MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	B6Ng01-074D15
Chromosome	3 (Build37)
Map Location	3,191,520 - 3,311,198
singlet/doublet	doublet
Overlap gene	LOC667655
Upstream gene	none
Downstream gene	LOC100039140, Hnf4g, EG383815, LOC100039157, LOC100039167, LOC667709
Link	Open Mouse BAC browser

Click to get alignment info.

name	LOC667655 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:667655
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein pseudo : _no_value

name	LOC100039140 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039140
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein pseudo : _no_value

name	Hnf4g (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:30942 MGI:1353604
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG383815 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:383815 MGI:3649025
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 72 ESTs, 7 Proteins

name	LOC100039157 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039157
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins pseudo : _no_value

name	LOC100039167 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039167
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins pseudo : _no_value

name	LOC667709 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:667709
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 255 ESTs, 11 Proteins pseudo : _no_value

name	Hnf4g (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:7305146 GeneID:30942 MGI:1353604
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : hepatocyte nuclear factor 4, gamma transcript_id : NM_013920.1

name	EG383815 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94369198 GeneID:383815 MGI:3649025
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 72 ESTs, 7 Proteins product : predicted gene, EG383815 transcript_id : XM_357274.5

name	Hnf4g (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7305147 CCDS:CCDS17226.1 GeneID:30942 MGI:1353604
definition	GO_component : GO:0005634 - nucleus [Evidence IEA]; GO:0005667 - transcription factor complex [Evidence ISS] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0004879 - ligand-dependent nuclear receptor activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0005496 - steroid binding [Evidence IEA]; GO:0003707 - steroid hormone receptor activity [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA]; GO:0016563 - transcriptional activator activity [Evidence IDA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA]; GO:0006366 - transcription from RNA polymerase II promoter [Evidence IDA] codon_start : 1 function : transcription factor product : hepatocyte nuclear factor 4, gamma protein_id : NP_038948.1

name	EG383815 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:38076180 GeneID:383815 MGI:3649025
definition	codon_start : 1 product : hypothetical protein protein_id : XP_357274.1

name	LOC667655 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:667655
definition	number : 2 pseudo : _no_value

name	LOC667655 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:667655
definition	number : 1 pseudo : _no_value

name	LOC100039140 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039140
definition	number : 1 pseudo : _no_value

name	LOC100039140 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039140
definition	number : 2 pseudo : _no_value

name	LOC100039157 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039157
definition	number : 1 pseudo : _no_value

name	LOC100039167 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039167
definition	number : 1 pseudo : _no_value

name	LOC667709 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149250609 GeneID:667709
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 255 ESTs, 11 Proteins product : similar to Murine homolog of human ftp-3 pseudo : _no_value transcript_id : XR_032506.1

