BAC Information

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BAC

Clone NameB6Ng01-074K20
Chromosome3 (Build37)
Map Location 95,938,080 - 96,091,664
singlet/doubletdoublet
Overlap geneOtud7b, Mtmr11, Sf3b4, Sv2a, Bola1, Hist2h2ab, Hist2h2ac, Hist2h2be, Hist2h3c2, Hist2h2aa1, Hist2h3c1, LOC100043378, Hist2h4, Hist2h3b, Hist2h2bb, Fcgr1
Upstream geneLysmd1, Tnfaip8l2, LOC668436, Sema6c, Gabpb2, Mllt11, Cdc42se1, Gm128, Bnipl, Prune, 4930504E06Rik, Anxa9, Lass2, Setdb1, LOC100043294, 4930558C23Rik, LOC277589, LOC668448, LOC100043305, Arnt, Ctsk, Ctss, LOC100043312, Hormad1, Golph3l, EG668457, Ensa, Mcl1, Adamtsl4, Ecm1, Tars2, 4930535B03Rik, LOC100043327, Prpf3, Mrps21, LOC100042889, Gm129, BC028528, Aph1a, Car14, Anp32e, LOC100042897, LOC100042898, EG668224, Plekho1, EG668222, Vps45, LOC100042908
Downstream genePafah1b1-ps1, Terc, BC107364, LOC668500, Hfe2, Txnip, Polr3gl, Ankrd34, 6330549D23Rik, Rbm8a, Pex11b, Itga10, Ankrd35, Pias3, Polr3c, Zfp364, Cd160, Pdzk1, Gpr89, Gja8, 9230114J08Rik, Gja5, Acp6, Bcl9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-074K20.bB6Ng01-074K20.g
ACCDH891453DH891454
length1,1081,067
definitionDH891453|Mus musculus domesticus DNA, BAC clone: B6Ng01-074K20, 5' end.DH891454|Mus musculus domesticus DNA, BAC clone: B6Ng01-074K20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,938,080 - 95,939,197)(96,090,605 - 96,091,664)
sequence
gaattctcatttgcattagatgaaaagcctttcattcacctgtgaattct
gaaagcatttaattttttttttttttggacagggtctttctttgtagctt
tgaattctcaatcctctcgcctctgcctcttgagtgctgatgttagaaat
gtgtaatacttgcctgccttgaaattcaatactttttattgttgttgttg
ttgaaacactttattcagaggcttgggggaaagttgtagaagtccatgtt
gtctgctgtcctgcccagggcagaccttagagatctccctgtcactaaga
gcttgaaactcaattcttaggcacaagttgcaagggggctgggtcacttc
atagaaagcttggccagaagctcttcatgtagttctggattagtgtgaga
ttaacagcaggggctgtttaccttaggctggattgctggcttggtgctta
ggatagtgaaacagatgcaaattagacatttgtttataatgaatttagtc
actaggtatttataactgcctattatattgtagataccttgctcagtgtt
ggactagggatatgaataaatcatgctctgtacccattggtttcttgtat
tattagagcactataagaaatagtgatttctcttttaaaaaaaaaaatcc
aaagaactaccaccaacaaaacaattcagttatcaggttagagacttata
atttttacaacccacaaaaatttgctatttgccttactagttctaaaaat
gtagaaaaatggaatcagatcatactacaaaaaagttgtattaagggata
gaagaggagtgaagaaaaaaatccttggaggtcatgcttaggctttaggt
tttcggaggaatgtattgtctgagtcatctgttgttttcaacaattctgg
ttttgtctttccaaaaagatgattagtgggtgcaatgagacagttggata
cctggcactttatgacgagccccttctacagagcaccgtagactatgagt
gtggtcagaggtggatctccaccctatttttgcttctcagctggactatt
aacctcagaggatgtgacattgtgccaggctgtcaggtcaggacttggtt
tctgctaa
gaattctttctatcatgcaaagtaaactttgtaccaaccaacttctgagc
cctgagaagggacgatgtaagaggggcctaatgtgaacagctattgagaa
gggacgatagagggcgctagtgtgcacagctgctgagaaggggcaataga
gggcgctagtgtgcacagctgctgagaaggggcaatagagggcgctagtg
tgcacagctgctgagaagggacaatagagggcgctagtgtgcacagctgc
tgagaaggggcaatagagggcgctagtgtgcacagctgctgagaagggac
aatagagggcgctagtgtgcacagctgctggcaaaagtcgattttctttc
acggaagaggagagctttgagagcgagacaggtgtgggccatagtggaga
ttggggttgggatgtttcaagtaaaagatataaaaatctccagggccaag
atttggcggcctcatacttcctcatactgttgcaaacactgtgggccctc
acttttcagattggctgctactccaggcctcccgcagagtcctcacagaa
ggagaacccctggccttgaggtgtcacggatggaagaataaactggtgta
caatgtggttttctatagaaatggaaaatcctttcagttttcttcagatt
cggaggtcgccattctgaaaaccaacctgagtcacagcggcatctaccac
tgctcaggcacgggaagacaccgctacacatctgcaggagtgtccatcac
ggtgaaaggtatccagtctagatagcaagagttacagttgtaaaggaccg
gaagagccactacaaaagcatccacggtcctcacttaaacttacaaagga
ggaagctgagtcctacgacgaggcaagcagcctccccaaagaccactcaa
tgaccattggctgggtttagtgtcgcaacccatttgctcttgcagatcta
caatggcccaccagtgtcacatcaaggggatagtgactgttctcttccat
caactttattttagcccttaaagccagggacttcaaattagttcaagaag
tttgtgtttttggttgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_95938080_95939197
seq2: B6Ng01-074K20.b_47_1154

