BAC Information

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BAC

Clone NameB6Ng01-064P17
Chromosome3 (Build37)
Map Location 70,299,800 - 70,382,555
singlet/doubletdoublet
Overlap geneLOC670542
Upstream genePpm1l, LOC667309, B3galnt1, Rpl32-ps, Nmd3, LOC100041334, 1110032A04Rik, Gm414, LOC100041384, LOC625868
Downstream geneEG625901, EG667377
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-064P17.bB6Ng01-064P17.g
ACCDH884609DH884610
length708860
definitionDH884609|Mus musculus domesticus DNA, BAC clone: B6Ng01-064P17, 5' end.DH884610|Mus musculus domesticus DNA, BAC clone: B6Ng01-064P17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,299,800 - 70,300,468)(70,381,696 - 70,382,555)
sequence
gaattcaacttatatgctggggtttgctaatttgatttactggtttatac
tgagtctgtaatttttataacacacacacacacacacacacacacacaca
caaaaccactcaaagtcaatgagcacaacatctgacttaaaaattcacca
gagaacaaatcaaagaaaatagaataaaagtataaaaagcaaataaaatt
taaagtctcttcaatacaaagactggcatatgcagaagatggctcatctg
gacttattaataaaactgaactattacatctcagttttatcaaaaagaac
aaagtcaggaatgccagacaaaccagcacatttatttaattgatatagtc
tgagatatgcttacatatgaatgtactattctgagatacacttaaatatg
aatgtactattactgtcgactagactctaacctgggaattaaggaacaat
aaaaaaatgtatgaattactgtgagaaagaacactttacacatggcctaa
ctaataatgtaatgggaagtgcttcttgtatagtttgacaccattgtgat
taaagtaaaagaaattctttggcttaattttttaaaaatattgttaaaca
tcaataggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatatgagag
agagtgtgtgtgtgtgtgtgtgtctcttgcgcgcgcgcgcgcgtgtgtgt
gtgtgtgc
gaattcaattttagataagttgtagttgtaattctggtcagaaaaactta
ttttttcagtgtcaaactgaaaaacttttctaagcaaatattgtggggtg
agtatgtgtttgtgtgcatttgtgtgtgtatgcgtgtgtgtgtgtattgg
caggctcaacagataaaagactagtgtcccctcctagtaatgagagctag
ttttaagaatctcaaaaaataaagtcaataagagtcatgatagcagctgc
tgaaatatagtagtttaggtgctatgtacctctctattcccaacagccta
aggttccttgatttaaaaaaaaaaaaaaaaaaaaaaacaaaaaatcaaac
aaacaaaaaaaaaaacacttggagtacaaattacacctatatttagattt
cattatctactgaaaagaagcaatatgaattttacctttctatgtatgga
gcaagtctaaattcaatctaatcccttattagagaaggagaattagagag
tgatagagaggaataatacaaaggagtaatataaaaataagccctgctct
acacatttatctgtgtcagatgctttggttgttttgaatagagaaggggg
agtgctgctctccaagatcttcagggcacgaatggactcagtaacattcc
atttgagcaggatctaaacatgacatattgattagaatttattgatcaga
caggaaatgcacagagtgaatgatacagggaagtagcatgtagttttccg
catgtaaccagtcaccttatgtccactaaattggactgtgcctcccttcc
aagtggcaagagtaactcctcagaatatatggaggaaatcaaatctaagt
agtgatagta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_70299800_70300468
seq2: B6Ng01-064P17.b_48_755

seq1  GAATTCAACTTATATGCTGGGGTTTGCTAATTTGATTTACTGGTTTATAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACTTATATGCTGGGGTTTGCTAATTTGATTTACTGGTTTATAC  50

seq1  TGAGTCTGTAATTTTTATAACACACACACACACACACACACACACACACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCTGTAATTTTTATAACACACACACACACACACACACACACACACA  100

seq1  CAAAACCACTCAAAGTCAATGAGCACAACATCTGACTTAAAAATTCACCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACCACTCAAAGTCAATGAGCACAACATCTGACTTAAAAATTCACCA  150

seq1  GAGAACAAATCAAAGAAAATAGAATAAAAGTATAAAAAGCAAATAAAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACAAATCAAAGAAAATAGAATAAAAGTATAAAAAGCAAATAAAATT  200

seq1  TAAAGTCTCTTCAATACAAAGACTGGCATATGCAGAAGATGGCTCATCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTCTCTTCAATACAAAGACTGGCATATGCAGAAGATGGCTCATCTG  250

seq1  GACTTATTAATAAAACTGAACTATTACATCTCAGTTTTATCAAAAAGAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTATTAATAAAACTGAACTATTACATCTCAGTTTTATCAAAAAGAAC  300

seq1  AAAGTCAGGAATGCCAGACAAACCAGCACATTTATTTAATTGATATAGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCAGGAATGCCAGACAAACCAGCACATTTATTTAATTGATATAGTC  350

seq1  TGAGATATGCTTACATATGAATGTACTATTCTGAGATACACTTAAATATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATATGCTTACATATGAATGTACTATTCTGAGATACACTTAAATATG  400

seq1  AATGTACTATTACTGTCGACTAGACTCTAACCTGGGAATTAAGGAACAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTACTATTACTGTCGACTAGACTCTAACCTGGGAATTAAGGAACAAT  450

