BAC Information

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BAC

Clone NameB6Ng01-069F12
Chromosome3 (Build37)
Map Location 146,812,846 - 146,950,183
singlet/doubletdoublet
Overlap genePpia-ps3_1528.1
Upstream geneMcoln2, Edg7, Ssx2ip, Ctbs, Spata1, Gng5, Bxdc5, LOC100040473, Dnase2b, Uox, 4930503B20Rik, Gm1652, LOC670100, Prkacb, LOC100040540, Ttll7
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-069F12.bB6Ng01-069F12.g
ACCDH887683DH887684
length1,155917
definitionDH887683|Mus musculus domesticus DNA, BAC clone: B6Ng01-069F12, 5' end.DH887684|Mus musculus domesticus DNA, BAC clone: B6Ng01-069F12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(146,812,846 - 146,813,629)(146,949,268 - 146,950,183)
sequence
gaattctcacctgaggaataccgaatggctgagaaacacctgaaaaaatg
ttcagcatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccatctcacaccagtcagaatggctaagaacaaaaattcaggtgacagc
agatgctggccaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactactggaggatctcgcaatacctctcctgggc
atatatccagaagatgttccaactagtaagaaagacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaacaacccagat
gcccctcaacagaggaatggatacaaaaaatgtggtccatttatacaatg
gagtactactcagctattaaaaagaatgaacttatgaaattcctaggcaa
atggttggacctggagggcaccatcctgagtgaggtaacccaatcacaaa
agaactcaaatgatatgtactcactgataagtggatattagcccagaaac
ttagaatacccaagatataagttacaatttgcaaaacacatgaaactgaa
gaagaacgaagaccaaagtgtggacactttgccccttcttagaattggga
acaaaacacctatggaaggagttacagagacaaagttaggagctgagaca
aaaggatggaccatctagagactgccatatccaggtatccatcccataat
cagcctccaaacgctgacaccattgcatacactagcaagattttgctgaa
aggaccctgatatagctgtctcttgtgagactatgccggggcctccatct
atatcaagttctcagatttttcttctttcactagcatagtatctgtaggt
acctactacagcatgggattttctgccacaaaatgaccagaagttcattg
acccgaagttcagagattagaagcacattccttgttattcttccttagct
cagaaacatagatacccagatatagttacattgcaaaccatgaaactcag
aagatgagaccaaagtgtggacacttgccctcttagattgggaacaaccc
atgga
gaattcctttcctttgtttaggatctccttgaacttgacagctgaatgct
tgcccggtctggacgtgttctgctaagcctgtgggaagtgaacctgttcc
tatctgtccccattgccagctaagctcggcttctagaaacttattctgca
ataggaggccatcgtagggttcttctgccttctggccctccaccaggctg
agcagacaggtcctaataccaacctctgccattttgtaatctcccttgaa
gaactatgtcaagacaagccagactccttctctgaatgccccattgatac
actatactttcttcttctggaaaactcttaagggcaggaactgtccccag
ggcatttggtgctgtatgtggtcagttagcacagaatgtggtgtagtgta
aaccaagcatcaggtttcaaaagacaccataaaaatggaagtttgggtgg
tctaaacaaaatcaatttattttcccttagtcctgaattctcaaagtcta
aaaccaaggtcctacagggttgctttttgatatggcctttctgtatggct
tgttcttgtaatgccctcagctctggctgggcacgggagcagattggggg
aggggcgctcacgcgcatctctttctgttgtgttgctgattcatatcagg
cttgcaatgcatgcttgtatattgagagattaagaataagtgcttttctt
tttcccaggtcctttttgattccttacagaagaatgagacatggattttt
tttttccccagtatccatcaggaagtctggtaactaatatctgttcaaca
catacttgctgggttgagttcaaccttaaaattgaagatgttctatgaga
atggagtcacatgtaactgtgtacacatgtgggagttttgtctatttatg
tgtgtgggtgagggtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_146812846_146813629
seq2: B6Ng01-069F12.b_442_1201

