BAC Information

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BAC

Clone NameB6Ng01-064A22
Chromosome3 (Build37)
Map Location 78,927,328 - 79,066,833
singlet/doubletdoublet
Overlap geneRapgef2, LOC100041741
Upstream geneLOC626479, LOC100041691, LOC383883, LOC100041748, LOC100041716, LOC100041725, LOC100041766
Downstream geneLOC100041793, LOC667613, Ppid, Etfdh, 4930579G24Rik, Rxfp1, Tmem144, 1110032E23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-064A22.bB6Ng01-064A22.g
ACCDH883961DH883962
length1,119984
definitionDH883961|Mus musculus domesticus DNA, BAC clone: B6Ng01-064A22, 5' end.DH883962|Mus musculus domesticus DNA, BAC clone: B6Ng01-064A22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,927,328 - 78,928,458)(79,065,839 - 79,066,833)
sequence
gaattctgcagttttggctgtctgaagcgcactgagaactgactgaatat
ttatgtgtattactcagtgaccaaagccagtaggaatgtatgcttgaaaa
ctgcaagaaaaagaatacatgtttctttttcttctcctttcctttctcta
gacacaagtgaaatgcagtcaagcacacgctacatcatattcccttaaca
ctatttcttctgccagtgccccaccgtatctcatgaccttctgtaatcat
ttgcaaagatttacttacataataaattgagcaattatcttaggtacatt
ccttgtaaagtaataccccctttaatgttttattacactgcttagctggg
tctgctttcttcagcttctgcttctctctgaacttttctggttcctgtat
atatgtgtattaatttattatcctagatgtacatcagagaacagaatagc
attcatccaggtacacgcttaacaatggactaaatgtaatctgtgatgtg
tgcacagacacatagacacatactgacacagacacacacacacaaaacac
acacacacacacacacacacacacacacacacacacacgagcaaaagcac
taaaaaccatgaaacatctttaagtataaaccactgacttctataaaatg
ggactcactctgctggggtggtagaaggcactccagtcccttgaggccac
tgcccagcttctgcccttgtttgcctctctcaatgatttaatatcccttc
ctatcttttctgcatgctgtagtcagaacaaaccttgaagacatgataga
aaacctatacagtcgtggtattcccctatcttctactggcttcctctact
cttagaatacttaatacttagcacactcctgacagtctcatctcactgct
ttctctgatcatttcctcatcttttcctatcagtctcagcagtgggtgca
tagagagttagcttagatatttcaccactttactcagcctctccctgtgt
ccacattcctgctcctgatgagtagctcatcttcggtgctcattccccca
cccacctcaagtcacaagtcctggggggggctctcttgacttctagacta
tgccatccgaacgtccatc
gaattctagattgttgtgagttaccatgttggtgctgggaactgaaccca
gtcctcttaactattaagccattgctctagccctgatatttaataatttt
aataacatgtaagattaactgaaagctaatttgtcaccagagaccatgtt
aagcacttgttgctattggtatttttagctcttaggtttctttattcccc
ccccccccccgtcgtctctctccttccctccctccctcccttctctctgt
ctctctcgctctctttctttttttctgtgtgtgtttggttgatttttctt
tttttttctttgtttgtttgtttgtttgtttgtatgtgtacacttaattc
caccatcagagttggcatgttgaagagaactctgacgtccagttgagttg
ttcaggctttggtaccttgagctgtattaaggattgattgcctttttggt
tggtctgtgtgtggtagagaaccgtttttttttttttttttgtttttttc
tttttttctttttcttttcctacaagtaaactagccaggagtctgggact
gtggggaacagaattggcaggcttcttatttccactcctggtgaaatttc
agtatggagtctgctaacactgtctctgtgtaggggcttagctggaaatc
ttggcttccagtgccagactgcagtgactagggaacagcctctcatctag
ggagccagcttttctggttggaaccacagccaggtgggtttgcatgggag
agtaaacctttcttggatttctaacctttgcctagggatccttggcttca
gttgtcacgactctgttgtctgatgtgtgtcagaaagacagtttggatag
tgtttgaccaggattgagaaacatttattcaatagcctagacagcttgaa
agattgtttcttatgagaagccctgctccagatcctttcagttatgtact
tgagaacactgggcctgtctggtccagctggtca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_78927328_78928458
seq2: B6Ng01-064A22.b_48_1166

seq1  GAATTCTGCAGTTTTGGCTGTCTGAAGCGCACTGAGAACTGACTGAATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCAGTTTTGGCTGTCTGAAGCGCACTGAGAACTGACTGAATAT  50

seq1  TTATGTGTATTACTCAGTGACCAAAGCCAGTAGGAATGTATGCTTGAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTGTATTACTCAGTGACCAAAGCCAGTAGGAATGTATGCTTGAAAA  100

seq1  CTGCAAGAAAAAGAATACATGTTTCTTTTTCTTCTCCTTTCCTTTCTCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAAGAAAAAGAATACATGTTTCTTTTTCTTCTCCTTTCCTTTCTCTA  150

