BAC Information

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BAC

Clone NameB6Ng01-066O24
Chromosome3 (Build37)6 (Build37)
Map Location 41,059,192 - 41,059,73718,836,021 - 18,836,192
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-066O24.bB6Ng01-066O24.g
ACCDH885975DH885976
length953920
definitionDH885975|Mus musculus domesticus DNA, BAC clone: B6Ng01-066O24, 5' end.DH885976|Mus musculus domesticus DNA, BAC clone: B6Ng01-066O24, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,059,192 - 41,059,737)(18,836,021 - 18,836,192)
sequence
gaattctttgtttagcactgagccccattttttaatggggttatttgatt
ttctggagtccaccttcttgagttctttatatatattggagagtaatccc
ctatctgatttaggataggcaaagatcctttcccaatctgttggttgtct
ttttgtcttattgacagtgtcttttgccttacagaagctttgcaatttta
tggagtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctattcaggaattttcccctgtgcccttatcttcaagtcttttcctcact
ttctcttctataagtttcactgtttctggttttatgtgcacttctttaat
ccacttagatttgaccttagtaacaggagataggaatggatcaattcaca
ttcttctacatgataacctccagttgtgccagcaccatttgttgaaaatg
ctctctttttttccactggattgttttagctcccttgtcaaagatcaagt
gaccataggtgtgtgggttcatctctgggtcttcaattctatttcattgg
tctacttgtctgtcacgatacaagtaccatgcagtttttaccacaattgc
tctgtagtaaagctttaggtcaggcatggtgattccaccagaggttcttt
tatccttgagaagagtttttgctatcctaggttttttgttattccagatg
aatttgcaaattgctccttctaattcgttgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttactatattgatcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttctttaatttctttcttcagagacttgaagttcttatcata
cagatctttcacttccttagttagagtcatgccaaggtattttatattat
ttg
gaattccagagtggttgtacaagcctgcaatcccaccaacaatggaggag
tgttcctctttctccacatctatgccagcatctgctgtcacctgaatttt
tgatcttagccattctgactggtgtgaggtggaatctcagggttgttttg
atttgcatttccctgatgattaagggtgagcaattgtgataaaaactgca
tggtactggtatagagacagacaagtagaccaatggaatagaattgaaga
cccagaaatgaacccacacacctatggtcacttgatcttcgacaagggag
ctaaaaccatccagtggaagaaagacagcattttcaacaattggtgttgg
cacaactggttgttatcatgtagaagaatgcgaatcaatccatacttatc
tccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaac
cagagacactgaaacttatagaggagaaagtggggaaaagccttgaagat
atgggcacaggggaaaaattcctgaacagaacagcaatggcttgtgctgt
aagatcgagaattgacaaatgggacctaatgaaactccaaagtttctgca
aggcaaaagacactgtcaataagacaaaaagaccaccaacagattgggaa
aggatctttacctatcctaaatcagataggggactaatatccaacatata
taaagaactcaagaaggtggacttcagaaaatcaaataaccccattaaaa
aatggggctcagaactgaacaaagaattctcacctgaggaataccgaatg
gcagagaagcacctgaaaaaatgttcaacatccttaatcatcagggaaat
gtccttcatttttatgactgtagtgttctgcctgagtgtatgttggtgta
ccactggaactatggggact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059192_41059737
seq2: B6Ng01-066O24.b_46_592 (reverse)

seq1  AATGGAATAGAATTGAAGACTCAGAAACGAATCCACACACCTATGGTCAC  50
      |||| ||||||||||||||| |||| | ||| ||||||||||||||||||
seq2  AATGAAATAGAATTGAAGACCCAGAGATGAACCCACACACCTATGGTCAC  50

seq1  TTGATCTTCGACAAGGGAGCTAAAACCATCCAGTGG-AAAAAAGACAGCA  99
      |||||||| ||||||||||||||||| ||||||||| |||||||| ||||
seq2  TTGATCTTTGACAAGGGAGCTAAAACAATCCAGTGGAAAAAAAGAGAGCA  100

seq1  TTTTCAACAAATGGTGCTGGCACAACTGGTTGTTATCATGTAGAAGAATG  149
      |||||||||||||||||||||||||||||  |||||||||||||||||||
seq2  TTTTCAACAAATGGTGCTGGCACAACTGGAGGTTATCATGTAGAAGAATG  150

seq1  CGAATTGATCCACTCCTATCTCCTTGTACTAAGGTCAAATCTAAGTGGAT  199
       ||||||||||| |||||||||||  ||||||||||||||||||||||||
seq2  TGAATTGATCCATTCCTATCTCCTGTTACTAAGGTCAAATCTAAGTGGAT  200

seq1  CAAGGAACGCCACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAG  249
       || |||   |||||||||||||| ||| ||||||||||||| |||||||
seq2  TAAAGAAGTGCACATAAAACCAGAAACAGTGAAACTTATAGAAGAGAAAG  250

seq1  TGGGGAAAAGCCTTGAAGATATGGTCACAGGGGAAAAATTCCTGCATAGA  299
      || ||||||| |||||||||| || |||||||| |||||||||| |||||
seq2  TGAGGAAAAGACTTGAAGATAAGGGCACAGGGG-AAAATTCCTGAATAGA  299

seq1  ACAGCAATGGCTTGTGCTGTAAGATTGAGAATAGACAAATGGGACCTCAT  349
      ||||||||||||||||||||||||| |||||| ||||||||||||  |||
seq2  ACAGCAATGGCTTGTGCTGTAAGATCGAGAATTGACAAATGGGACTCCAT  349

seq1  GAAACTGCAAAGCTTCTGCAAGGCAAAAGACACCGTCAATAAGACAAAAA  399
       ||| ||||||||||||| |||||||||||||| ||||||||||||||||
seq2  AAAATTGCAAAGCTTCTGTAAGGCAAAAGACACTGTCAATAAGACAAAAA  399

seq1  GGC-ACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGG  448
      | | ||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GACAACCAACAGATTGGGAAAGGATCTTTGCCTATCCTAAATCAGATAGG  449

seq1  GGACTAATATCCAATATATATCAAGAACTCAAGAAGGTGGATTCCAGAAA  498
      ||| || | |||||||||||| ||||||||||||||||||| ||||||||
seq2  GGATTACTCTCCAATATATATAAAGAACTCAAGAAGGTGGACTCCAGAAA  499

seq1  ATCAAATAACCCCATTAAAAAATGGGGCTCAGAGCTAAACAAAGAATT  546
      |||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ATCAAATAACCCCATTAAAAAATGGGGCTCAGTGCTAAACAAAGAATT  547

seq1: chr6_18836021_18836192
seq2: B6Ng01-066O24.g_70_241 (reverse)

seq1  CCTTAATCATCAGGGAAATGGAAATCAAAACAACCCTGAGATTCCACCTC  50
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCACCTC  50

seq1  ACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTG  100

seq1  GCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTGCA  150
      || | |||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTGCA  150

seq1  GGCTTGTACAACCACTCTGGAA  172
      ||||||||||||||||||||||
seq2  GGCTTGTACAACCACTCTGGAA  172