seq1  CAGATGCCCCTCAACAGAGGAATGGATACAAAAAATGTGGTCCATTTATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGCCCCTCAACAGAGGAATGGATACAAAAAATGTGGTCCATTTATA  50

seq1  CAATGGAGTACTACTCAGCTATTAAAAAGAATGAACTTATGAAATTCCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGAGTACTACTCAGCTATTAAAAAGAATGAACTTATGAAATTCCTA  100

seq1  GGCAAATGGTTGGACCTGGAGGGCACCATCCTGAGTGAGGTAACCCAATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAATGGTTGGACCTGGAGGGCACCATCCTGAGTGAGGTAACCCAATC  150

seq1  ACAAAAGAACTCAAATGATATGTACTCACTGATAAGTGGATATTAGCCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAGAACTCAAATGATATGTACTCACTGATAAGTGGATATTAGCCCA  200

seq1  GAAACTTAGAATACCCAAGATATAAGTTACAATTTGCAAAACACATGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTTAGAATACCCAAGATATAAGTTACAATTTGCAAAACACATGAAA  250

seq1  CTGAAGAAGAACGAAGACCAAAGTGTGGACACTTTGCCCCTTCTTAGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGAAGAACGAAGACCAAAGTGTGGACACTTTGCCCCTTCTTAGAAT  300

seq1  TGGGAACAAAACACCTATGGAAGGAGTTACAGAGACAAAGTTAGGAGCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAACAAAACACCTATGGAAGGAGTTACAGAGACAAAGTTAGGAGCTG  350

seq1  AGACAAAAGGATGGACCATCTAGAGACTGCCATATCCAGGTATCCATCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAAAGGATGGACCATCTAGAGACTGCCATATCCAGGTATCCATCCC  400

seq1  ATAATCAGCCTCCAAACGCTGACACCATTGCATACACTAGCAAGATTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCAGCCTCCAAACGCTGACACCATTGCATACACTAGCAAGATTTTG  450

seq1  CTGAAAGGACCCTGATATAGCTGTCTCTTGTGAGACTATGCCGGGGCCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAGGACCCTGATATAGCTGTCTCTTGTGAGACTATGCCGGGGCCTC  500

seq1  CATCTATATCAAGTTCTCAGATTTTTCTTCTTTCACTAGCATAGTATCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTATATCAAGTTCTCAGATTTTTCTTCTTTCACTAGCATAGTATCTG  550

seq1  TAGGTACCTACTACAGCATGGGATTTTCTGCCACAAAATGACCAAGAAGT  600
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TAGGTACCTACTACAGCATGGGATTTTCTGCCACAAAATGACC-AGAAGT  599

seq1  TCATTGACCCGAAGTTCAAGAAGATTAGAAGGCACATTCCTTGTTTATTC  650
      ||||||||||||||||||   ||||||||| |||||||||||| ||||| 
seq2  TCATTGACCCGAAGTTCA--GAGATTAGAA-GCACATTCCTTG-TTATT-  644

seq1  CTTCCTTAGCTCAGAAACATAGAATACCCAAGATATAAGTTACAATTTGC  700
      |||||||||||||||||||||| |||||| |||||| |||||||  ||||
seq2  CTTCCTTAGCTCAGAAACATAG-ATACCC-AGATAT-AGTTACA--TTGC  689

seq1  AAAACACATGAAACTCAAGAAGAATGAAGACCAAAGTGTGGACACTTTGC  750
      |||   |||||||||| ||||| ||| |||||||||||||||||| ||||
seq2  AAA--CCATGAAACTC-AGAAG-ATG-AGACCAAAGTGTGGACAC-TTGC  733

seq1  CCCTTCTTAGAATTGGGAACAAAACACCCATGGA  784
      ||  |||||| ||||||||||    |||||||||
seq2  CC--TCTTAG-ATTGGGAACA----ACCCATGGA  760

seq1: chr3_146949268_146950183
seq2: B6Ng01-069F12.g_70_986 (reverse)

seq1  ACACCCTCACCCACACACATAAATAGACAAAACTCCCACATGTGTACACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCTCACCCACACACATAAATAGACAAAACTCCCACATGTGTACACA  50

