BAC Information

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BAC

Clone NameB6Ng01-061M08
Chromosome3 (Build37)3 (Build37)
Map Location 78,290,286 - 78,291,125119,761,948 - 119,761,978
singlet/doubletsingletsinglet
Overlap geneLOC100041691
Upstream geneDnmt3a-ps1, EG626461, LOC667526, LOC626479
Downstream geneLOC383883, LOC100041748, LOC100041716, LOC100041725, LOC100041766, Rapgef2, LOC100041741
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-061M08.bB6Ng01-061M08.g
ACCDH882358DH882359
length1,139975
definitionDH882358|Mus musculus domesticus DNA, BAC clone: B6Ng01-061M08, 5' end.DH882359|Mus musculus domesticus DNA, BAC clone: B6Ng01-061M08, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(78,290,286 - 78,291,125)(119,761,948 - 119,761,978)
sequence
gaattctaaagcttctagcacatttcttatcaatagctgatcattttcac
catttccttgcgcttagaagcctggtagatcagtatgtgatctgatctgt
attgtatacaataaagggtttctatgtctgttgtatttgaataaaaattt
gaagttgattttgaatcatcctgaataagttcaggagttactctatgcaa
aacaactcctgcatactgaaagtcagcaactatggtaggacattcagaaa
aatcaaataacaccatttgaatagcatgcaactctactttttaaactgag
gcatatgagacttcgaatcactttatatttttgtgacttgtaaccagcca
ttcccaccattcttgcatcagtacgaaacggaagcatttcagggatttgt
attcttttttctttatatgaacagaagtcacctgctttttggatatttgt
tgttaatttctcacatatagctgctacgagctctttgtcaatcttgatta
actacccatactatcaaatcttagcacaagtatgaggctgttcctgacag
ttgtctgttcctgacaattgacaattcttccttttataattaaataagga
acttttcataatgatcccagtaggagaatgagttgagggttaaataaaat
aatatgcagccccctgttaatctctgaatcctctgggttttggggcaatt
ttaaccatcaggaggagcatggagtccatctgatgggcagaacacatcta
gcgattccttgcactgtggaccctctggtggtagacgagatgcgatctct
gactgaagcccttacagcagatgccgcagatatagggcttctccttggtg
tggaccctctggtgtctttggaagtgtgaggcctgactgaagccttccca
cactgctgacacgtgtagggtttctctcctgtgtggacctctggtgaata
ctaagccctgtgctttgggtgaattcttcccacactcctcacactgacgg
cttcttctcggtgttgaatatctgatggactaggagatgggatctcttgc
tgaaggctttccacagctgtcgcactggtaaggcttttcctccggggcat
ctctgatgaatctggaaatatgaaggcccaactgaagcc
gaattccaggaagtctttaatttctttatttcttccctgaccaagtcatc
attgagtaggtatttgctcagttgccatgggtatgttgattttatgctgt
ttttgttgttattgaagaacagccttattctgtggtgatctgataggatg
catgggattatgtcaatcttcttataatagtttaggcttgttttgtgact
gattatatggtcaattttggagaaggtactatgaggtgctgagaagaagg
gatattcttttgctttagggtggaagttctgtagatatgtgttaaattca
tttggttcgtaatctctattagtttcactgtgtctatgtttagtttctgt
ttcaatgacctgtccattagtgaaagtgagatgttgaagtctcccactat
tattgtgtggggttcaatgtgtgttttgagctttagtaaagtttcttcta
tgaatgtatatgcccttgcatttgaggcatagatgttcagaattgaaact
ttctcttggtggatttttcctttgaatatgaagtgtcctttctcatctca
cttggtaacttttgttgaaagtttatgatcatcttcacaatagtcacgag
gaatataaaatatctgggtgtgatgctaaccaagcaagtgaaagatctgt
cagtcaagaacttcaattctctgatggaggaaattgaggaagattcagaa
gatggaaagatctcccaggctcatgaattagaaggattaacagtataaac
tgagcatctaaccaaaagcaatctacaaattcaatgcaatccccattaaa
attccaaataagtttaataaaaaagaacaattctcaattcatttggaata
acaaaaaagccaaaaaagcagaaactattctcacaataatagaacttcta
gggaaatcatcattcctgacctcaagctatatgacagagcaaatatatat
atatatatatatatatataaaaagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_78290286_78291125
seq2: B6Ng01-061M08.b_352_1185

seq1  TGAGACTTCGAATCACTTTATTTTTTTGTGACTTGTAACCAGCCATTCCC  50
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TGAGACTTCGAATCACTTTATATTTTTGTGACTTGTAACCAGCCATTCCC  50

