BAC Information

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BAC

Clone NameB6Ng01-063A20
Chromosome3 (Build37)
Map Location 130,174,343 - 130,305,914
singlet/doubletdoublet
Overlap geneCol25a1
Upstream geneElovl6, LOC100043758, Egf, Gm421, Rrh, Nola1, Cfi, Pla2g12a, Casp6, Ccdc109b, Sec24b, EG668844, EG668845
Downstream geneAgxt2l1, 2310008M10Rik, Rpl34, LOC546811, LOC545568, Lef1, 6720418B01Rik, Hadh, Cyp2u1, Sgms2, LOC100043443, Papss1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-063A20.bB6Ng01-063A20.g
ACCDH883265DH883266
length1,0841,040
definitionDH883265|Mus musculus domesticus DNA, BAC clone: B6Ng01-063A20, 5' end.DH883266|Mus musculus domesticus DNA, BAC clone: B6Ng01-063A20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(130,304,807 - 130,305,914)(130,174,343 - 130,175,396)
sequence
agcagaagcaaaagcttctcaacttgctctcttattatatcctcatcgtg
tgcagggattttgttctaaagagaacaggggctgtggctatggctcaggt
ggtagagaattcaactcccttctgctaactgcaagcttttacttctcggt
ctacttagtaggtgacaatatgcataccaccaagttggtgatatcacttc
caaatgtgtaggaagtccaaatactcatagcacatccatttaggaaccgc
atccaggcatgctgtaaattagccatgttgatgaactattatgcaaatta
aattcatataccccagtgagttttgttactttgaacctcattattcattt
attgatttggcttcatgcttttttttttttttctctctagtagaggagac
aagcatatactcattaaaaaacctgctatgtgctaagtggtgataagcac
aagacatgactgaagcatagggggatctcatcttggcagcaaggcatgtt
tagtaagttgatgcacatgttgagtcttagaagaacagcatgtgttcttc
agctgggtcaaggacctgggaatggggacttcttcaggcttgaagagcag
ttaaagatttgttgagtgggaaaacttttgggtaagagtttttggtctgc
aagataggatgttctatagacctagtcatgtgtggtcatatgggctccat
attccacaccaaagggtctgcatgaagagggagtgattactgggagacgt
gaagccagagatggaagatgagcagttcaagctccctgcagagctgtcct
cagtaaagttgctttaatgcacactcttgggtataaaaactacagagtgc
tcatgatttcttttttacacttatttattgtgtgtgcgcgtgcatgccac
agtgtgcacgtgaaggtcagcggcatgctttggaattggttctgtctttc
ttcagtgatagaactctgcttcagtttgaggcagagcttactgtactcat
ctctctgggcatggggaaagatggcagagtctcgaagcatgttcttcatg
agaaatatcacatgaaatcttcagcttctttttt
gaattcagaatatttaggggtgaaatatgtttgagttattctagtatttt
ggcttgtttctggattctttcactgtgtttttctgggacacactttggtt
ttttttcccatgccccctcggaccatctgtgcaccaggcacgtcttctga
gatgtaaagctgagctgagatgcggggcctctccatctcacttccttaga
gaaggctctgactaatgatggggaaatggcctgcttgttgaaaagtgcac
ctctgcacggaaagcgaggctaactaaaagtcaccatcgtggaaagatgg
gtcctcaaactgagtggtcagcaccaatgcaggcagcacacagtctgcct
gtggggaggtataaagccttctgtaagatgaaatttattctcaccaccaa
atgatcttaaaacttacccattctgctccaaaatgtaacaatatctgttt
tacatttaaaaaaaaaaaaagaacaaaatcaaaaacaaaacaaaacaaaa
accttggacaaattttacctatgatttaaagaaacacattaattttttta
cttttaatcttttttattagatattttatttacatttcaaatattatccc
ctttcccagtttcccctccaaaaaccccctatcccatcactcctccccac
tgctcaccaacccactcactcccattcctggttctggcattctcctacat
gatggtttagtccatcaaccaaactctggggagtagtggttggttcatat
tgttcctcctatggggctgcaaaccccttcagctccttgggtcctttctc
tcgttcctcaattggggacctgttctcggtcaatggttggctgagagcat
ccacctttgtatttgtcagcactggcagagcttctcaagagacagctatg
tcagctcctgtcagcaagcacttgtggcatcacaatagtgtttgatttga
tgactgtaatgggggtgatcccaggtgggacagtctctggatggccttta
cctcatgaataaatctactcatcatttaagaaaaaaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_130304807_130305914
seq2: B6Ng01-063A20.b_57_1140 (reverse)