seq1  GAATTCTCATTTGCATTAGATGAAAAGCCTTTCATTCACCTGTGAATTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATTTGCATTAGATGAAAAGCCTTTCATTCACCTGTGAATTCT  50

seq1  GAAAGCATTTAATTTTTTTTTTTTTTGGACAGGGTCTTTCTTTGTAGCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCATTTAATTTTTTTTTTTTTTGGACAGGGTCTTTCTTTGTAGCTT  100

seq1  TGAATTCTCAATCCTCTCGCCTCTGCCTCTTGAGTGCTGATGTTAGAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTCTCAATCCTCTCGCCTCTGCCTCTTGAGTGCTGATGTTAGAAAT  150

seq1  GTGTAATACTTGCCTGCCTTGAAATTCAATACTTTTTATTGTTGTTGTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAATACTTGCCTGCCTTGAAATTCAATACTTTTTATTGTTGTTGTTG  200

seq1  TTGAAACACTTTATTCAGAGGCTTGGGGGAAAGTTGTAGAAGTCCATGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAACACTTTATTCAGAGGCTTGGGGGAAAGTTGTAGAAGTCCATGTT  250

seq1  GTCTGCTGTCCTGCCCAGGGCAGACCTTAGAGATCTCCCTGTCACTAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGCTGTCCTGCCCAGGGCAGACCTTAGAGATCTCCCTGTCACTAAGA  300

seq1  GCTTGAAACTCAATTCTTAGGCACAAGTTGCAAGGGGGCTGGGTCACTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGAAACTCAATTCTTAGGCACAAGTTGCAAGGGGGCTGGGTCACTTC  350

seq1  ATAGAAAGCTTGGCCAGAAGCTCTTCATGTAGTTCTGGATTAGTGTGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAAGCTTGGCCAGAAGCTCTTCATGTAGTTCTGGATTAGTGTGAGA  400

seq1  TTAACAGCAGGGGCTGTTTACCTTAGGCTGGATTGCTGGCTTGGTGCTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAGCAGGGGCTGTTTACCTTAGGCTGGATTGCTGGCTTGGTGCTTA  450

seq1  GGATAGTGAAACAGATGCAAATTAGACATTTGTTTATAATGAATTTAGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAGTGAAACAGATGCAAATTAGACATTTGTTTATAATGAATTTAGTC  500

seq1  ACTAGGTATTTATAACTGCCTATTATATTGTAGATACCTTGCTCAGTGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGGTATTTATAACTGCCTATTATATTGTAGATACCTTGCTCAGTGTT  550

seq1  GGACTAGGGATATGAATAAATCATGCTCTGTACCCATTGGTTTCTTGTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTAGGGATATGAATAAATCATGCTCTGTACCCATTGGTTTCTTGTAT  600

