BAC Information

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BAC

Clone NameB6Ng01-062E16
Chromosome3 (Build37)
Map Location 47,688,549 - 47,793,691
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC545517, LOC383849, LOC383850, LOC100039426
Downstream geneLOC666202, LOC666208, 1700018B24Rik, LOC100039404
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-062E16.bB6Ng01-062E16.g
ACCDH882737DH882738
length1,2001,103
definitionDH882737|Mus musculus domesticus DNA, BAC clone: B6Ng01-062E16, 5' end.DH882738|Mus musculus domesticus DNA, BAC clone: B6Ng01-062E16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,688,549 - 47,689,774)(47,792,580 - 47,793,691)
sequence
ggaattcatcagaaatgctaacttcatctatttctttttccccacatttt
tattagatattttcttcgtttacatttcaaatgctatctccaaagtcccc
tataccctcccccgccctactcccctacctattccctcccacttcattgt
gctattattaaaaagagctggaaagtacctgattacattagttatttctt
atcatgccttttacttgtttcgttctgttcttcttcctaaggtattacag
tttaaactttaatgactagcagcatcaatatgtaaataaataaataactt
aaaatttttaaattacatttgtttgtttatttgtttgtttatttgtttat
tatctattcctttcatttttctgcgtgtttgtgagtgtgtgtaaaattta
cttaagttgaaatttgtagcattcagccagttcttctccgtcgcaggtcc
ttgatcatactcaggctaccaggattttcagcaactacatttgcactcta
atctaccttagtgttgctaggtttttgttacaatggtgttgatctgggtg
gacataaatttaggggagagcaatgggatttgacattgcatgaaatatct
ataaaggttactgaaatactatatatattacaaaactctcattacataat
tccagggataattggatcacagaaacacaaatcacattcagccgtcatga
tgggttaagcttcttcagctttgaagttcactctgatttaatgcatgaat
gtgcaggatactatatatgtgtataatatatccatatatccatatatata
tatatatatccatagtacccaaataataaggatctaaggatctttatata
tcaccaacatgttgtagataagagtcaccaagtaagaagactcaaatttg
agtgagtgcaaatgaaactgattgcgtctcagagatgttgtaaataacat
gtgaatcatgcaccatgacttgatgattctgttacagtaagtgaaagaaa
gcatctctgacgtcatcaaagtcctagtttgctcccataaaacagaagta
aaaatcaagagacctctggaggcgaagcagattttcacccagaacttcct
gttccccagtgatataggtggccctgcgtgatttactctggaaaatgggc
catatagttagtactatatttaactcctaccagacatgacttctcaaatt

gaattctctgttctctttgggacaatcttcctacattgtatgaaacaaaa
tgcttatggtgatgtgttgataacttcttcttacttgatgtttagcttct
atcacagtggtcaatagacagcacagagtggttaccataatgcatccact
tatctcagttattcctcccttgaggaagtactagaatctatgattcatac
catgagtattggtataaaattcatgtatcctcacattggactatcccaca
aaatgacaaaggtaacccttgtcaaatcaaaagaatgaaagtaggatcaa
gatcaaagataaaacataataaattaataatgacaatgctattatattcc
aaagcatgattcataagttatattgtaattctgagcggaaggaaaattat
agactccaattattcttacagagcacagatgaaattctaatgtggaatca
tcaaaaaaaattaaaagttctctttgagagatacaaatagaaataaaaat
catacaattcattaatcttgtggtatataaaaacaagaattataaccata
gtaaaagtcatctttgagagccaactatatatttatatgttgcctacaaa
gtactggctgttggaaaaccaacataaactatgtgtctagaaaaaatatt
ttccctttatgaatattatagatagatttctttctagtaattttttatag
attctgttaggtttctcctacagtccttcacatggttaggagtaatggtt
gccatgaataaactgatagtgaggccccattgctgaagaaaacagctaaa
caagtattgagcatggagaagtcaagctgaagcccaaatagatagatgct
ccagcttacattttatagtctttggtactctgaatgctaccagaagagaa
tcatgaacactaatcaagccacaaaccctttaatctacaacagttcccag
gtaagctgtactagtgccatggtagcacaaagcttgtggggataaaaagc
aaataactgcttatttaattaagcccactccatgataaggacctataact
gatatgcttgggtgactagaatgtgatcgaggtaatccaagaacgagggt
aaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_47688549_47689774
seq2: B6Ng01-062E16.b_47_1245

