BAC Information

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BAC

Clone NameB6Ng01-064G17
Chromosome3 (Build37)2 (Build37)
Map Location 41,059,167 - 41,059,73735,083,979 - 35,084,977
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-064G17.bB6Ng01-064G17.g
ACCDH884211DH884212
length914994
definitionDH884211|Mus musculus domesticus DNA, BAC clone: B6Ng01-064G17, 5' end.DH884212|Mus musculus domesticus DNA, BAC clone: B6Ng01-064G17, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,059,167 - 41,059,737)(35,083,979 - 35,084,977)
sequence
gaattctttgttcagctctgagccccatccttttaatggggttatttgat
tttctggagtccaccttcttgagttctttatatatattggatattagacc
cctatccgatttgggataggtaaagatcctttcccaatctgttggtggcc
tttttgtcttattgacggtgtcttttgctttgcagaagctttgcaatttt
atgaagtcccatttatcgattcttgatcttacagcacaagccattgctgt
tctattcaggaatttttcccctgtacccatatcttcgaggcttttcccta
ctttctcctctataagtttcagtgtctctggttttatgtggagttcctta
atccacttagatttgaccttagtacaaggagatagaaatggatcaattcg
cattcttctacatgataaccgccagttgtgccagcactatttgttgaaaa
tgctgtcttttttccactggatggttttagctcccttgtcaaagatcaag
tgaccataggtgtgtgggttcatctctgggtcttcaattctgttccattg
gtctacttgtctgtcgctataccagtaccatgcagtttttatcacaattg
ctctgtagtacagctttaggtctggcatggtgattccaccagaggttctt
ttatccttgagaagagtttttgctatcctcggttttttgtattccagatg
aatctgccgattgccctttctaattcgttgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttgatcctgccaacctaaacatgataaaagcaatctacagta
aaccaatagccaacatcaaagtaaatggtggagaagctggaagcaatccc
actaaaatcaggga
gaattcatctcgacagaagaaaggacgggatcctcccgaggggctcagca
agcaagagagaaagcaaaacccggtggctttcaaaccggctgtcatctgg
ccgtccgctcaagcagatgaagcaaaggtttgtctttcctgcgttagccg
gttctctctgacacattatcctacagtttcagaactgcaaaagccccgag
agtactaataatgctaattgccgtagataataatttaagtggtcatttac
tgagcatttactaggatctagacactgtgtgctatcacatttagtcttaa
gtcttctcagtgaggtgcgtgccagcaccaggcatacctgacaggtgctg
acacctaaggaaagagaggggcgagatctccaaggtactgctcaacggac
agtttgtttatgtgggaaaggctttcttcctctgaaaactcattagaaag
aaatgtcattttactatctcagggttttcactctttatccttactgcctc
tgaggagattttttttctatttatttgtttgtttggggttctatcccagg
tccctgcacatgctaaacacacgctcttgccctgagcccaccttagcact
cacagtgggctctgtctctcctacaaagagaggcagagaaggaagcagac
atgagaactgaagccgacagctccccttaaatgtttactttatataaaac
atttcttaaattgagaaactgctttttccctgcaaataacttttgaggta
ggtgctgttgatcgtcagctccaaagtgggccctttctccttcttacaat
gctgatacaattcactgtctgaagctgggaaggctccagacagaacggtc
ctgattctgaaagggcaaggacggctgtttacacttattagttggttggg
ttaagaagtaacttgaaaaactttggtctgttgcttttccctaaatgatt
gttttaatcaacagcagcagcatctcgtggcttgctaagtggca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059167_41059737
seq2: B6Ng01-064G17.b_46_618 (reverse)

seq1  TGGTATAGTGACAGACAAGCAGACCAATGGAATAGAATTGAAGACTCAGA  50
      |||||||| |||||||||| |||||||||||| |||||||||||| ||||
seq2  TGGTATAGCGACAGACAAGTAGACCAATGGAACAGAATTGAAGACCCAGA  50

seq1  AACGAATCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAA  100
       | ||| |||||||||||||||||||||||||| ||||||||||||||||
seq2  GATGAACCCACACACCTATGGTCACTTGATCTTTGACAAGGGAGCTAAAA  100