seq1  ACCATTCTTGCATCAGTACGAAACGGAAGCATTTCAGGGATTTGTATTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTCTTGCATCAGTACGAAACGGAAGCATTTCAGGGATTTGTATTCT  100

seq1  TTTTTCTTTATATGAACAGAAGTCACCTGCTTTTTGGATATTTGTTGTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTTTATATGAACAGAAGTCACCTGCTTTTTGGATATTTGTTGTTA  150

seq1  ATTTCTCACATATAGCTGCTACGAGCTCTTTGTCAATCTTGATTAACTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTCACATATAGCTGCTACGAGCTCTTTGTCAATCTTGATTAACTAC  200

seq1  CCATACTATCAAATCTTAGCACAAGTATGAGGCTGTTCCTGACAGTTGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATACTATCAAATCTTAGCACAAGTATGAGGCTGTTCCTGACAGTTGTC  250

seq1  TGTTCCTGACAATTGACAATTCTTCCTTTTATAATTAAATAAGGAACTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCTGACAATTGACAATTCTTCCTTTTATAATTAAATAAGGAACTTT  300

seq1  TCATAATGATCCCAGTAGGAGAATGAGTTGAGGGTTAAATAAAATAATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAATGATCCCAGTAGGAGAATGAGTTGAGGGTTAAATAAAATAATAT  350

seq1  GCAGTCCCCTGTTAATCTCTGAATCCTCTGGGTTTTGGGGCAATTTTAAC  400
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCCCCTGTTAATCTCTGAATCCTCTGGGTTTTGGGGCAATTTTAAC  400

seq1  CATCAGGAGGAGCATGGAGTCCATCTGAT-GGCAGAACACATCTAGCGAT  449
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CATCAGGAGGAGCATGGAGTCCATCTGATGGGCAGAACACATCTAGCGAT  450

seq1  TCCTTGCACTGTGGACCCTCTGGTGGTAGACGAGATGCGATCTCTGACTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGCACTGTGGACCCTCTGGTGGTAGACGAGATGCGATCTCTGACTG  500

seq1  AAGCCCTTACAGCAGATGCCGCAGATATAGGGCTTCTCCCTGGTGTGGAC  549
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AAGCCCTTACAGCAGATGCCGCAGATATAGGGCTTCTCCTTGGTGTGGAC  550

seq1  CCTCTGGTGTCTTTGGAAGTGTGAGGCCTGACTGAAGCCCTTCCCACACT  599
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CCTCTGGTGTCTTTGGAAGTGTGAGGCCTGACTGAAG-CCTTCCCACACT  599

seq1  GCTGACACGTGTAGGGTTTCTCTCCTGTGTGGACCCTCTGGTGAATACTA  649
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GCTGACACGTGTAGGGTTTCTCTCCTGTGTGGA-CCTCTGGTGAATACTA  648

seq1  AGCCCTGTGCTCTGGGTGAATTCCTTCCCACACTCCTCACACTTGAACGG  699
      ||||||||||| |||||||||| ||||||||||||||||||||   ||||
seq2  AGCCCTGTGCTTTGGGTGAATT-CTTCCCACACTCCTCACACT--GACGG  695

seq1  CTTCTCCCCGGTGTGAATTATCTGATGGACTAGGAGATGGGATCTCTGGC  749
      ||||| | ||||||  | ||||||||||||||||||||||||||||| ||
seq2  CTTCTTCTCGGTGTTGAATATCTGATGGACTAGGAGATGGGATCTCTTGC  745

seq1  TGAAGGCTTTCCCACAGCTGTCGCACTGATAAGGCTTTTCCCCCGTGTGC  799
      |||||||||| ||||||||||||||||| |||||||||||| ||| | ||
seq2  TGAAGGCTTT-CCACAGCTGTCGCACTGGTAAGGCTTTTCCTCCG-GGGC  793

seq1  ACTCTCTGATGAGTCTGAAGATATGAA-GTCCGACTGAAGCC  840
      | |||||||||| |||| | ||||||| | || |||||||||
seq2  A-TCTCTGATGAATCTGGAAATATGAAGGCCCAACTGAAGCC  834

seq1: chr3_119761948_119761978
seq2: B6Ng01-061M08.g_1008_1038 (reverse)

seq1  TATATATATATATATATATATATATATTTGC  31
      |||||||||||||||||||||||||||||||
seq2  TATATATATATATATATATATATATATTTGC  31