seq1  AAAAAAATGTATGAATTACTGTGAGAAAGAACACTTTACACATGGCCTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAATGTATGAATTACTGTGAGAAAGAACACTTTACACATGGCCTAA  500

seq1  CTAATAATGTAATGGGAAGTGCTTCTTGTATAGTTTGACACCATTGTGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATAATGTAATGGGAAGTGCTTCTTGTATAGTTTGACACCATTGTGAT  550

seq1  TAAAGTAAAAGAAATTCTTTGGCTTAATTTTTTAAAAATATTGTTAAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTAAAAGAAATTCTTTGGCTTAATTTTTTAAAAATATTGTTAAACA  600

seq1  TCAATAGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  650
      ||||||||||||||||||||||||||||||||||||||||| | || | |
seq2  TCAATAGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATATGAGAG  650

seq1  TGTTTATGTGTGTGTGTGC-------------------------------  669
       |  | ||||||||||||                                
seq2  AGAGTGTGTGTGTGTGTGTGTGTCTCTTGCGCGCGCGCGCGCGTGTGTGT  700

seq1  --------  669
              
seq2  GTGTGTGC  708

seq1: chr3_70381696_70382555
seq2: B6Ng01-064P17.g_69_928 (reverse)

seq1  TACTATCACTACTTA-ATTTAATTTTCCTCCATAT-TTCTGAGGAGTTAC  48
      ||||||||||||||| |||| | |||||||||||| ||||||||||||||
seq2  TACTATCACTACTTAGATTTGA-TTTCCTCCATATATTCTGAGGAGTTAC  49

seq1  TCTTGCCACTTGGAAGGGAGGCACAGTCCAATTTAGTGGACATAAGGTGA  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCCACTTGGAAGGGAGGCACAGTCCAATTTAGTGGACATAAGGTGA  99

seq1  CTGGTTACATGCGGAAAACTACATTGCTACTT-CCTGTATCATTCACTCT  147
      ||||||||||||||||||||||| |||||||| |||||||||||||||||
seq2  CTGGTTACATGCGGAAAACTACA-TGCTACTTCCCTGTATCATTCACTCT  148

seq1  GTGCATTTCCTGTTCTGATCAATAAATTCTAATCAATATGTCATGTTTAG  197
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GTGCATTTCCTG-TCTGATCAATAAATTCTAATCAATATGTCATGTTTAG  197

seq1  ATCCTGCTCAAATGGAATGTTACTGAGTCCATTCGTGCCCTGAAGATCTT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGCTCAAATGGAATGTTACTGAGTCCATTCGTGCCCTGAAGATCTT  247

seq1  GGAGAGCAGCACTCCCCCTTCTCTATTCAAAACAACCAAAGCATCTGACA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGCAGCACTCCCCCTTCTCTATTCAAAACAACCAAAGCATCTGACA  297

seq1  CAGATAAATGTGTAGAGCAGGGCTTATTTTTATATTACTCCTTTGTATTA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATAAATGTGTAGAGCAGGGCTTATTTTTATATTACTCCTTTGTATTA  347

seq1  TTCCTCTCTATCACTCTCTAATTCTCCTTCTCTAATAAGGGATTAGATTG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCTCTATCACTCTCTAATTCTCCTTCTCTAATAAGGGATTAGATTG  397

seq1  AATTTAGACTTGCTCCATACATAGAAAGGTAAAATTCATATTGCTTCTTT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAGACTTGCTCCATACATAGAAAGGTAAAATTCATATTGCTTCTTT  447

seq1  TCAGTAGATAATGAAATCTAAATATAGGTGTAATTTGTACTCCAAGTGTT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTAGATAATGAAATCTAAATATAGGTGTAATTTGTACTCCAAGTGTT  497

seq1  TTTTTTTTTGTTTGTTTGATTTTTTGTTTTTTTTTTTTTTTTTTTTTTTA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTGTTTGTTTGATTTTTTGTTTTTTTTTTTTTTTTTTTTTTTA  547

seq1  AATCAAGGAACCTTAGGCTGTTGGGAATAGAGAGGTACATAGCACCTAAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAGGAACCTTAGGCTGTTGGGAATAGAGAGGTACATAGCACCTAAA  597

seq1  CTACTATATTTCAGCAGCTGCTATCATGACTCTTATTGACTTTATTTTTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTATATTTCAGCAGCTGCTATCATGACTCTTATTGACTTTATTTTTT  647

seq1  GAGATTCTTAAAACTAGCTCTCATTACTAGGAGGGGACACTAGTCTTTTA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTCTTAAAACTAGCTCTCATTACTAGGAGGGGACACTAGTCTTTTA  697

seq1  TCTGTTGAGCCTGCCAATACACACACACACGCATACACACACAAATGCAC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTGAGCCTGCCAATACACACACACACGCATACACACACAAATGCAC  747

seq1  ACAAACACATACTCACCCCACAATATTTGCTTAGAAAAGTTTTTCAGTTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACACATACTCACCCCACAATATTTGCTTAGAAAAGTTTTTCAGTTT  797

seq1  GACACTGAAAAAATAAGTTTTTCTGACCAGAATTACAACTACAACTTATC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTGAAAAAATAAGTTTTTCTGACCAGAATTACAACTACAACTTATC  847

seq1  TAAAATTGAATTC  860
      |||||||||||||
seq2  TAAAATTGAATTC  860