seq1  CCATCCAGTGGAAAAAAGACAGCATTTTCAACAAATGGTGCTGGCACAAC  150
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CCATCCAGTGGAAAAAAGACAGCATTTTCAACAAATAGTGCTGGCACAAC  150

seq1  TGGTTGTTATCATGTAGAAGAATGCGAATTGATCCACTCCTATCTCCTTG  200
      |||  ||||||||||||||||||||||||||||||| | |||||||||||
seq2  TGGCGGTTATCATGTAGAAGAATGCGAATTGATCCATTTCTATCTCCTTG  200

seq1  TACTAAGGTCAAATCTAAGTGGATCAAGGAACGCCACATAAAACCAGAGA  250
      |||||||||||||||||||||||| ||||||| |||||||||||||||||
seq2  TACTAAGGTCAAATCTAAGTGGATTAAGGAACTCCACATAAAACCAGAGA  250

seq1  CACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGTC  300
      ||||||||||||||||||||||||| ||||||||||| ||||||||||  
seq2  CACTGAAACTTATAGAGGAGAAAGTAGGGAAAAGCCTCGAAGATATGGGT  300

seq1  ACAGGGGAAAAATTCCTGCATAGAACAGCAATGGCTTGTGCTGTAAGATT  350
      |||||||||||||||||| |||||||||||||||||||||||||||||| 
seq2  ACAGGGGAAAAATTCCTGAATAGAACAGCAATGGCTTGTGCTGTAAGATC  350

seq1  GAGAATAGACAAATGGGACCTCATGAAACTGCAAAGCTTCTGCAAGGCAA  400
       ||||| || ||||||||| |||| ||| |||||||||||||||| ||||
seq2  AAGAATCGATAAATGGGACTTCATAAAATTGCAAAGCTTCTGCAAAGCAA  400

seq1  AAGACACCGTCAATAAGACAAAAAGG-CACCAACAGATTGGGAAAGGATC  449
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AAGACACCGTCAATAAGACAAAAAGGCCACCAACAGATTGGGAAAGGATC  450

seq1  TTTACCTATCCTAAATCAGATAGGGGACTAATATCCAATATATATCAAGA  499
      ||||||||||| ||||| |||||||| |||||||||||||||||| ||||
seq2  TTTACCTATCCCAAATCGGATAGGGGTCTAATATCCAATATATATAAAGA  500

seq1  ACTCAAGAAGGTGGATTCCAGAAAATCAAATAACCCCATTAAAA-AATGG  548
      ||||||||||||||| ||||||||||||||||||||||||||||  ||||
seq2  ACTCAAGAAGGTGGACTCCAGAAAATCAAATAACCCCATTAAAAGGATGG  550

seq1  GGCTCAGAGCTAAACAAAGAATT  571
      ||||||||||| |||||||||||
seq2  GGCTCAGAGCTGAACAAAGAATT  573

seq1: chr2_35083979_35084977
seq2: B6Ng01-064G17.g_71_1064 (reverse)

seq1  TGCCACTTAGCAAGCCACCGGAGATGCTGCTGCTGATGATAAAAACAAAT  50
      ||||||||||||||||||  ||||||||||||||| |||| ||||| |||
seq2  TGCCACTTAGCAAGCCAC--GAGATGCTGCTGCTGTTGATTAAAAC-AAT  47

seq1  CAATTAGAGAAAAAGCAAACAGAAACAAAAGTATTATTCAAGTTAACTTC  100
      || |||| | |||||| |||||  || ||||  || |||||||| |||||
seq2  CATTTAG-GGAAAAGC-AACAG--ACCAAAG--TTTTTCAAGTT-ACTTC  90

seq1  -TAAACCAACC-ACTTATAAGTGTAAACAGGCGTCCTTGCCCTTTCAGAA  148
       ||| |||||| ||| |||||||||||||| |||||||||||||||||||
seq2  TTAACCCAACCAACTAATAAGTGTAAACAGCCGTCCTTGCCCTTTCAGAA  140