seq1  GACACAAGTGAAATGCAGTCAAGCACACGCTACATCATATTCCCTTAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACAAGTGAAATGCAGTCAAGCACACGCTACATCATATTCCCTTAACA  200

seq1  CTATTTCTTCTGCCAGTGCCCCACCGTATCTCATGACCTTCTGTAATCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTCTTCTGCCAGTGCCCCACCGTATCTCATGACCTTCTGTAATCAT  250

seq1  TTGCAAAGATTTACTTACATAATAAATTGAGCAATTATCTTAGGTACATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAAAGATTTACTTACATAATAAATTGAGCAATTATCTTAGGTACATT  300

seq1  CCTTGTAAAGTAATACCCCCTTTAATGTTTTATTACACTGCTTAGCTGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTAAAGTAATACCCCCTTTAATGTTTTATTACACTGCTTAGCTGGG  350

seq1  TCTGCTTTCTTCAGCTTCTGCTTCTCTCTGAACTTTTCTGGTTCCTGTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTTTCTTCAGCTTCTGCTTCTCTCTGAACTTTTCTGGTTCCTGTAT  400

seq1  ATATGTGTATTAATTTATTATCCTAGATGTACATCAGAGAACAGAATAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTGTATTAATTTATTATCCTAGATGTACATCAGAGAACAGAATAGC  450

seq1  ATTCATCCAGGTACACGCTTAACAATGGACTAAATGTAATCTGTGATGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATCCAGGTACACGCTTAACAATGGACTAAATGTAATCTGTGATGTG  500

seq1  TGCACAGACACATAGACACATACTGACACAGACACACACACACAAAACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACAGACACATAGACACATACTGACACAGACACACACACACAAAACAC  550

seq1  ACACACACACACACACACACACACACACACACACACACGAGCAAAAGCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACACACACACGAGCAAAAGCAC  600

seq1  TAAAAACCATGAAACATCTTTAAGTATAAACCACTGACTTCTATAAAATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAACCATGAAACATCTTTAAGTATAAACCACTGACTTCTATAAAATG  650

seq1  GGACTCACTCTGCTGGGGTGGTAGAAGGCACTCCAGTCCCTTGAGGCCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTCACTCTGCTGGGGTGGTAGAAGGCACTCCAGTCCCTTGAGGCCAC  700

seq1  TGCCCAGCTTCTGCCCTTGTTTGCCTCTCTCAATGATTTAATATCCCTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCAGCTTCTGCCCTTGTTTGCCTCTCTCAATGATTTAATATCCCTTC  750

seq1  CTATCTTTTCTGCATGCTGTAGTCAGAACAAACCTTGAAGACATGATAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTTTTCTGCATGCTGTAGTCAGAACAAACCTTGAAGACATGATAGA  800

seq1  AAACCTATACAGTCGTGGTATTCCCCTATCTTCTACTGGCTTCCTCTACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTATACAGTCGTGGTATTCCCCTATCTTCTACTGGCTTCCTCTACT  850

seq1  CTTAGAATACTTAATACTTAGCACACTCCTGACAGTCTCATCTCACTGCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGAATACTTAATACTTAGCACACTCCTGACAGTCTCATCTCACTGCT  900

seq1  TTCTCTGATCATTTCCTCATCTTTTCCTATCAGTCTCAGCAGTGGGTGCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGATCATTTCCTCATCTTTTCCTATCAGTCTCAGCAGTGGGTGCA  950

seq1  TAGAGAGTTAGCTTAGATAATTTCAACCACTTTACTCAGGGCCTCTCCCT  1000
      |||||||||||||||||| ||||| |||||||||||||  ||||||||||
seq2  TAGAGAGTTAGCTTAGAT-ATTTC-ACCACTTTACTCA--GCCTCTCCCT  996

seq1  GGTGTCCACATTCCCTGCTCCTGGATGAGTAAGCTCAATCTCCGTGCTCA  1050
       ||||||||||| ||||||||| ||||||| ||||||   || |||||||
seq2  -GTGTCCACATT-CCTGCTCCT-GATGAGT-AGCTCATCTTCGGTGCTCA  1042

seq1  TTCTCCCA-CCACCTCAAGTCACAAGTTCCTGGGGGGTGCTCCTGTGACT  1099
      ||| |||| ||||||||||||||||| |||||||||| ||||   |||||
seq2  TTCCCCCACCCACCTCAAGTCACAAG-TCCTGGGGGGGGCTCTCTTGACT  1091

seq1  TCTAGACTATTGCCCATCACAGAACGTCCATC  1131
      ||||||||||   ||||  | |||||||||||
seq2  TCTAGACTAT--GCCAT--CCGAACGTCCATC  1119

seq1: chr3_79065839_79066833
seq2: B6Ng01-064A22.g_69_1052 (reverse)

seq1  TGACCAGACTGGACCAGACCAGACCACAGTGTTACTCAAGTCACATAACT  50
      ||||||| |||||||||| ||| || ||||||| ||||||| ||||||| 
seq2  TGACCAG-CTGGACCAGA-CAGGCC-CAGTGTT-CTCAAGT-ACATAAC-  44