seq1  GTTACATGTGACTCCATTCTCATAGAACATCTTCAATTTTAAGGTTGAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACATGTGACTCCATTCTCATAGAACATCTTCAATTTTAAGGTTGAAC  100

seq1  TCAACCCAGCAAGTATGTGTTGAACAGATATTAGTTACCAGACTTCCTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACCCAGCAAGTATGTGTTGAACAGATATTAGTTACCAGACTTCCTGA  150

seq1  TGGATACTGGGGAAAAAAAAAATCCATGTCTCATTCTTCTGTAAGGAATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATACTGGGGAAAAAAAAAATCCATGTCTCATTCTTCTGTAAGGAATC  200

seq1  AAAAAGGACCTGGGAAAAAG-AAAGCACTTATTCTTAATCTCTCAATATA  249
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AAAAAGGACCTGGGAAAAAGAAAAGCACTTATTCTTAATCTCTCAATATA  250

seq1  CAAGCATGCATTGCAAGCCTGATATGAATCAGCAACACAACAGAAAGAGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCATGCATTGCAAGCCTGATATGAATCAGCAACACAACAGAAAGAGA  300

seq1  TGCGCGTGAGCGCCCCTCCCCCAATCTGCTCCCGTGCCCAGCCAGAGCTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGCGTGAGCGCCCCTCCCCCAATCTGCTCCCGTGCCCAGCCAGAGCTG  350

seq1  AGGGCATTACAAGAACAAGCCATACAGAAAGGCCATATCAAAAAGCAACC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCATTACAAGAACAAGCCATACAGAAAGGCCATATCAAAAAGCAACC  400

seq1  CTGTAGGACCTTGGTTTTAGACTTTGAGAATTCAGGACTAAGGGAAAATA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGGACCTTGGTTTTAGACTTTGAGAATTCAGGACTAAGGGAAAATA  450

seq1  AATTGATTTTGTTTAGACCACCCAAACTTCCATTTTTATGGTGTCTTTTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGATTTTGTTTAGACCACCCAAACTTCCATTTTTATGGTGTCTTTTG  500

seq1  AAACCTGATGCTTGGTTTACACTACACCACATTCTGTGCTAACTGACCAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTGATGCTTGGTTTACACTACACCACATTCTGTGCTAACTGACCAC  550

seq1  ATACAGCACCAAATGCCCTGGGGACAGTTCCTGCCCTTAAGAGTTTTCCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGCACCAAATGCCCTGGGGACAGTTCCTGCCCTTAAGAGTTTTCCA  600

seq1  GAAGAAGAAAGTATAGTGTATCAATGGGGCATTCAGAGAAGGAGTCTGGC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAGAAAGTATAGTGTATCAATGGGGCATTCAGAGAAGGAGTCTGGC  650

seq1  TTGTCTTGACATAGTTCTTCAAGGGAGATTACAAAATGGCAGAGGTTGGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTTGACATAGTTCTTCAAGGGAGATTACAAAATGGCAGAGGTTGGT  700

seq1  ATTAGGACCTGTCTGCTCAGCCTGGTGGAGGGCCAGAAGGCAGAAGAACC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGGACCTGTCTGCTCAGCCTGGTGGAGGGCCAGAAGGCAGAAGAACC  750

seq1  CTACGATGGCCTCCTATTGCAGAATAAGTTTCTAGAAGCCGAGCTTAGCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACGATGGCCTCCTATTGCAGAATAAGTTTCTAGAAGCCGAGCTTAGCT  800

seq1  GGCAATGGGGACAGATAGGAACAGGTTCACTTCCCACAGGCTTAGCAGAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAATGGGGACAGATAGGAACAGGTTCACTTCCCACAGGCTTAGCAGAA  850

seq1  CACGTCCAGACCGGGCAAGCATTCAGCTGTCAAGTTCAAGGAGATCCTAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTCCAGACCGGGCAAGCATTCAGCTGTCAAGTTCAAGGAGATCCTAA  900

seq1  ACAAAGGAAAGGAATTC  916
      |||||||||||||||||
seq2  ACAAAGGAAAGGAATTC  917