seq1  AAAAAAGAAAGCTAGAAAGATTTTTCATGTGATATTTCTCATGAAGAACA  50
      ||||||| |||||   ||||  ||||||||||||||||||||||||||||
seq2  AAAAAAG-AAGCT--GAAGA--TTTCATGTGATATTTCTCATGAAGAACA  45

seq1  TGGCCTTTTCGAGGACTCTGCCCATCTATCCCCATGGCCCAGAGAGATGA  100
      ||     ||||| ||||||| |||||| ||||||| ||||||||||||||
seq2  TG----CTTCGA-GACTCTG-CCATCTTTCCCCAT-GCCCAGAGAGATGA  88

seq1  GTTAACAGGTAAGGCTCTTGCCCTCAAACCTGAAGCAGAGTTCTATCCAC  150
      ||  ||| |||| |||||   ||||||| ||||||||||||||||| |||
seq2  GT--ACA-GTAA-GCTCT--GCCTCAAA-CTGAAGCAGAGTTCTAT-CAC  130

seq1  TTGGAGGAAAGACAGAACCAATTCCAAAGCATTGCCCGCTGACCTTCACG  200
      |  || ||||||||||||||||||||||||||   |||||||||||||||
seq2  T--GAAGAAAGACAGAACCAATTCCAAAGCAT--GCCGCTGACCTTCACG  176

seq1  TGCACACTGTGGCATGCACGCGCACACACAATAAATAAGTGTAAAAAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACACTGTGGCATGCACGCGCACACACAATAAATAAGTGTAAAAAAGA  226

seq1  AATCATGAGCACTCTGTAGTTTTTATACCCAAGAGTGTGCATTAAAGCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATGAGCACTCTGTAGTTTTTATACCCAAGAGTGTGCATTAAAGCAA  276

seq1  CTTTACTGAGGACAGCTCTGCAGGGAGCTTGAACTGCTCATCTTCCATCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACTGAGGACAGCTCTGCAGGGAGCTTGAACTGCTCATCTTCCATCT  326

seq1  CTGGCTTCACGTCTCCCAGTAATCACTCCCTCTTCATGCAGACCCTTTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTTCACGTCTCCCAGTAATCACTCCCTCTTCATGCAGACCCTTTGG  376

seq1  TGTGGAATATGGAGCCCATATGACCACACATGACTAGGTCTATAGAACAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAATATGGAGCCCATATGACCACACATGACTAGGTCTATAGAACAT  426

seq1  CCTATCTTGCAGACCAAAAACTCTTACCCAAAAGTTTTCCCACTCAACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATCTTGCAGACCAAAAACTCTTACCCAAAAGTTTTCCCACTCAACAA  476

seq1  ATCTTTAACTGCTCTTCAAGCCTGAAGAAGTCCCCATTCCCAGGTCCTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTAACTGCTCTTCAAGCCTGAAGAAGTCCCCATTCCCAGGTCCTTG  526

seq1  ACCCAGCTGAAGAACACATGCTGTTCTTCTAAGACTCAACATGTGCATCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGCTGAAGAACACATGCTGTTCTTCTAAGACTCAACATGTGCATCA  576