seq1  TATTAGAGCACTATAAGAAATAGTGATTTCTCTTTTAAAAAAAAAAATCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGAGCACTATAAGAAATAGTGATTTCTCTTTTAAAAAAAAAAATCC  650

seq1  AAAGAACTACCACCAACAAAACAATTCAGTTATCAGGTTAGAGACTTATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAACTACCACCAACAAAACAATTCAGTTATCAGGTTAGAGACTTATA  700

seq1  ATTTTTACAACCCACAAAAATTTGCTATTTGCCTTACTAGTTCTAAAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTACAACCCACAAAAATTTGCTATTTGCCTTACTAGTTCTAAAAAT  750

seq1  GTAGAAAAATGGAATCAGATCATACTACAAAAAAGTTGTATTAAGGGATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAAAAATGGAATCAGATCATACTACAAAAAAGTTGTATTAAGGGATA  800

seq1  GAAGAGGAGTGAAGAAAAAAATCCTTGGAGGTCATGCTTAGGCTTTAGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGGAGTGAAGAAAAAAATCCTTGGAGGTCATGCTTAGGCTTTAGGT  850

seq1  TTTCGGAGGAATGTATTGTCTGAGTCATCTGTTGTTTTCAACAATTCTGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCGGAGGAATGTATTGTCTGAGTCATCTGTTGTTTTCAACAATTCTGG  900

seq1  TTTTGTCTTTTCCAAAAAGATGATTAGTGGGTGCAATGAGACAGTTGGAT  950
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTC-TTTCCAAAAAGATGATTAGTGGGTGCAATGAGACAGTTGGAT  949

seq1  ACCTGGGCACTTTATGAACGAGCCCCTTCTACAGAGCACCGTAAGACTAA  1000
      |||| ||||||||||| ||||||||||||||||||||||||| ||||| |
seq2  ACCT-GGCACTTTATG-ACGAGCCCCTTCTACAGAGCACCGT-AGACT-A  995

seq1  TGAGTGTGGTCAGAGGTGGATCTCCACCCTATTTTTGCTTTCTCAGCTGG  1050
      |||||||||||||||||||||||||||||||||||||| ||||||||| |
seq2  TGAGTGTGGTCAGAGGTGGATCTCCACCCTATTTTTGC-TTCTCAGCT-G  1043

seq1  GACTATTAACCTCAGAGGAATGTTGACATGGTGCCAGGCTGTCAGGTCAG  1100
      |||||||||||||||||| ||| |||||| ||||||||||||||||||| 
seq2  GACTATTAACCTCAGAGG-ATG-TGACATTGTGCCAGGCTGTCAGGTCA-  1090

seq1  GGACATAGTTTCTGCTAA  1118
      |||| | |||||||||||
seq2  GGACTTGGTTTCTGCTAA  1108

seq1: chr3_96090605_96091664
seq2: B6Ng01-074K20.g_71_1137 (reverse)

seq1  ACAACAAAAAACAACAAAC-TCTTG-ACTAATTTG-AGTCCCTGGCTTT-  46
      ||||| |||||| |||||| ||||| ||||||||| ||||||||||||| 
seq2  ACAACCAAAAAC-ACAAACTTCTTGAACTAATTTGAAGTCCCTGGCTTTA  49

seq1  AGGGCTAAAAT-AAGTTGAT-GAAG-GGACAGTCACTATCCCCTGACTGT  93
      ||||||||||| |||||||| |||| | ||||||||||||||||   |||
seq2  AGGGCTAAAATAAAGTTGATGGAAGAGAACAGTCACTATCCCCTTGATGT  99

seq1  GACACTGTTGGGCCATTGTAGATCTGCAAAGAGC-AATGGGTTGCGACAC  142
      ||||||| ||||||||||||||||||| |||||| |||||||||||||||
seq2  GACACTGGTGGGCCATTGTAGATCTGC-AAGAGCAAATGGGTTGCGACAC  148

seq1  TAAACCCAGCCAATGGTCATTGAGTGGTCTTTGGGGAGGCTGCTTGCCTC  192
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCCAGCCAATGGTCATTGAGTGGTCTTTGGGGAGGCTGCTTGCCTC  198