seq1  GAATTCATCAGAAATGCTAACTTCATCTATTTCTTTTTCCCCACATTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCAGAAATGCTAACTTCATCTATTTCTTTTTCCCCACATTTTT  50

seq1  ATTAGATATTTTCTTCGTTTACATTTCAAATGCTATCTCCAAAGTCCCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGATATTTTCTTCGTTTACATTTCAAATGCTATCTCCAAAGTCCCCT  100

seq1  ATACCCTCCCCCGCCCTACTCCCCTACCTATTCCCTCCCACTTCATTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCCTCCCCCGCCCTACTCCCCTACCTATTCCCTCCCACTTCATTGTG  150

seq1  CTATTATTAAAAAGAGCTGGAAAGTACCTGATTACATTAGTTATTTCTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTATTAAAAAGAGCTGGAAAGTACCTGATTACATTAGTTATTTCTTA  200

seq1  TCATGCCTTTTACTTGTTTCGTTCTGTTCTTCTTCCTAAGGTATTACAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCCTTTTACTTGTTTCGTTCTGTTCTTCTTCCTAAGGTATTACAGT  250

seq1  TTAAACTTTAATGACTAGCAGCATCAATATGTAAATAAATAAATAACTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACTTTAATGACTAGCAGCATCAATATGTAAATAAATAAATAACTTA  300

seq1  AAATTTTTAAATTACATTTGTTTGTTTATTTGTTTGTTTATTTGTTTATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTTAAATTACATTTGTTTGTTTATTTGTTTGTTTATTTGTTTATT  350

seq1  ATCTATTCCTTTCATTTTTCTGCGTGTTTGTGAGTGTGTGTAAAATTTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATTCCTTTCATTTTTCTGCGTGTTTGTGAGTGTGTGTAAAATTTAC  400

seq1  TTAAGTTGAAATTTGTAGCATTCAGCCAGTTCTTCTCCGTCGCAGGTCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTTGAAATTTGTAGCATTCAGCCAGTTCTTCTCCGTCGCAGGTCCT  450

seq1  TGATCATACTCAGGCTACCAGGATTTTCAGCAACTACATTTGCACTCTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCATACTCAGGCTACCAGGATTTTCAGCAACTACATTTGCACTCTAA  500

seq1  TCTACCTTAGTGTTGCTAGGTTTTTGTTACAATGGTGTTGATCTGGGTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCTTAGTGTTGCTAGGTTTTTGTTACAATGGTGTTGATCTGGGTGG  550

seq1  ACATAAATTTAGGGGAGAGCAATGGGATTTGACATTGCATGAAATATCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAATTTAGGGGAGAGCAATGGGATTTGACATTGCATGAAATATCTA  600

seq1  TAAAGGTTACTGAAATACTATATATATTACAAAACTCTCATTACATAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGTTACTGAAATACTATATATATTACAAAACTCTCATTACATAATT  650

seq1  CCAGGGATAATTGGATCACAGAAACACAAATCACATTCAGCCGTCATGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGATAATTGGATCACAGAAACACAAATCACATTCAGCCGTCATGAT  700

seq1  GGGTTAAGCTTCTTCAGCTTTGAAGTTCACTCTGATTTAATGCATGAATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTAAGCTTCTTCAGCTTTGAAGTTCACTCTGATTTAATGCATGAATG  750

seq1  TGCAGGATACTATATATGTGTATAATATATCCATATATCCATATATATAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGATACTATATATGTGTATAATATATCCATATATCCATATATATAT  800