clone name	MSMg01-213F13
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-305E04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-055G15
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-277I22
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-344E10
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-478H08
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-237C18
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-467J24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-383I05
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-180O08
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-526G10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-078P08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-353J23
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-209H13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-445F03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-405O08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-432N14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-327M07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-218C04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-107M10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-117N20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-380E16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-364P23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-437I24
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-319E19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-435H09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-174O06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-120C12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-262M16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-448A06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-498B22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-152K14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-357I03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-511P16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-426L06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-051J21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-424O10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-443E04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-386P07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-411B21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-356D10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-279J05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-427K07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-106H08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-152L03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-199K18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-349C17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-254E04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-074D15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-208K03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-003H10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-003H11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-009K02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-130N12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-148G16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-105I06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-293J18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-263G10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-245H05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-209N22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-191P14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-172H09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-296J03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-095H15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-192J16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-159O21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-030C07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-326D13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-019J14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-135O20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-205K07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-156B07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-230K15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-037A17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-276D18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-108K07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-084K19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-339E10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-321L13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-047L16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-233B17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-124D06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-056D01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-308J05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-147N19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-342B20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-308J01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-218P24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-023G24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-192F08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-202M01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-125H17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-040O21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-127L21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-060E04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-047G02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-028F23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-199C24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-077M06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-133D10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-089N15
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	B6Ng01-074D15.b	B6Ng01-074D15.g
ACC	DH891136	DH891137
length	389	1,134
definition	DH891136\|Mus musculus domesticus DNA, BAC clone: B6Ng01-074D15, 5' end.	DH891137\|Mus musculus domesticus DNA, BAC clone: B6Ng01-074D15, 3' end.
singlet/doublet	doublet	doublet
BLAST hit	unique	unique
Map location.	(3,310,804 - 3,311,198)	(3,191,520 - 3,192,234)
sequence	tttaaggatgtgacaaaatatgacgtttatttggcatcttagacagccac agcttttacacaaaacttttgagttttaaaagtggattttctgtgcttcc tatttaaagcaaaattagtgtgcttctaagaagacaaacttgtttcttac tcaacaaaacacattatcaccatcttgtggtgaaagtggcacagggcagg atgaattcacctttagtctgctcagtgagctgagaaatcactgacttctt gagacatcaatatcctatcaaaatcctgagtttctgaaatatcttccccc aagtcaatattgctaacagatatttctttgtagtagtggatgtctgtgag ggaaagatgaagggtgtttgtttgtttgtttgtttgttt	gaattcagaaatctgcctgcctctgcctccctagtgatgggactaaaggt gtgcaccaccatcggcctgcataaaatactatttttttattgaggtatta aaagctgcactgtaatgcactcatatataagaactggcaggctaacttcg taacgtgaaagtggtgattttggtattgattttaaagagaaaagattgtt taaaatcagggtttgctttccaaaagttatggaaatattctaatattaca aaagaaacttaaaaataacgattcaaattgccagtgtttcattgactgca gtttgcagtttgattgcaaggtcaggttttaaattcacccatatattata attagaatgattacaagactttatcttataagaacactaatgcagctccc tgaaaccatcgagccatacaaagcaaagacagactgatctggatatattc atttgtgtagaaattggaccctcatacaatcagtttggctatggttgctt cctcgcaggggactacagtacaaccaatgcttccagcactaaggttataa ggaatgttttaattataaatcttcttaagaaagactgtccaaaaattaga ggcatagacagacagtcgaattgttcctctggaatctgtcctcacagcag aagagatagtctttgggccaggactctggcagtatgctcagattgaaaca tatttacatttgagttaatgcaaatctcagagcagcctcagcaaggcttt gtgtggagtttcttttgtttcagcaatccctgcctagggaagtttttggg acttcacctccttgcctccctggaactatttttatttcaaaacaacattt attacagatctatctaggtgttgctcaaaataaagtttaaacttaagata tatgaaatgtcaatgactaatctctgagggatccgggaaccagatgttga aactcaagaagacaaacaccaaagtgtggacatgttgcccctttcttaga ttgggacataaccaccatggaagagttacggagaccaagtttggggctga gacaaaaggatgggtcatgtagagactgcccatacttggggatcatctca taattctgcctctcaaacactgaacacattgcat
quality values	Open. Hide. 59 61 61 59 59 59 61 38 24 44 43 61 61 61 49 59 61 59 61 59 49 11 13 27 10 23 33 49 24 27 27 55 55 59 61 61 61 61 61 61 61 52 61 61 59 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 52 59 41 28 32 27 28 29 59 59 55 59 59 59 59 61 61 61 61 59 61 59 61 61 61 61 61 61 61 59 59 61 61 59 59 55 59 61 55 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 59 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 59 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 61 61 61 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 61 61 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 55 55 55 61 61 61 55 61 61 61 61 61 61 61 61 61 61 61 61 61 55 61 55 44 55 61 61 61 61 61 61 61 61 61 55 61 61 55 55 26	Open. Hide. 61 61 55 49 61 49 49 14 20 12 12 18 13 18 7 43 43 43 61 59 61 61 61 61 61 61 59 59 61 61 61 61 61 61 59 59 59 59 61 61 61 59 59 61 59 61 61 61 61 59 59 59 49 49 37 30 30 28 36 59 59 61 61 59 61 61 61 61 61 61 61 61 61 59 55 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 61 61 59 59 61 59 59 61 61 61 61 61 61 59 61 61 61 61 59 61 61 61 61 59 59 59 61 59 59 61 61 61 61 61 61 61 61 61 61 61 59 61 61 61 61 61 61 61 61 61 61 59 61 59 59 61 61 61 61 61 61 61 61 61 61 61 61 59 55 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 55 61 61 61 61 61 59 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 59 61 61 61 61 61 61 61 61 61 59 59 61 59 61 61 61 61 61 61 59 59 61 61 59 61 59 61 61 61 61 59 61 61 61 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 61 61 61 61 61 59 61 61 61 61 61 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 55 61 61 61 55 61 61 61 61 61 61 61 61 61 61 61 55 61 61 61 61 61 61 61 61 55 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 47 61 61 61 61 61 61 61 61 61 61 61 61 55 61 61 61 61 61 61 61 61 61 61 61 50 50 61 53 53 61 53 61 47 61 50 52 47 61 61 61 61 53 47 43 50 50 61 61 61 61 61 53 53 53 61 53 61 61 39 61 47 61 61 61 50 53 53 61 50 61 61 61 61 61 48 61 61 43 61 61 61 61 61 61 53 53 47 61 61 61 61 61 39 61 61 61 45 61 61 61 50 47 39 61 61 39 52 52 43 47 50 50 53 52 47 52 45 53 38 47 42 47 53 53 50 42 53 52 53 53 53 52 57 57 53 27 57 43 39 57 53 53 47 53 57 53 52 50 53 47 47 47 39 53 40 47 50 57 57 53 53 42 42 52 47 52 52 25 57 47 26 57 32 30 38 53 50 28 52 53 57 53 57 53 47 28 39 38 52 38 52 30 53 53 53 53 57 43 53 53 36 30 41 53 50 53 45 40 34 52 52 53 53 45 57 38 50 40 50 33 37 46 29 35 46 26 52 41 57 50 32 27 33 15 10 30 36 53 45 38 53 45 47 53 53 40 45 29 52 27 50 45 18 45 50 43 39 40 30 35 25 23 50 52 19 20 53 9 28 35 53 33 31 44 40 27 38 53 40 40 43 52 39 53 23 5 57 12 27 20 21 30 41 10 22 34 39 31 33 42 27 34 14 14 27 46 35 34 37 14 14 57 57 47 12 22 46 16 33 28 29 37 39 14 25 52 37 36 57 40 35 35 31 33 17 23 37 45 33 39 22 29 29 26 33 29 39 57 57 57 24 24 12 57 57 34 31 53 57 35 31 14 40 25 14 34 46 14 29 19 46 28 35 23 29 17 15 30 29 29 37 29 29 29 12 51 28 48 40 18 32 24 34 34 21 47 47 44 26 14 32 19 13 23 51 28 46 46 20 29 29 29 29 33 9 29 11 29 28 27 23 17 46 36 28 29 29 28 29 24 30 25 28 29 28 24 30 14 23 35 33 29 22 23 29 21 39 23 24 19 11 43 28 43 20 24 9 13 7 18 6 16 7 17 14 43 15 31 39 17 28 35 31 21 26 26 26 24 14 17 8 9 28 25 20 10 26 24 21 27 25 8 10 5 6 4 7 11 17 23 31 28 21 43 28 30 51 51 33 21 46 29 26 23 34 28 14 46 29 21 36 24 21 24 17 11 12 18 32 12 5 5 31 36 10 13 17 23 12 14 12 25 9 25 15 6 5 5 6 29 7 12 15 14 16 12 20 35 51 24 11 5 5 6 11 33 19 22 6 11 8 10 27 44 21 15 18 26 19 8 19 6 5 10 12 19 16 8 11 15 32 15 11 11 10 21 8 35 9 5 17 13 25 9 5 5 31 37 18 12 7 18 8 10 8 10 16 13 6 3 8 7 8 5 5 3 3 12 8 8 8 24 6 19 7 8 9 7 28 29 15 4 8 4 19 9 10 20 5 4 8 10