seq1  TGAAAGGATCT-GAGCAGGGCTCCTACATAAGATACAATCTTTCAAGCTG  99
      ||||||||||| |||||||||| || ||||||| ||||||||||||||||
seq2  TGAAAGGATCTGGAGCAGGGCTTCT-CATAAGAAACAATCTTTCAAGCTG  93

seq1  TTCTTAGGCTATCTGAATAAATGTTTCTCAATCCTGGTCAAACACTAATC  149
      |   |||||||| ||||||||||||||||||||||||||||||||||  |
seq2  T--CTAGGCTAT-TGAATAAATGTTTCTCAATCCTGGTCAAACACTATCC  140

seq1  CAACTGTCTCTCTGAACACACATCAGACAACAGAGTCGCTGACAACTGAA  199
       |||||||| |||| ||||||||||||||||||||||| |||||||||||
seq2  AAACTGTCTTTCTG-ACACACATCAGACAACAGAGTCG-TGACAACTGAA  188

seq1  GCC-AGGATCCCTAGGGCAAAGGTTAGAAATGCCAGGAATGTTCTACTCT  248
      ||| |||||||||| |||||||||||||||| ||| ||| | | ||||||
seq2  GCCAAGGATCCCTA-GGCAAAGGTTAGAAAT-CCAAGAAAGGTTTACTCT  236

seq1  CCCATGCAAA-CCACCCTGCTGTGGCTTCCAACCAG-AAAGCTGGCTCCC  296
      |||||||||| |||||  ||||||| |||||||||| |||||||||||||
seq2  CCCATGCAAACCCACCTGGCTGTGG-TTCCAACCAGAAAAGCTGGCTCCC  285

seq1  TAGATGAGAGGCTGTTCCCTAGTCACTGCAGTCTGGCACTGGAAGCCAAG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGAGAGGCTGTTCCCTAGTCACTGCAGTCTGGCACTGGAAGCCAAG  335

seq1  ATCTCCAGCTAAGCCCCTACACAGAGACAGTGTTAGCAGACTCCATACTG  396
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCAGCTAAGCCCCTACACAGAGACAGTGTTAGCAGACTCCATACTG  385

seq1  AAATTTCACCAGGAGTGGAAATAAGAAGCCTGCCAATTCTGTTCCCCACA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTCACCAGGAGTGGAAATAAGAAGCCTGCCAATTCTGTTCCCCACA  435

seq1  GTCCCAGACTCCTGGCTAGTTTACTTGTAGGAAAAGAAAAAGAAAAAAAG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCAGACTCCTGGCTAGTTTACTTGTAGGAAAAGAAAAAGAAAAAAAG  485

seq1  AAAAAAACAAAAAAAAAAAAAAAAACGGTTCTCTACCACACACAGACCAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAACAAAAAAAAAAAAAAAAACGGTTCTCTACCACACACAGACCAA  535

seq1  CCAAAAAGGCAATCAATCCTTAATACAGCTCAAGGTACCAAAGCCTGAAC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAAGGCAATCAATCCTTAATACAGCTCAAGGTACCAAAGCCTGAAC  585

seq1  AACTCAACTGGACGTCAGAGTTCTCTTCAACATGCCAACTCTGATGGTGG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAACTGGACGTCAGAGTTCTCTTCAACATGCCAACTCTGATGGTGG  635

seq1  AATTAAGTGTACACATACAAACAAACAAACAAACAAACAAAGAAAAAAAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAGTGTACACATACAAACAAACAAACAAACAAACAAAGAAAAAAAA  685

seq1  AGAAAAATCAACCAAACACACACAGAAAAAAAGAAAGAGAGCGAGAGAGA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAATCAACCAAACACACACAGAAAAAAAGAAAGAGAGCGAGAGAGA  735

seq1  CAGAGAGAAGGGAGGGAGGGAGGGAAGGAGAGAGACGACGGGGGGGGGGG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAGAAGGGAGGGAGGGAGGGAAGGAGAGAGACGACGGGGGGGGGGG  785

seq1  GGGAATAAAGAAACCTAAGAGCTAAAAATACCAATAGCAACAAGTGCTTA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATAAAGAAACCTAAGAGCTAAAAATACCAATAGCAACAAGTGCTTA  835

seq1  ACATGGTCTCTGGTGACAAATTAGCTTTCAGTTAATCTTACATGTTATTA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGTCTCTGGTGACAAATTAGCTTTCAGTTAATCTTACATGTTATTA  885

seq1  AAATTATTAAATATCAGGGCTAGAGCAATGGCTTAATAGTTAAGAGGACT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATTAAATATCAGGGCTAGAGCAATGGCTTAATAGTTAAGAGGACT  935

seq1  GGGTTCAGTTCCCAGCACCAACATGGTAACTCACAACAATCTAGAATTC  995
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTCAGTTCCCAGCACCAACATGGTAACTCACAACAATCTAGAATTC  984