGGAATCAATGAGTGTCTG  822

seq1  GACTTTGCTTTATATTGAAATTCAGTGTGTTCTCTATTAGGAAAGGGGTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTGCTTTATATTGAAATTCAGTGTGTTCTCTATTAGGAAAGGGGTT  872

seq1  GGGCTGATTATTTACTAACTTTCAAATGGTGGTTCTTAAACTGAATGGAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGATTATTTACTAACTTTCAAATGGTGGTTCTTAAACTGAATGGAA  922

seq1  CTGCACCAGAATTGAATTTCTGTGGTCAGGTCTTGGAGATCACTACTAGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACCAGAATTGAATTTCTGTGGTCAGGTCTTGGAGATCACTACTAGA  972

seq1  AAAAACAAAATGCAACCAACCAAAACAAAAACAAAACACCACAGTAAAAC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAAAATGCAACCAACCAAAACAAAAACAAAACACCACAGTAAAAC  1022

seq1  ACCTTCTGCAGCATAGTGAAGCTCTGAATGGAAGGGATAAGAAAAGGCAT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCTGCAGCATAGTGAAGCTCTGAATGGAAGGGATAAGAAAAGGCAT  1072

seq1  AACAGCAAGAATTC  1114
      ||||||||||||||
seq2  AACAGCAAGAATTC  1086