seq1  TCAGGACCGTTCTGTCTGGAGCC-TCCCAGCTTCAGACAGTGAATTGTAT  197
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TCAGGACCGTTCTGTCTGGAGCCTTCCCAGCTTCAGACAGTGAATTGTAT  190

seq1  CAGCATTGTAAGAAGGAAGAAAGGCCCACTTTGGAGCTGACGATCAACAG  247
      |||||||||||||||||  || ||||||||||||||||||||||||||||
seq2  CAGCATTGTAAGAAGGAGAAAGGGCCCACTTTGGAGCTGACGATCAACAG  240

seq1  CACCTACCTCAAAAGTTATTTGCAGGGAAAAAGCAGTTTCTCAATTTAAG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTACCTCAAAAGTTATTTGCAGGGAAAAAGCAGTTTCTCAATTTAAG  290

seq1  AAATGTTTTATAT-AAGTAAACATTTAAGGGGAGCTGTCGGCTTCAGTTC  346
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AAATGTTTTATATAAAGTAAACATTTAAGGGGAGCTGTCGGCTTCAGTTC  340

seq1  TCATGTCTGCTTCCTTCTCTGCCTCTCTTTGTAGGAGAGACAGAG-CCAC  395
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TCATGTCTGCTTCCTTCTCTGCCTCTCTTTGTAGGAGAGACAGAGCCCAC  390

seq1  TGTGAGTGCTAAGGTGGGCTCAGGGCAAGAGCGTGTGTTTAGCATGTGCA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGTGCTAAGGTGGGCTCAGGGCAAGAGCGTGTGTTTAGCATGTGCA  440

seq1  GGGACCTGGGATAGAACCCCAAACAAACAAATAAATAGAAAAAAAATCTC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACCTGGGATAGAACCCCAAACAAACAAATAAATAGAAAAAAAATCTC  490

seq1  CTCAGAGGCAGTAAGGATAAAGAGTGAAAACCCTGAGATAGTAAAATGAC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAGGCAGTAAGGATAAAGAGTGAAAACCCTGAGATAGTAAAATGAC  540

seq1  ATTTCTTTCTAATGAGTTTTCAGAGGAAGAAAGCCTTTCCCACATAAACA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTTCTAATGAGTTTTCAGAGGAAGAAAGCCTTTCCCACATAAACA  590

seq1  AACTGTCCGTTGAGCAGTACCTTGGAGATCTCGCCCCTCTCTTTCCTTAG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTCCGTTGAGCAGTACCTTGGAGATCTCGCCCCTCTCTTTCCTTAG  640

seq1  GTGTCAGCACCTGTCAGGTATGCCTGGTGCTGGCACGCACCTCACTGAGA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCAGCACCTGTCAGGTATGCCTGGTGCTGGCACGCACCTCACTGAGA  690

seq1  AGACTTAAGACTAAATGTGATAGCACACAGTGTCTAGATCCTAGTAAATG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTAAGACTAAATGTGATAGCACACAGTGTCTAGATCCTAGTAAATG  740

seq1  CTCAGTAAATGACCACTTAAATTATTATCTACGGCAATTAGCATTATTAG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTAAATGACCACTTAAATTATTATCTACGGCAATTAGCATTATTAG  790

seq1  TACTCTCGGGGCTTTTGCAGTTCTGAAACTGTAGGATAATGTGTCAGAGA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTCGGGGCTTTTGCAGTTCTGAAACTGTAGGATAATGTGTCAGAGA  840

seq1  GAACCGGCTAACGCAGGAAAGACAAACCTTTGCTTCATCTGCTTGAGCGG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCGGCTAACGCAGGAAAGACAAACCTTTGCTTCATCTGCTTGAGCGG  890

seq1  ACGGCCAGATGACAGCCGGTTTGAAAGCCACCGGGTTTTGCTTTCTCTCT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGCCAGATGACAGCCGGTTTGAAAGCCACCGGGTTTTGCTTTCTCTCT  940

seq1  TGCTTGCTGAGCCCCTCGGGAGGATCCCGTCCTTTCTTCTGTCGAGATGA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGCTGAGCCCCTCGGGAGGATCCCGTCCTTTCTTCTGTCGAGATGA  990

seq1  ATTC  999
      ||||
seq2  ATTC  994