seq1  ACTTACTAAACATGCCTTGCTGCCAAGATGAGATCCCCCTATGCTTCAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTACTAAACATGCCTTGCTGCCAAGATGAGATCCCCCTATGCTTCAGT  626

seq1  CATGTCTTGTGCTTATCACCACTTAGCACATAGCAGGTTTTTTAATGAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCTTGTGCTTATCACCACTTAGCACATAGCAGGTTTTTTAATGAGT  676

seq1  ATATGCTTGTCTCCTCTACTAGAGAGAAAAAAAAAAAAAAGCATGAAGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCTTGTCTCCTCTACTAGAGAGAAAAAAAAAAAAAAGCATGAAGCC  726

seq1  AAATCAATAAATGAATAATGAGGTTCAAAGTAACAAAACTCACTGGGGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAATAAATGAATAATGAGGTTCAAAGTAACAAAACTCACTGGGGTA  776

seq1  TATGAATTTAATTTGCATAATAGTTCATCAACATGGCTAATTTACAGCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAATTTAATTTGCATAATAGTTCATCAACATGGCTAATTTACAGCAT  826

seq1  GCCTGGATGCGGTTCCTAAATGGATGTGCTATGAGTATTTGGACTTCCTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGATGCGGTTCCTAAATGGATGTGCTATGAGTATTTGGACTTCCTA  876

seq1  CACATTTGGAAGTGATATCACCAACTTGGTGGTATGCATATTGTCACCTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTTGGAAGTGATATCACCAACTTGGTGGTATGCATATTGTCACCTA  926

seq1  CTAAGTAGACCGAGAAGTAAAAGCTTGCAGTTAGCAGAAGGGAGTTGAAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGTAGACCGAGAAGTAAAAGCTTGCAGTTAGCAGAAGGGAGTTGAAT  976

seq1  TCTCTACCACCTGAGCCATAGCCACAGCCCCTGTTCTCTTTAGAACAAAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTACCACCTGAGCCATAGCCACAGCCCCTGTTCTCTTTAGAACAAAA  1026

seq1  TCCCTGCACACGATGAGGATATAATAAGAGAGCAAGTTGAGAAGCTTTTG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGCACACGATGAGGATATAATAAGAGAGCAAGTTGAGAAGCTTTTG  1076

seq1  CTTCTGCT  1108
      ||||||||
seq2  CTTCTGCT  1084

seq1: chr3_130174343_130175396
seq2: B6Ng01-063A20.g_67_1106

seq1  GAATTCAGAATATTTAGGGGTGAAATATGTTTGAGTTATTCTAGTATTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAATATTTAGGGGTGAAATATGTTTGAGTTATTCTAGTATTTT  50

seq1  GGCTTGTTTCTGGATTCTTTCACTGTGTTTTTCTGGGACACACTTTGGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGTTTCTGGATTCTTTCACTGTGTTTTTCTGGGACACACTTTGGTT  100

seq1  TTTTTTCCCATGCCCCCTCGGACCATCTGTGCACCAGGCACGTCTTCTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCCCATGCCCCCTCGGACCATCTGTGCACCAGGCACGTCTTCTGA  150

seq1  GATGTAAAGCTGAGCTGAGATGCGGGGCCTCTCCATCTCACTTCCTTAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTAAAGCTGAGCTGAGATGCGGGGCCTCTCCATCTCACTTCCTTAGA  200

seq1  GAAGGCTCTGACTAATGATGGGGAAATGGCCTGCTTGTTGAAAAGTGCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCTCTGACTAATGATGGGGAAATGGCCTGCTTGTTGAAAAGTGCAC  250

seq1  CTCTGCACGGAAAGCGAGGCTAACTAAAAGTCACCATCGTGGAAAGATGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCACGGAAAGCGAGGCTAACTAAAAGTCACCATCGTGGAAAGATGG  300