Alignment Information

BAC End 1

BAC End 2

seq1: chr3_3310804_3311198
seq2: B6Ng01-074D15.b_46_440 (reverse)

seq1  AAACAAACAAACAAACAAACAAACACCCTTCATCTTTCCCTCACAGACAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAACAAACAAACAAACAAACACCCTTCATCTTTCCCTCACAGACAT  50

seq1  CCACTACTACAAAGAAATATCTGTTAGCAATATTGACTTGGGGGAAGATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTACTACAAAGAAATATCTGTTAGCAATATTGACTTGGGGGAAGATA  100

seq1  TTTCAGAAACTCAGGATTTTGATAGGATATTGATGTCTCAAGAAGTCAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGAAACTCAGGATTTTGATAGGATATTGATGTCTCAAGAAGTCAGT  150

seq1  GATTTCTCAGCTCACTGAGCAGACTAAAGGTGAATTCATCCTGCCCTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCTCAGCTCACTGAGCAGACTAAAGGTGAATTCATCCTGCCCTGTG  200

seq1  CCACTTTCACCACAAGATGGTGATAATGTGTTTTGTTGAGTAAGAAACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTTCACCACAAGATGGTGATAATGTGTTTTGTTGAGTAAGAAACAA  250

seq1  GTTTGTCTTCTTAGAAGCACACTAATTTTGCTTTAAATAGGAAGCACAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTCTTCTTAGAAGCACACTAATTTTGCTTTAAATAGGAAGCACAGA  300