seq1  GTCGTAGGACTCAGCTTCCTCCTTTGTAAGTTTAAGTGAGGACCGTGGAT  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGTAGGACTCAGCTTCCTCCTTTGTAAGTTTAAGTGAGGACCGTGGAT  248

seq1  GCTTTTGTAGTGGCTCTTCCGGTCC-TTACAACTGTAACTCTTGCTATCT  291
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GCTTTTGTAGTGGCTCTTCCGGTCCTTTACAACTGTAACTCTTGCTATCT  298

seq1  AGACTGGATACCTTTCACCGTGATGGACACTCCTGCAGATGTGTAGCGGT  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGGATACCTTTCACCGTGATGGACACTCCTGCAGATGTGTAGCGGT  348

seq1  GTCTTCCCGTGCCTGAGCAGTGGTAGATGCCGCTGTGACTCAGGTTGGTT  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCCCGTGCCTGAGCAGTGGTAGATGCCGCTGTGACTCAGGTTGGTT  398

seq1  TTCAGAATGGCGACCTCCGAATCTGAAGAAAACTGAAAGGATTTTCCATT  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAATGGCGACCTCCGAATCTGAAGAAAACTGAAAGGATTTTCCATT  448

seq1  TCTATAGAAAACCACATTGTACACCAGTTTATTCTTCCATCCGTGACACC  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATAGAAAACCACATTGTACACCAGTTTATTCTTCCATCCGTGACACC  498

seq1  TCAAGGCCAGGGGTTCTCCTTCTGTGAGGACTCTGCGGGAGGCCTGGAGT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGCCAGGGGTTCTCCTTCTGTGAGGACTCTGCGGGAGGCCTGGAGT  548

seq1  AGCAGCCAATCTGAAAAGTGAGGGCCCACAGTGTTTGCAACAGTATGAGG  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCCAATCTGAAAAGTGAGGGCCCACAGTGTTTGCAACAGTATGAGG  598

seq1  AAGTATGAGGCCGCCAAATCTTGGCCCTGGAGATTTTTATATCTTTTACT  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATGAGGCCGCCAAATCTTGGCCCTGGAGATTTTTATATCTTTTACT  648

seq1  TGAAACATCCCAACCCCAATCTCCACTATGGCCCACACCTGTCTCGCTCT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACATCCCAACCCCAATCTCCACTATGGCCCACACCTGTCTCGCTCT  698

seq1  CAAAGCTCTCCTCTTCCGTGAAAGAAAATCGACTTTTGCCAGCAGCTGTG  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCTCTCCTCTTCCGTGAAAGAAAATCGACTTTTGCCAGCAGCTGTG  748

seq1  CACACTAGCGCCCTCTATTGTCCCTTCTCAGCAGCTGTGCACACTAGCGC  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTAGCGCCCTCTATTGTCCCTTCTCAGCAGCTGTGCACACTAGCGC  798

seq1  CCTCTATTGCCCCTTCTCAGCAGCTGTGCACACTAGCGCCCTCTATTGTC  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTATTGCCCCTTCTCAGCAGCTGTGCACACTAGCGCCCTCTATTGTC  848

seq1  CCTTCTCAGCAGCTGTGCACACTAGCGCCCTCTATTGCCCCTTCTCAGCA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTCAGCAGCTGTGCACACTAGCGCCCTCTATTGCCCCTTCTCAGCA  898

seq1  GCTGTGCACACTAGCGCCCTCTATTGCCCCTTCTCAGCAGCTGTGCACAC  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGCACACTAGCGCCCTCTATTGCCCCTTCTCAGCAGCTGTGCACAC  948

seq1  TAGCGCCCTCTATCGTCCCTTCTCAATAGCTGTTCACATTAGGCCCCTCT  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCGCCCTCTATCGTCCCTTCTCAATAGCTGTTCACATTAGGCCCCTCT  998

seq1  TACATCGTCCCTTCTCAGGGCTCAGAAGTTGGTTGGTACAAAGTTTACTT  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATCGTCCCTTCTCAGGGCTCAGAAGTTGGTTGGTACAAAGTTTACTT  1048

seq1  TGCATGATAGAAAGAATTC  1060
      |||||||||||||||||||
seq2  TGCATGATAGAAAGAATTC  1067