BAC Information

Click to search

BAC

Clone NameB6Ng01-062O21
Chromosome3 (Build37)
Map Location 41,057,818 - 41,058,366
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-062O21.bB6Ng01-062O21.g
ACCDH883175DH883176
length9561,025
definitionDH883175|Mus musculus domesticus DNA, BAC clone: B6Ng01-062O21, 5' end.DH883176|Mus musculus domesticus DNA, BAC clone: B6Ng01-062O21, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcctgatctttccaagacttttatcatgaatgggtgttggattttg
tcaaatgctttctcagcatctaacgagatgatcatgtggtatttgtcttt
gagtttgtttatataatggattacgttgatggatttccatatattaaacc
atccttgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagtgagaatttttttttttatttatta
tttttgcattgatattcataagggaaattggtctgaagttctctatcttt
gttggatctttctgtggtttaggtatcagagtaattgtggcttcatagaa
tgagttgggtagagtaccttctacttctattttgtggaataatttgtgca
gaactggaattagatcttctttgaaggtctgatagaactctgcactaaac
ccatctggtcctgggctttttttggctgggagactattaatgactgcttc
aatttctttaggggatatgggactgtttagatcattaacctgatcctgat
ttaactttaatacctggtatctgtctagaaatttgtccattttatccaga
ttttccagttttgttgagtatagccttttgtaaaaggatctgatggtgtt
ttggatttcttcaggatctgttgttatgtctccctttccatctctgattt
tgttaatcaggatgctgtccctgtgccctctagtgagtctagctaagggt
ttatctatcttgttgattttctcaaagaaccaactcctcgtttggttaat
tctttgaatagttcttcttgtttccacttggttgattttgcccttgagtt
tcattatttcttgctgtctacttctcttgggtgaattttcttcctttttt
tagagcatttagatgtgtagtcaggctgctagtgtgtgctctatctagtt
cttttt
gaattctttggtttctccatctatggtaattgagagttttgctggatata
gtagcctgggctggcatttgtgttctcttagggtctgtataacatctgtc
caggatcttctggctttcatagtctctggtgaaaagtctggtgtaattct
gataggcctgcctttatatgttacttgaactttttcccttactgctttta
atattctatctttatttagtgcatttgttgttctgattattatgtgtcgg
gaggaatttcttttctggtccagtctatttggagttctgtaggcttcttg
tatgttcacgggcatgtctttctttaggttttggaagttttcttctataa
ttttgttgaagatatttgccctctctttaagttgaaaatcttcattctca
tctactactattatctgtaggtttggtcttctcattgtgtcctggattta
ctggatgttttgagttagtatctttttgcattttgtatttgttatgccta
tgttctctatggaatcttctgcacctgagattctctcttctatctcttgt
attctattgctgatgcttgcatctatggttccagatttctttcctagggt
ttctatctccagtgttgccttattttgggttttctttattgtgtctactt
ccctttttaggtcttggatggttttattcaattccatcacctgtttggtc
gtgtttatctgcaattctttaagggctttttatgcttcctctttaaggtc
ttctacctgtttagcagtgctctcctgtatttctttaagtgagttattga
agtccttcttgatgtcctctaccatcatcatgagataggcttttaaatca
ggaactgtctttttgggtgtgttggggtgctcaggactggtgggggtggg
agtgctgcgttctgattaggtgagtggtttggtttctgtagtaagatctt
ataattgcttttgccctctggtaactccaaattataggtgaattgtgtcg
gttaccacttggcccccggtgtttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41057818_41058366
seq2: B6Ng01-062O21.b_49_598 (reverse)

seq1  ATCAGGATCAAGTTAACGATTTAAACAGTCGCATATCCCCTAAAGAAACA  50
      |||||||||| ||||| ||| ||||||||| |||||||||||||||||  
seq2  ATCAGGATCAGGTTAATGATCTAAACAGTCCCATATCCCCTAAAGAAATT  50

seq1  GAAGAAGTCATTAATAGTCTCCCAGCCAAAACAAACCCAGGACCAGATGG  100
      |||| |||||||||||||||||||||||||| || |||||||||||||||
seq2  GAAGCAGTCATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGATGG  100

seq1  TTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTC  150
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTC  150

seq1  TGCACAAATTATTCCACAAAATAGAAGTAGAAGGTACTCTACCTAACTCA  200
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TGCACAAATTATTCCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCA  200

seq1  TTCTATGAAGCCACAATTACTCTGATACCTAAACCACAGAAAGATGCAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TTCTATGAAGCCACAATTACTCTGATACCTAAACCACAGAAAGATCCAAC  250

seq1  AAAGATAGAGAACTTCAGACCAATTTCCCTTATGAATATCGATGCAAAAA  300
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AAAGATAGAGAACTTCAGACCAATTTCCCTTATGAATATCAATGCAAAAA  300

seq1  TACTCAAT-------AAAATTCTCGCTAACCGAATCCAAGAACACATTAA  343
      || | |||       ||||||||| |||||||||||||||||||||||||
seq2  TAATAAATAAAAAAAAAAATTCTCACTAACCGAATCCAAGAACACATTAA  350

seq1  AGCAACCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGAT  393
      ||||| ||||||||||||||||||||||||||||||||||||||| ||||
seq2  AGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAAGGAT  400

seq1  GGTTTAATATACGGAAATCCATCAACGCAATCCATTATATAAACAAACTC  443
      ||||||||||| ||||||||||||||| ||||||||||||||||||||||
seq2  GGTTTAATATATGGAAATCCATCAACGTAATCCATTATATAAACAAACTC  450

seq1  AAAGACAAAAACCACATGATCACCTCGTTAGATGCTGAGAAAGTGTTTGA  493
      ||||||||| |||||||||||| ||||||||||||||||||||  |||||
seq2  AAAGACAAATACCACATGATCATCTCGTTAGATGCTGAGAAAGCATTTGA  500

seq1  CAAAATCCAACACCCATTCATGATAAAAAAAAAAGTCTTGGAAAGATCAG  543
      ||||||||||||||||||||||||      ||||||||||||||||||||
seq2  CAAAATCCAACACCCATTCATGAT------AAAAGTCTTGGAAAGATCAG  544

seq1  GAATTC  549
      ||||||
seq2  GAATTC  550