seq1  AAATCCACTTTTAAAACTCAAAAGTTTTGTGTAAAAGCTGTGGCTGTCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCACTTTTAAAACTCAAAAGTTTTGTGTAAAAGCTGTGGCTGTCTA  350

seq1  AGATGCCAAATAAACGTCATATTTTGTCACATCCTTAAAGAATTC  395
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCCAAATAAACGTCATATTTTGTCACATCCTTAAAGAATTC  395

seq1: chr3_3191520_3192234
seq2: B6Ng01-074D15.g_489_1204

seq1  CAAAGCAAAGACAGACTGATCTGGATATATTCATTTGTGTAGAAATTGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCAAAGACAGACTGATCTGGATATATTCATTTGTGTAGAAATTGGA  50

seq1  CCCTCATACAATCAGTTTGGCTATGGTTGCTTCCTCGCAGGGGACTACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCATACAATCAGTTTGGCTATGGTTGCTTCCTCGCAGGGGACTACAG  100

seq1  TACAACCAATGCTTCCAGCACTAAGGTTATAAGGAATGTTTTAATTATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAACCAATGCTTCCAGCACTAAGGTTATAAGGAATGTTTTAATTATAA  150

seq1  ATCTTCTTAAGAAAGACTGTCCAAAAATTAGAGGCATAGACAGACAGTCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCTTAAGAAAGACTGTCCAAAAATTAGAGGCATAGACAGACAGTCG  200

seq1  AATTGTTCCTCTGGAATCTGTCCTCACAGCAGAAGAGATAGTCTTTGGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTTCCTCTGGAATCTGTCCTCACAGCAGAAGAGATAGTCTTTGGGC  250

seq1  CAGGACTCTGGCAGTATGCTCAGATTGAAACATATTTACATTTGAGTTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACTCTGGCAGTATGCTCAGATTGAAACATATTTACATTTGAGTTAA  300

seq1  TGCAAATCTCAGAGCAGCCTCAGCAAGGC-TTGTGTGGAGTTTCTTTTG-  348
      ||||||||||||||||||||||||||||| ||||||||||||||||||| 
seq2  TGCAAATCTCAGAGCAGCCTCAGCAAGGCTTTGTGTGGAGTTTCTTTTGT  350

seq1  TTCAGCAATCCCTGCCTAGGGAAG-TTTTGGGACTTCACCTCCTTGCCTC  397
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TTCAGCAATCCCTGCCTAGGGAAGTTTTTGGGACTTCACCTCCTTGCCTC  400

seq1  CCTGGAACTATTTTTATTTCAAAACAACA-TTATTACAGATCTATCTAGG  446
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CCTGGAACTATTTTTATTTCAAAACAACATTTATTACAGATCTATCTAGG  450

seq1  TGTTGCTCAAAATAAAGTTTAAACTTAAGATATATGAAATGTCAATGACT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCTCAAAATAAAGTTTAAACTTAAGATATATGAAATGTCAATGACT  500

seq1  AATCTCTGAGGGATCCGGGAACCAAGATGTTGAAACTCAAGAAGAACAAA  546
      ||||||||||||||||||||||| |||||||||||||||||||| |||||
seq2  AATCTCTGAGGGATCCGGGAACC-AGATGTTGAAACTCAAGAAG-ACAAA  548

seq1  CACCAAAGTGTGGACATGTTGCCCCTTTCTTAGAATTGGGAACATAACAC  596
      ||||||||||||||||||||||||||||||||| |||||| |||||||  
seq2  CACCAAAGTGTGGACATGTTGCCCCTTTCTTAG-ATTGGG-ACATAACCA  596

seq1  CCATGGAAGAAGTTACAGAGACCAAGTTTGGAGCTGAGACAAAAGGATGG  646
      ||||||||| |||||| |||||||||||||| ||||||||||||||||||
seq2  CCATGGAAG-AGTTACGGAGACCAAGTTTGGGGCTGAGACAAAAGGATGG  645

seq1  ACCATGTAGAGACTG-CCATACCTGGGGATCCATCTCATAA-TCTGCCTC  694
        ||||||||||||| |||||| ||||||| |||||||||| ||||||||
seq2  GTCATGTAGAGACTGCCCATACTTGGGGAT-CATCTCATAATTCTGCCTC  694

seq1  -CAAACACTGACACCATTGCAT  715
       ||||||||||   ||||||||
seq2  TCAAACACTGAACACATTGCAT  716

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BAC

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Alignment Information