seq1  ATATATATCCATAGTACCCAAATAATAAGGATCTAAGGATCTTTATATAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATCCATAGTACCCAAATAATAAGGATCTAAGGATCTTTATATAT  850

seq1  CACCAACATGTTGTAGATAAGAGTCACCAAAGTAAGAAGACTCAAATTTG  900
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CACCAACATGTTGTAGATAAGAGTCACC-AAGTAAGAAGACTCAAATTTG  899

seq1  AGTGAGTGCAAATGAAACTGATTTGCGTCCCAGAGATGTTGTAAATAACA  950
      ||||||||||||||||||||| ||||||| ||||||||||||||||||||
seq2  AGTGAGTGCAAATGAAACTGA-TTGCGTCTCAGAGATGTTGTAAATAACA  948

seq1  GTGTGAATCATGCACCATGACCTGATGATTCTGTTTACAAGTAAGTGAAA  1000
       |||||||||||||||||||| ||||||||||| |||| |||||||||||
seq2  -TGTGAATCATGCACCATGACTTGATGATTCTG-TTAC-AGTAAGTGAAA  995

seq1  GAGAGCATCTCTGACGTCATCAAAGTCCTAGTTTGCTCCCATAAAAACAG  1050
      || ||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GAAAGCATCTCTGACGTCATCAAAGTCCTAGTTTGCTCCCAT-AAAACAG  1044

seq1  AAGTAAAAAAATCAAGAGGACTTCTTGAAGGCAGATGCAGATTTTCAACC  1100
      ||||  ||||||||||| ||| || || |||| || |||||||||||  |
seq2  AAGT--AAAAATCAAGA-GACCTC-TGGAGGC-GAAGCAGATTTTCA--C  1087

seq1  ACAGAACTTCCTGTTACACCAGTGATGATAGTGTGCCCTGCAGTGATTTT  1150
       |||||||||||||| | |||||||| ||||   ||||||| |||| |||
seq2  CCAGAACTTCCTGTT-CCCCAGTGAT-ATAGGTGGCCCTGC-GTGA-TTT  1133

seq1  ACTCTGTAAAATATCTGTGCAATATAGTTATGTAACTATATTTAATCCTT  1200
      |||||| ||||    || || ||||||||| || |||||||||||  | |
seq2  ACTCTGGAAAA----TGGGCCATATAGTTA-GT-ACTATATTTAACTCCT  1177

seq1  AACAAAGACATGACTTCTTACAAATT  1226
      | |  |||||||||||||  ||||||
seq2  ACC--AGACATGACTTCT--CAAATT  1199

seq1: chr3_47792580_47793691
seq2: B6Ng01-062E16.g_66_1168 (reverse)

seq1  TTTACCCTCGTTCCTTGGACTACCTCGATCACATTCTTAGTCACCCAAGC  50
      |||||||||||| |||||| |||||||||||||||| |||||||||||||
seq2  TTTACCCTCGTT-CTTGGATTACCTCGATCACATTC-TAGTCACCCAAGC  48

seq1  AATATCAGGTATAGGGTCCTTATCATGGAGTGGGCCTTAATTTAAATAAA  100
       ||||||| |||| |||||||||||||||||||| ||||| |||||| ||
seq2  -ATATCAGTTATA-GGTCCTTATCATGGAGTGGG-CTTAA-TTAAAT-AA  93

seq1  GCAGTTATTTGCTTTTTTAATCCCCACAAGCTTTGTGCTACCATGGCACT  150
      |||||||||||||||||  |||||||||||||||||||||||||||||||
seq2  GCAGTTATTTGCTTTTT--ATCCCCACAAGCTTTGTGCTACCATGGCACT  141

seq1  AGTACAGCTTACCTGGGAACTGTTGTAGATTAAAGGGTTTGTGGCTTGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACAGCTTACCTGGGAACTGTTGTAGATTAAAGGGTTTGTGGCTTGAT  191