seq1  GTCCTCAAACTGAGTGGTCAGCACCAATGCAGGCAGCACACAGTCTGCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCAAACTGAGTGGTCAGCACCAATGCAGGCAGCACACAGTCTGCCT  350

seq1  GTGGGGAGGTATAAAGCCTTCTGTAAGATGAAATTTATTCTCACCACCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGAGGTATAAAGCCTTCTGTAAGATGAAATTTATTCTCACCACCAA  400

seq1  ATGATCTTAAAACTTACCCATTCTGCTCCAAAATGTAACAATATCTGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATCTTAAAACTTACCCATTCTGCTCCAAAATGTAACAATATCTGTTT  450

seq1  TACATTTAAAAAAAAAAAAAGAACAAAATCAAAAACAAAACAAAACAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTAAAAAAAAAAAAAGAACAAAATCAAAAACAAAACAAAACAAAA  500

seq1  ACCTTGGACAAATTTTACCTATGATTTAAAGAAACACATTAATTTTTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGGACAAATTTTACCTATGATTTAAAGAAACACATTAATTTTTTTA  550

seq1  CTTTTAATCTTTTTTATTAGATATTTTATTTACATTTCAAATATTATCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAATCTTTTTTATTAGATATTTTATTTACATTTCAAATATTATCCC  600

seq1  CTTTCCCAGTTTCCCCTCCAAAAACCCCCTATCCCATCACTCCTCCCCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCCAGTTTCCCCTCCAAAAACCCCCTATCCCATCACTCCTCCCCAC  650

seq1  TGCTCACCAACCCACTCACTCCCATTCCTGGTTCTGGCATTCTCCTACAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCACCAACCCACTCACTCCCATTCCTGGTTCTGGCATTCTCCTACAT  700

seq1  GATGGTTTAGTCCATCAACCAAACTCTGGGGAGTAGTGGTTGGTTCATAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTTTAGTCCATCAACCAAACTCTGGGGAGTAGTGGTTGGTTCATAT  750

seq1  TGTTCCTCCTATGGGGCTGCAAACCCCTTCAGCTCCTTGGGTCCTTTCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCTCCTATGGGGCTGCAAACCCCTTCAGCTCCTTGGGTCCTTTCTC  800

seq1  TCGTTCCTCAATTGGGGACCCTGTTCTCGGTCCAATGGTTGGCTGAGAGC  850
      |||||||||||||||||| |||||||||||| ||||||||||||||||||
seq2  TCGTTCCTCAATTGGGGA-CCTGTTCTCGGT-CAATGGTTGGCTGAGAGC  848

seq1  ATCCACCTTTGTATTTGTCAGGCACTGGCAGAGCTTCTCAGGAGACAGCT  900
      |||||||||||||||||||| ||||||||||||||||||| |||||||||
seq2  ATCCACCTTTGTATTTGTCA-GCACTGGCAGAGCTTCTCAAGAGACAGCT  897

seq1  ATGTCAGGCTCCTGTCAGCAAGCACTTGTTGGCATCCACAATAGTGTTTG  950
      |||||| ||||||||||||||||||||| |||||| ||||||||||||||
seq2  ATGTCA-GCTCCTGTCAGCAAGCACTTG-TGGCAT-CACAATAGTGTTTG  944

seq1  ATTTTGATGACTGTAAATGGGGTGGATCCCCAGGTGGGACAGTCTCTGGA  1000
      | |||||||||||| |||||||  ||| ||||||||||||||||||||||
seq2  A-TTTGATGACTGT-AATGGGGGTGAT-CCCAGGTGGGACAGTCTCTGGA  991

seq1  TGGCCTTTTACCTCATGATTTAAATTCTACCTCATCATTTAAAGAAAAAA  1050
      ||||| |||||||||||| |  || |||| |||||||||| |||||||||
seq2  TGGCC-TTTACCTCATGAAT--AAATCTA-CTCATCATTT-AAGAAAAAA  1036

seq1  AAAA  1054
      ||||
seq2  AAAA  1040