seq1  TAGTGTTCATGATTCTCTTCTGGTAGCATTCAGAGTACCAAAGACTATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTTCATGATTCTCTTCTGGTAGCATTCAGAGTACCAAAGACTATAA  241

seq1  AATGTAAGCTGGAGCATCTATCTATTTGGGCTTCAGCTTGACTTCTCCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAAGCTGGAGCATCTATCTATTTGGGCTTCAGCTTGACTTCTCCAT  291

seq1  GCTCAATACTTGTTTAGCTGTTTTCTTCAGCAATGGGGCCTCACTATCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAATACTTGTTTAGCTGTTTTCTTCAGCAATGGGGCCTCACTATCAG  341

seq1  TTTATTCATGGCAACCATTACTCCTAACCATGTGAAGGACTGTAGGAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTCATGGCAACCATTACTCCTAACCATGTGAAGGACTGTAGGAGAA  391

seq1  ACCTAACAGAATCTATAAAAAATTACTAGAAAGAAATCTATCTATAATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAACAGAATCTATAAAAAATTACTAGAAAGAAATCTATCTATAATAT  441

seq1  TCATAAAGGGAAAATATTTTTTCTAGACACATAGTTTATGTTGGTTTTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAAGGGAAAATATTTTTTCTAGACACATAGTTTATGTTGGTTTTCC  491

seq1  AACAGCCAGTACTTTGTAGGCAACATATAAATATATAGTTGGCTCTCAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCCAGTACTTTGTAGGCAACATATAAATATATAGTTGGCTCTCAAA  541

seq1  GATGACTTTTACTATGGTTATAATTCTTGTTTTTATATACCACAAGATTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGACTTTTACTATGGTTATAATTCTTGTTTTTATATACCACAAGATTA  591

seq1  ATGAATTGTATGATTTTTATTTCTATTTGTATCTCTCAAAGAGAACTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATTGTATGATTTTTATTTCTATTTGTATCTCTCAAAGAGAACTTTT  641

seq1  AATTTTTTTTGATGATTCCACATTAGAATTTCATCTGTGCTCTGTAAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTTTTGATGATTCCACATTAGAATTTCATCTGTGCTCTGTAAGAA  691

seq1  TAATTGGAGTCTATAATTTTCCTTCCGCTCAGAATTACAATATAACTTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGGAGTCTATAATTTTCCTTCCGCTCAGAATTACAATATAACTTAT  741

seq1  GAATCATGCTTTGGAATATAATAGCATTGTCATTATTAATTTATTATGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCATGCTTTGGAATATAATAGCATTGTCATTATTAATTTATTATGTT  791

seq1  TTATCTTTGATCTTGATCCTACTTTCATTCTTTTGATTTGACAAGGGTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTTTGATCTTGATCCTACTTTCATTCTTTTGATTTGACAAGGGTTA  841

seq1  CCTTTGTCATTTTGTGGGATAGTCCAATGTGAGGATACATGAATTTTATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGTCATTTTGTGGGATAGTCCAATGTGAGGATACATGAATTTTATA  891

seq1  CCAATACTCATGGTATGAATCATAGATTCTAGTACTTCCTCAAGGGAGGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATACTCATGGTATGAATCATAGATTCTAGTACTTCCTCAAGGGAGGA  941

seq1  ATAACTGAGATAAGTGGATGCATTATGGTAACCACTCTGTGCTGTCTATT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTGAGATAAGTGGATGCATTATGGTAACCACTCTGTGCTGTCTATT  991

seq1  GACCACTGTGATAGAAGCTAAACATCAAGTAAGAAGAAGTTATCAACACA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCACTGTGATAGAAGCTAAACATCAAGTAAGAAGAAGTTATCAACACA  1041

seq1  TCACCATAAGCATTTTGTTTCATACAATGTAGGAAGATTGTCCCAAAGAG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCATAAGCATTTTGTTTCATACAATGTAGGAAGATTGTCCCAAAGAG  1091

seq1  AACAGAGAATTC  1112
      ||||||||||||
seq2  AACAGAGAATTC  1103